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Library:4683 (dbEST ID)
Organism: | Homo sapiens |
Developmental stage: | Adult |
Organ: | lung_normal |
Vector: | puc18 |
Vector type: | Plasmid |
Cloning site 1: | SmaI |
Cloning site 2: | SmaI |
A mini-library was made by cloning products derived from ORESTES PCR (U.S. Letters Patent application No. 196,716 - Ludwig Institute for Cancer Research) profiles into the pUC 18 vector. Reverse transcription of tissue mRNA and cDNA amplification were performed under low stringency conditions.
Source: Simpson A.J.G., Ludwig Institute for Cancer Research
435 ESTs from this library were grouped into 99 UniGene entries (putative genes) [UniGene build #218, 05-Jan-2009]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).
ESTs | TPM | UniGene Entry | ||
---|---|---|---|---|
226 | 519540 | Hs.632717 | Myosin, light chain 6, alkali, smooth muscle and non-muscle. | |
44 | 101149 | Hs.555895 | Thymosin-like 3. | |
26 | 59770 | Hs.77961 | Major histocompatibility complex, class I, B. | |
12 | 27586 | Hs.374596 | Tumor protein, translationally-controlled 1. | |
4 | 9195 | Hs.523732 | Secretoglobin, family 1A, member 1 (uteroglobin). | |
4 | 9195 | Hs.515487 | Calmodulin 3 (phosphorylase kinase, delta). | |
4 | 9195 | Hs.209151 | LYR motif containing 5. | |
3 | 6897 | Hs.80658 | Uncoupling protein 2 (mitochondrial, proton carrier). | |
3 | 6897 | Hs.533953 | KIAA1462. | |
3 | 6897 | Hs.433269 | E2F-associated phosphoprotein. | |
3 | 6897 | Hs.406013 | Keratin 18. | |
2 | 4598 | Hs.97199 | CD93 molecule. | |
2 | 4598 | Hs.708202 | Transcribed locus. | |
2 | 4598 | Hs.705836 | Hypothetical protein LOC100131706. | |
2 | 4598 | Hs.700112 | Immunoglobulin heavy locus. | |
2 | 4598 | Hs.648394 | Eukaryotic translation initiation factor 4B. | |
2 | 4598 | Hs.631991 | Major histocompatibility complex, class II, DO alpha. | |
2 | 4598 | Hs.524910 | Ferritin, heavy polypeptide 1. | |
2 | 4598 | Hs.522584 | Thymosin beta 4, X-linked. | |
2 | 4598 | Hs.511605 | Annexin A2. | |
2 | 4598 | Hs.504877 | Rho GDP dissociation inhibitor (GDI) beta. | |
2 | 4598 | Hs.500483 | Actin, alpha 2, smooth muscle, aorta. | |
2 | 4598 | Hs.471851 | High density lipoprotein binding protein. | |
2 | 4598 | Hs.356873 | RNA binding motif protein 8A. | |
2 | 4598 | Hs.352642 | Fc fragment of IgG, low affinity IIa, receptor (CD32). | |
2 | 4598 | Hs.150837 | Thioredoxin domain containing 5. | |
1 | 2299 | Hs.86538 | CDNA FLJ44429 fis, clone UTERU2015653. | |
1 | 2299 | Hs.73793 | Vascular endothelial growth factor A. | |
1 | 2299 | Hs.718601 | CDNA FLJ90705 fis, clone PLACE1007591. | |
1 | 2299 | Hs.714385 | Leukocyte receptor cluster (LRC) member 8. | |
1 | 2299 | Hs.714086 | Transcribed locus, strongly similar to NP_084027.1 ribosomal protein L18A [Mus musculus]. | |
1 | 2299 | Hs.713720 | Transcribed locus. | |
1 | 2299 | Hs.709320 | DnaJ (Hsp40) homolog, subfamily C, member 14. | |
1 | 2299 | Hs.708466 | Transcribed locus, strongly similar to XP_001095725.1 PREDICTED: similar to Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma) [Macaca mulatta]. | |
1 | 2299 | Hs.707244 | Transcribed locus, moderately similar to NP_000840.2 glutathione S-transferase mu 3 [Homo sapiens]. | |
1 | 2299 | Hs.691305 | CDNA FLJ14144 fis, clone MAMMA1002909. | |
1 | 2299 | Hs.666595 | Transcribed locus. | |
1 | 2299 | Hs.656638 | Engulfment and cell motility 1. | |
1 | 2299 | Hs.654404 | Major histocompatibility complex, class I, C. | |
1 | 2299 | Hs.644966 | Transcribed locus, moderately similar to NP_291032.2 major histocompatibility complex, class II, DP alpha 1 precursor [Homo sapiens]. | |
1 | 2299 | Hs.643683 | Integral membrane protein 2B. | |
1 | 2299 | Hs.643472 | Heterogeneous nuclear ribonucleoprotein H3 (2H9). | |
1 | 2299 | Hs.635723 | Interleukin 7 receptor. | |
1 | 2299 | Hs.632368 | Exosome component 10. | |
1 | 2299 | Hs.619277 | Transcribed locus. | |
1 | 2299 | Hs.605502 | Transcribed locus, strongly similar to NP_990822.1 heat shock 70kDa protein 5 precursor [Gallus gallus]. | |
1 | 2299 | Hs.600218 | Transcribed locus. | |
1 | 2299 | Hs.594106 | Transcribed locus. | |
1 | 2299 | Hs.593382 | Trans-golgi network protein 2. | |
1 | 2299 | Hs.591588 | Hexokinase 2. | |
1 | 2299 | Hs.591456 | Polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like. | |
1 | 2299 | Hs.588873 | Chromosome 16 open reading frame 57. | |
1 | 2299 | Hs.586423 | Eukaryotic translation elongation factor 1 alpha 1. | |
1 | 2299 | Hs.577404 | M-phase phosphoprotein 9. | |
1 | 2299 | Hs.554831 | Polymerase (RNA) II (DNA directed) polypeptide D. | |
1 | 2299 | Hs.537329 | Nck-associated protein 5. | |
1 | 2299 | Hs.533855 | UPF3 regulator of nonsense transcripts homolog A (yeast). | |
1 | 2299 | Hs.532357 | Tripartite motif-containing 21. | |
1 | 2299 | Hs.525479 | Vasohibin 1. | |
1 | 2299 | Hs.524828 | Zinc finger protein 664. | |
1 | 2299 | Hs.523454 | Tripeptidyl peptidase I. | |
1 | 2299 | Hs.520348 | Ubiquitin C. | |
1 | 2299 | Hs.518773 | Ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast). | |
1 | 2299 | Hs.518236 | Sec61 alpha 1 subunit (S. cerevisiae). | |
1 | 2299 | Hs.517227 | Junctional adhesion molecule 2. | |
1 | 2299 | Hs.515371 | Calpain, small subunit 1. | |
1 | 2299 | Hs.515018 | Guanine nucleotide binding protein (G protein), alpha 13. | |
1 | 2299 | Hs.514554 | KIAA1618. | |
1 | 2299 | Hs.512690 | Surfactant protein B. | |
1 | 2299 | Hs.5120 | Dynein, light chain, LC8-type 1. | |
1 | 2299 | Hs.508848 | Heterogeneous nuclear ribonucleoprotein C (C1/C2). | |
1 | 2299 | Hs.498732 | Phytanoyl-CoA 2-hydroxylase. | |
1 | 2299 | Hs.496982 | GRB2-associated binding protein 3. | |
1 | 2299 | Hs.494173 | Annexin A1. | |
1 | 2299 | Hs.492516 | Prefoldin subunit 2. | |
1 | 2299 | Hs.489105 | Family with sequence similarity 133, member B. | |
1 | 2299 | Hs.485041 | Tripartite motif-containing 26. | |
1 | 2299 | Hs.476033 | Thioredoxin domain containing 12 (endoplasmic reticulum). | |
1 | 2299 | Hs.473583 | Y box binding protein 1. | |
1 | 2299 | Hs.460807 | Chromosome 20 open reading frame 117. | |
1 | 2299 | Hs.460179 | SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans). | |
1 | 2299 | Hs.459211 | A kinase (PRKA) anchor protein 13. | |
1 | 2299 | Hs.437275 | Histone cluster 1, H2bk. | |
1 | 2299 | Hs.436142 | Protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase). | |
1 | 2299 | Hs.414332 | 2'-5'-oligoadenylate synthetase 2, 69/71kDa. | |
1 | 2299 | Hs.386989 | Dehydrogenase/reductase (SDR family) member 7B. | |
1 | 2299 | Hs.38044 | Chromosome 11 open reading frame 51. | |
1 | 2299 | Hs.356604 | WNK lysine deficient protein kinase 1. | |
1 | 2299 | Hs.351296 | UBX domain protein 1. | |
1 | 2299 | Hs.31562 | Surfactant associated 1 (pseudogene). | |
1 | 2299 | Hs.268785 | Acyl-CoA synthetase long-chain family member 4. | |
1 | 2299 | Hs.234282 | Vacuolar protein sorting 11 homolog (S. cerevisiae). | |
1 | 2299 | Hs.226755 | Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide. | |
1 | 2299 | Hs.221847 | Solute carrier family 38, member 2. | |
1 | 2299 | Hs.198161 | Jumonji domain containing 7. | |
1 | 2299 | Hs.171825 | Basic helix-loop-helix family, member e40. | |
1 | 2299 | Hs.171695 | Dual specificity phosphatase 1. | |
1 | 2299 | Hs.129673 | Eukaryotic translation initiation factor 4A, isoform 1. | |
1 | 2299 | Hs.114309 | Apolipoprotein L, 1. |
Source: NCBI UniGene
660 EST sequences from this library have been submitted to the public sequence database as of 05-Jan-2009.
Source: NCBI GenBank
Click the button to save sequences to a file (FASTA format)
Source: NCBI Clone Registry
Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al., Proc Natl Acad Sci U S A 97, 3491-3496 (2000).