<!doctype html public "-//w3c//dtd html 4.0
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ProteinSequence @nalysis
Chlorobiumlimicola
MAENTPKPAAGTAPAKPKPAAPGAAKPAAPKAARPGAAKPAAKPAAPRAAAPSG-----VYKKPPVDRPDP
Sacch. Cere
sequence:
0 10
-
20 --30
40
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-
| --
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Rhdbactersphaer. MSGIPHDHYEPRTGIEKWLHSRLPIVALAYDTIM-IPTPRNLN--WMWIWGVVLAFCLVLQIV (a pro)
Paracoccus
MAGIPHDHYEPKTGFERWLHRRLPIVSLVYDTLM-IPTPKNLN--WWWIWGIVLAFCLVLQIA (a pro)
Rickettsiap
-MNKEIIHKKSNGIIEWIDYRLPIFSFLKHFSY-YQTPKNLN--YLWNLGSIAGIALVIQII (a pro)
HHHHHHHHHH HHHHHHHHHHHH HHHHHHHHHHHHHHHHHH
Bostaurus
---------------MTNIRKSHPLMKIVNNAFIDLPAPSNIS--SWWNFGSLLGICLILQIL (mito)
chicken
--------------MAPNIRKSHPLLKMINNSLIDLPAPSNIS--AWWNFGSLLAVCLMTQIL (mito)
cichlasoma_boliv ----------------ASLRKTHPLLKIANDALVDLPAPSNIS--IWWNFGSLLGLCLAAQIL
Saccharocere
----------------MAFRKSNVYLSLVNSYIIDSPQPSSIN--YWWNMGSLLGLCLVIQIV (mito)
Soltuber
----------MTIRNQRLSLLKQPISSTLNQHLIDYPTPSNLS--YWWGFGSLAGICLVIQIV (mito)
Polytomel
----------------MRLHQKNNMLQLYYQHIEAYPTPCNLK--YSWNMGSLSGLLLASQIV (mito)
Chromatiumvinosum -------MSAEKTENLSWIDKRFPLSETWRNHLSEYYAPKNLN--FWSFFGSLAILTLVIQIV (g pro)
Aquifexa
--------MGLIEKIVDWIDERAHVREIYRTQMVEYKVAKNLT--FPYVFGILALVTFAIQII (Aqui)
Chlorobiumlimicola
NPFKDSKRDAVAGWFQERFYVLNPIIDYLKHKEVPKHALS-FWYYFGGLGLFFFVIQIL
B.stearothp
------MLNKLYDWVDERLDITPLWRDIADHEVPEHVNPAHHFSAFVYCFGGLTFFVTVIQIL (firmic)
Synechpcc
-----MFSKEVTESKVFQWFNDRLEVQAISDDIASKYVPPHVN--IFYCLGGLTLTCFLIQFA (cyanob)
Spinacia
------------MSKVYDWFEERLEIQAIADDITSKYVPPHVN--IFYCLGGITLTCFLVQVA (cplst
Chlamyrb6
------------MSKVYDWFEERLEIQAIADDITSKYVPPHVN--IFYCIGGITFTCFLVQVA
* :. * : :: *.
50
60
70 80
- 90 100
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*- | *
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Rhdbactersphaer. TGIVLAMHYTPHVDLAFASVEHIMRNVNGGFMLRYLH-ANGASLFFIAVYLHIFRGLYYGS
Paracoccus TGIVLVMHYTPHVDLAFASVEHIMRDVNGGYMLRYLH-ANGASLFFLAVYIHIFRGLYYGS
Rickettsiap TGVILAMHYTPHVDHAFESVERIMRNVNYGWLLRYTH-AVGASMFFAAIYLHIARGLYYGS
Bostaurus
TGLFLAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMH-ANGASMFFICLYMHVGRGLYYGS
chicken
TGLLLAMHYTADTSLAFSSVAHTCRNVQYGWLIRNLH-ANGASFFFICIFLHIGRGLYYGS
cichlasoma_boliv TGLFLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMH-ANGASFFFICIYLHIGRGLYYGS
Saccharocere TGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRYLH-ANGASFFFMVMFMHMAKGLYYGS
Soltuber TGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMH-ANGASMFFIVVYLHIFRGLYYAS
Polytomella TGILLAMHYCPDTSLAFYSVIHLTVDVPYGFVIRYFH-MNGASLFFVAVFLHLFRNLYYNS
Chromatiumvinosum TGVWLAMSYKPDAGLAFASVEYIMRDVDWGWLIRYMH-STGASMFFIVIYLHMFRGLLRGS
Aquifexa
SGMVLILYYNLQSQTLL-TVHLLDNGRNSLRMALQAHTRTGANFFMAIVYLHMFTGIYYNA
Chlorobiumlimicol TGLLLLQYYKPTETDAFASFLFIQGEVPFGWLLRQIH-AWSANLMIMMLFIHMFSTFFMKS
B.stearothp SGMFLTMYYVPDIKNAWESVYYLQNEVAFGQIVRGMH-HWGASLVIVMMFLHTVRVFFQGA
Synechpcc
TGFAMTFYYKPTVTEAFASVQYIMNEVNFGWLIRSIH-RWSASMMVLMMILHVFRVYLTGG
Spinacia
TGFAMTFYYRPTVTDAFASVQYIMTEVNFGWLIRSVH-RWSASMMVLMMILHVFRVYLTGG
Chlamyrb6
TGFAMTFYYRPTVAEAFASVQYIMTDVNFGWLIRSIH-RWSASMMVLMMVLHVFRVYLTGG
**. :.: * . ** ** : :*. *:::* :*
.**::.: : :*: : ..
Chlorobiumlimicola
------------------------------------
110 120
130 140
150 ---------- 160
|
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Rhdbactersphaer. YKAPREVTWIVGMLIYLAMMATAFMGYVLPWGQMSFWGATVITGLFG----------AIPGIGHSIQTWL
Paracoccus YKAPREVTWIVGMLIYLMMMGTAFMGYVLPWGQMSFWGATVITGLFG----------AIPGVGEAIQTWL
Rickettsiap YKTPRELLWHIGIIIFLIMMATAFMGYVLPWGQMSYWGATVITNLFS----------AIPLVGEPIVIWL
Bostaurus
YT--FLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATVITNLLS----------AIPYIGTNLVEWI
chicken
YL--YKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFS----------AIPYIGHTLVEWA
cichlasoma_boliv YL--YKETWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLS----------AVPYIGNSLVQWL
Saccharocere YRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFS----------AIPFVGNDIVSWL
Soltuber
YSSPREFVRCLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVITSLAS----------AIPVVGDTIVTWL
Polytomella GSQPRELLYISGVVILLLMVITAFIGYVLPWGQMSFWGATVITSLVS----------AVPIVGTDLVYYL
Chromatiumvinosum YRKPRELLWMIGVVIYLVMMATAFFGYLLPWGQMSYWGAQVIVNLFA----------AVPVVGEDLSVWV
Aquifexa
YKRPRELVWIVGWLIYFVLILTALSGYLLPWGQLSYWGFIVTTEIPGSLADAPILKPIFKAIAETIVLWM
Chlorobiumlimicol YRKPRELMWVSGFVLLLLSLGFGFTGYLLPWNELAFFATQVGTEVPK----------VAPG-GAFLVEIL
B.stearothp YKKPREMNWIVGVLIFMVMMGLGFTGYLLPWDMKALFATKVGLQIVE----------AVPLIGPAIKTLL
Synechpcc
FKKPRELTWVVGVMLAVTTVTFGVTGYSLPWDQVGYWAVKIVSGVPA----------AIPVVGDQLVTLM
Spinacia
FKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPD----------AIPVIGSPLVELL
Chlamyrb6
FKRPRELTWVTGVIMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPD----------AIPGVGGFIVELL
: . *::: : ..
** :.*:..*.. :: .: *:* :* : DCCD-Binding
170 - 180 -
190 200
210
| - |
- |
|
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Rhdbactersphaer. LGGPAVDNA-TLNRFFSLH-YLLPFVIAALVAIHIWAFHSTGNNNPTGVEVRRTSK-----
Paracoccus LGGPAVDNP-TLNRFFSLH-YLLPFVIAALVVVHIWAFHTTGNNNPTGVEVRRGSK-----
Rickettsiap WGGFSVDNP-TLNRFFALH-YLFPFIIVVLVILHLVALHQHGSNNPKGIDVK---------
Bostaurus
WGGFSVDKA-TLTRFFAFH-FILPFIIMAIAMVHLLFLHETGSNNPTGIS-----------
chicken
WGGFSVDNP-TLTRFFALH-FLLPFAIAGITIIHLTFLHESGSNNPLGIS-----------
cichlasoma_boliv WGGFSVDNA-TLTRFFAFH-FLLPFIIAAMTMIHLIFLHETGSTNPAGLN-------------
Saccharocere WGGFSVSNP-TIQRFFALH-YLVPFIIAAMVIMHLMALHIHGSSNPLGIT-----------
Soltuber
WGGFSVDNA-TLNRFFSLH-YLLPFILVGASLLHLAALHQYGSNNPLGVH-----------
Polytomella WGGFSVSNP-TLNRFFSFH-YLLPFVLAGLSIAHLAALHSYGSTNPLSIN-----------
Chromatiumvinosum RGDFVISDA-TLNRFFAFH-FLLPFLLAGLVFLHIVALHHVGSNNPDGIEIKEGPKGNRWS
Aquifexa
KGGYVVTDV-TLGRVFGSHVLIYPLILLALVGIHLYLVRAAGISNPEGIEYDKKK------
Chlorobiumlimicol RGGPEVGGE-TLTRMFSLHVVLLPGLVMLVLAAHLTLVQILGTSAPIGYKEAG-----LIK
B.stearothp AGDPEIVGAQTLARFFAIHVFFLPAALLGLMAAHFLMIRRQGISGPLMHRGKGMKFVGDSR
Synechpcc
RGSESVGQA-TLTRFYSLHTFVLPWAIAVLLLLHFLMIRKQGISGPLMSIMKKPDLSDP-K
Spinacia
RGSASVGQS-TLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPLMGVTKKPDLNDP-V
Chlamyrb6
RGGVGVGQA-TLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
*. :...*: **:::* .::* :*:
:: * ..*
220 230
240
------250 260
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Rhdbactersphaer. AEAQKDT-VPFWPYFIIKDVFALAVVLLVFFAIVGFMP------NYLGHPDNYIEANPLSTPA
Paracoccus EEAKKDT-LPFWPYFVIKDLFALAVVLVVFFAIVGFMP------NYLGHPDNYIEANPLVTPA
Rickettsiap --STKDT-IPFHPYYTVKDFVGFGVYFIIFAYFIFYAP------NYLGHPDNYIPANPLVTPA
Bostaurus
--SDVDK-IPFHPYYTIKDILGALLLILALMLLVLFAP------DLLGDPDNYTPANPLNTPP
chicken
--SDSDK-IPFHPYYSFKDILGLTLMLTPFLTLALFSP------NLLGDPENFTPANPLVTPP
cichlasoma_boliv --SDAEK-ISFHPYFSYKDLLGFAVLLVALIALALFSP------NLLGDPDNFIPANPLVTPP
Saccharocere --GNLDR-IPMHSYFIFKDLVTVFLFMLILALFVFYSP------NTLGQPDNYIPGNPLVTPA
Soltuber
--SEMDK-IASYPYFYVKDLVGWVAFAIFFSIWIFYAP------NVLGHPDNYIPANPMSTPP
Polytomella ---SVAK-VPFGSYYIIKDLLGVLIIGAAMIVLAFFFP------EALNHSDNYIPANPYSTPA
Chromatiumvinosum DKAPADG-IPFHPYYTVKDLMGVVVFLAIFGYVMFFNP---TMGGLFLEAPNFQPANPMQTPA
Aquifexa
---NPDKFVPFHPYMTLKEGAYVMWYLAVFFFFVFFHI------SHFLPPENFEPANPLKTPA
Chlorobiumlimicola GYDKFFPTFLAKDGIGWLIGFALLIYLAVMFP------WEIGVKANPLSPAPL
B.stearothp IPAVRKPNIPKDYSEYPGKTEVFWPNFLLKEWLVGSVFLVG-FLCLTVAHPSPLERIADPTDTTY
B.stearothp? GDSRIPAVRKPNIPKDYSEYPGKTEVFWPNFLLKEWLVGSVFLVGFLCLTVAHPSPLERIADPTDTTY
Synechpcc
LRAKLAQ-NMGHNYYG--EPAWPNDILFTFPICIAGTIGLITGLAILDPAMIGEPGNPFATPL
Spinacia
LRAKLAK-GMGHNYYG--EPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPL
.
*:
.
. .:*: **
270
280
290 300
| |
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|
Rhdbactersphaer. HIVPEWYFLPFYAILRAFTADVWVVQIANFISFGIIDAKFFGVLAMFGAILVMAL-VPWLD
Paracoccus HIVPEWYFLPFYAILRAFTADVWVVMLVNWLSFGIIDAKFFGVIAMFGAILVMAL-VPWLD
Rickettsiap HIVPEWYFLPFYAILRAV------------------PSKLGGVFLMFGSIVVLFL-LPWLD
Bostaurus
HIKPEWYFLFAYAILRSI------------------PNKLGGVLALAFSILILAL-IPLLH
chicken
HIKPEWYFLFAYAILRSI------------------PNKLGGVLALAASVLILFL-IPFLH
cichlasoma_boliv HIKPEWYFLFAYAILRSI------------------PNKLGGVLALLFSILILML-VPILH
Saccharocere SIDPEWYLLPFYAILRSI------------------PDKLLGVITMFAAILVLLV-LPFTD
Soltuber
HIVPEWYFLPIYAILRSI------------------PDKVGGVAAIALVFICLLA-LPFFK
Polytomella HIVPEWYFLPVYAILRSI------------------PDKGIGILAVLLFFIGLGL-QPFLS
Chromatiumvinosum HIAPVWYFTPFYAMLRAV--------------PPMYGSQFPGVVVMFAAILILFV-LPWLD
Aquifexa
HIAPEWYLLGYYEVFRSI------------------PSKFWGFVAFNALLLLLLL-LPFLD
Chlorobiumlimicol GIKPEWYFWAQFQLLK--------------------DFKFEGGELLAIILFTIGG-VVWLL
B.st.
IPLPDWYFLFLYQLLKYSY--------------ASGPYTVIGAIVMPGLAFGALLLAPFLD
Synechpcc
EILPEWYLYPVFQILRVL------------------PNKLLGIACQGAIPLGLMM-VPFIE
Spinacia
EILPEWYFFPVFQILRTV------------------PNKLLGVLLMASVPAGLLT-VPFLE
* * **: .
:**
:. *: : :* .
310
320 330
340 350
360
|
-|
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Rhdbactersphaer. TSPVRSGRY-RPMFKIYFWLLAADFVILTWVGAQQTTFPYDWISLIASAYWFAYFLVILP
Paracoccus TSRVRSGQY-RPLFKWWFWLLAVDFVVLMWVGAMPAEGIYPYIALAGSAYWFAYFLIILP
Rickettsiap TSKIRSGNY-RPIYRIAFWIFMADCLFLGYLGSKPVSEPYITISRFAVCYYFCHFLLVLP
Bostaurus
TSKQRSMMF-RPLSQCLFWALVADLLTLTWIGGQPVEHPYITIGQLASVLYFLLILVLMP
chicken
KSKQRTMTF-RPLSQTLFWLLVANLLILTWIGSQPVEHPFIIIGQMASLSYFTILLILFP
cichlasoma_boliv TSKLRALTF-RPLTQCLFWLLVADVMILTWIGGMPVEHPFIIIGQIASILYFTIFLILLP
Saccharocere RSVVRGNTF-KVLSKFFFFIFVFNFVLLGQIGACHVEVPYVLMGQIATFIYFAYFLIIVP
Soltuber
SMYVRSSSF-RPIYQGMFWLLLADCLLLGWIGCQPVEAPFVTIGQISSLVFFLFFAI-TP
Polytomella QGKA------EPHFYASFI---GGLFVLGWLGSKEITDVTSAAPSFFTLFTFAYLFVVSP
Chromatiumvinosum RSPVKSMRYKGPIFKWATGIFVVSFVALAWLGIQPASDFYTLLSQIFTVLYFAYFLL-MP
Aquifexa
FSPLKSA-RRRPLFFVMFVIFMISSMALTILGTMPPTPQNAKLGLIFAALVFAFFIS-LP
Chlorobiumlimicol VPFIDRQASEEKKSPIFTIFGILVLAFLLINTYRVYAEYSMLK----------------
B.st.
RGPE-RRPWKRPVATGMMLLTLAAIVYLTWESVVTHDWEKAAEQGKIRAEVEIDTN
Synechpcc
SVNKFQNPFRRPVAMAVF--LFGTAVTL-WLGAGA-CFPIDESLTLGLF------------
Spinacia NVNKFQNPFRRPVATTVF--LVGTVVAL-WLGIGA-TLPIDKSLTLGLF------------
:: : :
* .
370 380
| |
Rhdbactersphaer. ILGAIEKPVAPPATIEEDFNAHYSPATGGTKTVVAE
Paracoccus LLGIIEKPDAMPQTIEEDFNAHYGPETHPAE-----
Rickettsiap LIGKYEKPLPLPKVL---------------------
Bostaurus
TAGTIENKLLKW------------------------
chicken
TIGTLENKMLNY------------------------
cichlasoma_boliv TAGLTENKI---------------------------
Saccharocere VISTIENVLFYIGRVNK-------------------
Soltuber
ILGRVGRGIPNSYTDETDHT----------------
Polytomella LYSLLYNRVKG-------------------------
Chromatiumvinosum IYSSLDKTKPFLRG----------------------
Aquifexa
IISFIEYGWYKAKGGQQE------------------
B.st. 181
aegykiaqantCTSCHgenlsggagpslvgtgltaeeiakiakegqgsmpggifkgtdee
Synechpcc
------------------------------------
Spinacia
------------------------------------
Bacillus st.:N-term is suIV, C-term is cyt c1
1 MHRGKGMKFV GDSRIPAVRK PNIPKDYSEY PGKTEVFWPN FLLKEWLVGS
VFLVGFLCLT
61 VAHPSPLERI ADPTDTTYIP LPDWYFLFLY QLLKYSYASG
PYTVIGAIVM PGLAFGALLL
121 APFLDRGPER RPWKRPVATG MMLLTLAAIV YLTWESVVTH
DWEKAAEQGK IRAEVeidtn
181 aegykiaqan tCTSCHgenl sggagpslvg
tgltaeeiak iakegqgsmp ggifkgtdee
241 lqkmansspa
Note suIV ends w helix G
, so C-term on periplasmic side where cyt c1 N-term
is.
BC1-LIKE VS B6F LIKE:
Split cyt b
15 residues between H ligands in helix D
H202 - R
C at start of helix A