R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7449968|pir||T08443 hypothetical protein F22O6.60 - Arabidopsis thaliana
>gi|4886271|emb|CAB43411.1| (AL050300) putative DNA-binding protein
[Arabidopsis thaliana]
Length = 146
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | 146
0 50 100
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 4.5e-37, P = 4.5e-37
Identities = 78/111 (70%), Positives = 89/111 (80%), Frame = +1
Query: 43 IVMGSEGSSVVVPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPG-- 216
+ +GS GSSVVVPRNFRLL+ELERGEKGIGDGTVSYGMDD DDIYM+SWTGTIIGP
Sbjct: 1 MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 60
Query: 217 -------LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLAN 348
LKLFC +DYP+ PP+VRF +R+NM CVN ETGVV+P F +LAN
Sbjct: 61 HEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLAN 111
>gi|6453892|gb|AAF09075.1|AC011663_11 (AC011663) unknown protein [Arabidopsis
thaliana]
Length = 159
Frame 1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | 159
0 50 100 150
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 4.5e-37, P = 4.5e-37
Identities = 79/109 (72%), Positives = 88/109 (80%), Frame = +1
Query: 49 MGSEGSSVVVPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPG---- 216
MGSE VVVPRNFRLL+ELERGEKGIGDGTVSYGMDDADDI MQSWTGTI+GP
Sbjct: 1 MGSEEEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYE 60
Query: 217 -----LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLAN 348
LKLFC +DYP++PP+VRFQ+RINM CVN E GVV+P FPML+N
Sbjct: 61 GKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSN 109
>gi|4510363|gb|AAD21451.1| (AC007017) putative ubiquitin-conjugating enzyme
[Arabidopsis thaliana]
Length = 145
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | 145
0 50 100
Plus Strand HSPs:
Score = 394 (138.7 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 78/110 (70%), Positives = 89/110 (80%), Frame = +1
Query: 43 IVMGSEGSSVVVPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPG-- 216
+ +GS GSSVVVPRNFRLL+ELERGEKGIGDGTVSYGMDD DDIYM+SWTGTIIGP
Sbjct: 1 MTLGS-GSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTV 59
Query: 217 -------LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLAN 348
LKLFC +DYP+ PP+VRF +RINMTCVN +TGVV+ F +LAN
Sbjct: 60 HEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLAN 110
>gi|2982253|gb|AAC32114.1| (AF051209) CROC-1-like protein [Picea mariana]
Length = 140
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | 140
0 50 100
Plus Strand HSPs:
Score = 384 (135.2 bits), Expect = 1.2e-34, P = 1.2e-34
Identities = 76/105 (72%), Positives = 85/105 (80%), Frame = +1
Query: 61 GSSVVVPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPG-------- 216
GSSVVVPRNFRLL+ELERGEKGIGDG+VSYGMDD+DDIYM+SWTGTIIGP
Sbjct: 1 GSSVVVPRNFRLLEELERGEKGIGDGSVSYGMDDSDDIYMRSWTGTIIGPHNSVHDGRIY 60
Query: 217 -LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLAN 348
LKLFC +DYP+ P+V F +R+NMTCVNQETG VEP F MLAN
Sbjct: 61 QLKLFCDKDYPEKAPTVGFCSRVNMTCVNQETGRVEPKHFSMLAN 105
>gi|4507795 ref|NP_003340.1| ubiquitin-conjugating enzyme E2 variant 1
>gi|1066082|gb|AAB72016.1| (U39361) DNA-binding protein [Homo
sapiens]
Length = 221
Frame 1 hits (HSPs): ____ _________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 274 (96.5 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 55/107 (51%), Positives = 70/107 (65%), Frame = +1
Query: 64 SSVVVPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP---------G 216
+ V VPRNFRLL+ELE G+KG+GDGTVS+G++D +D+ + WTG IIGPP
Sbjct: 81 TGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYS 140
Query: 217 LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANLGN 357
LK+ C YP+ PP VRF T+INM VN GVV+P +LA N
Sbjct: 141 LKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQN 187
Score = 35 (12.3 bits), Expect = 4.1e-25, Sum P(2) = 4.1e-25
Identities = 6/15 (40%), Positives = 10/15 (66%), Frame = +1
Query: 13 YPFLVFEFFIIVMGS 57
YP+ F F +I+ G+
Sbjct: 17 YPWECFVFCLIIFGT 31
>gi|7295469|gb|AAF50784.1| (AE003566) CG10640 gene product [Drosophila
melanogaster]
Length = 145
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | 145
0 50 100
Plus Strand HSPs:
Score = 278 (97.9 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 51/106 (48%), Positives = 73/106 (68%), Frame = +1
Query: 55 SEGSSVVVPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP------- 213
+ + VVVPRNFRLL+EL++G+KG+GDGT+S+G+++ DD+ + W G IIGPP
Sbjct: 4 TSSTGVVVPRNFRLLEELDQGQKGVGDGTISWGLENDDDMTLTYWIGMIIGPPRTPFENR 63
Query: 214 --GLKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLA 345
LK+ C YPD PP++RF T++N+ C+NQ GVV+ MLA
Sbjct: 64 MYSLKIECGERYPDEPPTLRFITKVNINCINQNNGVVDHRSVQMLA 109
>gi|7449967|pir||JC5525 1 alpha,25-dihydroxyvitamin D3-inducible protein -
human >gi|2213449|emb|CAA66717.1| (X98091) vitamin D inducible
protein [Homo sapiens] >gi|2947301|gb|AAC05381.1| (AF049140) MMS2
[Homo sapiens] >gi|4775664|gb|AAB04758.2| (U62136) enterocyte
differentiation associated factor EDAF-1 [Homo sapiens]
Length = 145
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | 145
0 50 100
Plus Strand HSPs:
Score = 275 (96.8 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 54/107 (50%), Positives = 72/107 (67%), Frame = +1
Query: 64 SSVVVPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP---------G 216
+ V VPRNFRLL+ELE G+KG+GDGTVS+G++D +D+ + WTG IIGPP
Sbjct: 5 TGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYS 64
Query: 217 LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANLGN 357
LK+ C YP+ PPSVRF T+INM +N +G+V+ P+LA N
Sbjct: 65 LKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQN 111
>gi|7449966|pir||G02766 enterocyte differentiation promoting factor - human
(fragment)
Length = 144
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | 144
0 50 100
Plus Strand HSPs:
Score = 275 (96.8 bits), Expect = 4.4e-23, P = 4.4e-23
Identities = 54/107 (50%), Positives = 72/107 (67%), Frame = +1
Query: 64 SSVVVPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP---------G 216
+ V VPRNFRLL+ELE G+KG+GDGTVS+G++D +D+ + WTG IIGPP
Sbjct: 4 TGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYS 63
Query: 217 LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANLGN 357
LK+ C YP+ PPSVRF T+INM +N +G+V+ P+LA N
Sbjct: 64 LKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQN 110
>gi|1448967|gb|AAB04629.1| (L77699) CROC-1B gene product [Gallus gallus]
Length = 146
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | 146
0 50 100
Plus Strand HSPs:
Score = 274 (96.5 bits), Expect = 5.6e-23, P = 5.6e-23
Identities = 55/107 (51%), Positives = 70/107 (65%), Frame = +1
Query: 64 SSVVVPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP---------G 216
+ V VPRNFRLL+ELE G+KG+GDGTVS+G++D +D+ + WTG IIGPP
Sbjct: 6 TGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYS 65
Query: 217 LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANLGN 357
LK+ C YP+ PP VRF T+INM VN GVV+P +LA N
Sbjct: 66 LKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQN 112
>gi|2689608|gb|AAC02755.1| (U97280) UEV1Bs [Homo sapiens]
Length = 151
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | || 151
0 50 100 150
Plus Strand HSPs:
Score = 273 (96.1 bits), Expect = 7.1e-23, P = 7.1e-23
Identities = 55/105 (52%), Positives = 69/105 (65%), Frame = +1
Query: 70 VVVPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP---------GLK 222
V VPRNFRLL+ELE G+KG+GDGTVS+G++D +D+ + WTG IIGPP LK
Sbjct: 13 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 72
Query: 223 LFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANLGN 357
+ C YP+ PP VRF T+INM VN GVV+P +LA N
Sbjct: 73 IECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQN 117
>gi|7208824|emb|CAB76865.1| (AL034423) dJ1185N5.2 (ubiquitin-conjugating enzyme
E2 variant 1) [Homo sapiens]
Length = 170
Frame 1 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | 170
0 50 100 150
Plus Strand HSPs:
Score = 273 (96.1 bits), Expect = 7.1e-23, P = 7.1e-23
Identities = 55/105 (52%), Positives = 69/105 (65%), Frame = +1
Query: 70 VVVPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP---------GLK 222
V VPRNFRLL+ELE G+KG+GDGTVS+G++D +D+ + WTG IIGPP LK
Sbjct: 32 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 91
Query: 223 LFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANLGN 357
+ C YP+ PP VRF T+INM VN GVV+P +LA N
Sbjct: 92 IECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQN 136
>gi|1066080|gb|AAB72015.1| (U39360) DNA-binding protein [Homo sapiens]
Length = 170
Frame 1 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | 170
0 50 100 150
Plus Strand HSPs:
Score = 255 (89.8 bits), Expect = 5.8e-21, P = 5.8e-21
Identities = 51/102 (50%), Positives = 65/102 (63%), Frame = +1
Query: 79 PRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP---------GLKLFC 231
P FRLL+ELE G+KG+GDGTVS+G++D +D+ + WTG IIGPP LK+ C
Sbjct: 35 PSQFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIEC 94
Query: 232 SRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANLGN 357
YP+ PP VRF T+INM VN GVV+P +LA N
Sbjct: 95 GPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQN 136
>gi|6321351 ref|NP_011428.1| Similar to ubiquitin conjugating protein family;
Mms2p >gi|1723880|sp|P53152|YGI7_YEAST HYPOTHETICAL 15.5 KD PROTEIN
IN MFAL2-MAD1 INTERGENIC REGION >gi|2131581|pir||S64094
hypothetical protein YGL087c - yeast (Saccharomyces cerevisiae)
>gi|1322613|emb|CAA96792.1| (Z72609) ORF YGL087c [Saccharomyces
cerevisiae] >gi|2967521|gb|AAC24241.1| (U66724) Mms2p
[Saccharomyces cerevisiae]
Length = 137
Frame 1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | 137
0 50 100
Plus Strand HSPs:
Score = 247 (86.9 bits), Expect = 4.0e-20, P = 4.0e-20
Identities = 48/91 (52%), Positives = 61/91 (67%), Frame = +1
Query: 76 VPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP---------GLKLF 228
VPRNFRLL+ELE+GEKG G + SYG+ D+DDI M W GTI+GPP L +
Sbjct: 4 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSID 63
Query: 229 CSRDYPDNPPSVRFQTRINMTCVNQETGVVE 321
C +YPD+PP V F ++IN+ CVN TG V+
Sbjct: 64 CGPNYPDSPPKVTFISKINLPCVNPTTGEVQ 94
>gi|7500835|pir||T21984 hypothetical protein F39B2.2 - Caenorhabditis elegans
>gi|3876909|emb|CAB07383.1| (Z92834) cDNA EST yk279e5.3 comes from
this gene~cDNA EST yk593d12.3 comes from this gene [Caenorhabditis
elegans]
Length = 139
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | 139
0 50 100
Plus Strand HSPs:
Score = 243 (85.5 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 48/105 (45%), Positives = 66/105 (62%), Frame = +1
Query: 70 VVVPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP---------GLK 222
V VPRNFRLL+ELE G+KG GDG +S+G++D D+ + WT +IIGPP L+
Sbjct: 2 VDVPRNFRLLEELEEGQKGKGDGNISWGLEDDSDMTLTRWTASIIGPPRTPYESRIYNLQ 61
Query: 223 LFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANLGN 357
+ C +YP PP+VRF T+++M VNQ GV++ L N N
Sbjct: 62 IQCGGNYPREPPTVRFTTKVHMVGVNQSNGVIDKRNLTTLRNWSN 106
>gi|7493575|pir||T41737 ubiquitin-conjugating-enzyme-like protein - fission
yeast (Schizosaccharomyces pombe) >gi|3184080|emb|CAA19336.1|
(AL023781) ubiquitin-conjugating-enzyme-like protein
[Schizosaccharomyces pombe]
Length = 139
Frame 1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 139
0 50 100
Plus Strand HSPs:
Score = 242 (85.2 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 47/93 (50%), Positives = 62/93 (66%), Frame = +1
Query: 76 VPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP---------GLKLF 228
VPRNF+LL+ELE+GEKG+G+ + SYG+ +ADDI + W TI+GP LK+
Sbjct: 4 VPRNFKLLEELEKGEKGLGESSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIH 63
Query: 229 CSRDYPDNPPSVRFQTRINMTCVNQETGVVEPH 327
C +YPD PP V F +RIN+ V+ ETG V PH
Sbjct: 64 CDANYPDAPPIVTFVSRINLPGVDGETGKVNPH 96
>gi|4493898|emb|CAB39007.1| (AL034558) predicted using hexExon; MAL3P2.20
(PFC0255c), Ubiquitin-conjugating enzyme E2, len: 143 aa;
Similarity to ubiquitin-conjugating enzyme E2. S.cerevisiae
hypothetical protein YGL087C (YGI7_YEAST) BLAST Score: 378, sum
P(1) = 3.8e-35; 52% iden>
Length = 142
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 142
0 50 100
Plus Strand HSPs:
Score = 232 (81.7 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 47/98 (47%), Positives = 69/98 (70%), Frame = +1
Query: 64 SSVVVPRNFRLLQELERGEKG-IGDGTVSYGMDDADDIYMQSWTGTIIGPPG-------- 216
S V+VPR+FRLL ELERG+KG + +G VS+G++ ADDI + +W+ TI G PG
Sbjct: 2 SEVIVPRSFRLLDELERGQKGNVSEG-VSFGLESADDITLSNWSCTIFGQPGTVFENRIY 60
Query: 217 -LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHL 330
L +FC +YPD+PP+V+F T+I M+CV+ V++ +L
Sbjct: 61 SLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNL 99
>gi|6708306|gb|AAF25882.1|AF210381_1 (AF210381) DDVit1 [Bos taurus]
Length = 131
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | 131
0 50 100
Plus Strand HSPs:
Score = 232 (81.7 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 45/97 (46%), Positives = 64/97 (65%), Frame = +1
Query: 94 LLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP---------GLKLFCSRDYP 246
LL+ELE G+KG+GDG VS+G++D +D+ + WTG IIGPP L++ C YP
Sbjct: 1 LLEELEEGQKGVGDGAVSWGLEDDEDMTLTWWTGMIIGPPRTNYENRIYSLRVECGPKYP 60
Query: 247 DNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANLGN 357
++PPSVRF T+INM +N +G+V+ P+LA N
Sbjct: 61 ESPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQN 97
>gi|7687917|emb|CAB89632.1| (AL354553) probably ubiquitin-conjugating enzyme
[Leishmania major]
Length = 138
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | 138
0 50 100
Plus Strand HSPs:
Score = 214 (75.3 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 44/97 (45%), Positives = 59/97 (60%), Frame = +1
Query: 70 VVVPRNFRLLQELERGEKGIGDG-TVSYGMDDADDIYMQSWTGTIIGPPG---------L 219
V VPRNFRLL+ELE GEKG G VS G+ D DI+ W GTI+GPP L
Sbjct: 2 VEVPRNFRLLEELETGEKGTGSNQNVSVGLRDTADIFFHYWNGTIVGPPSTAFEYRILSL 61
Query: 220 KLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLF 333
+++C +YP PP +RF +++N+ CV+ + G V F
Sbjct: 62 EIYCDENYPKVPPHIRFLSKVNLPCVDPD-GTVNRERF 98
>gi|4959879|gb|AAD34540.1|AF139024_1 (AF139024) E2 conjugating enzyme homolog
X1 [Sterkiella histriomuscorum]
Length = 116
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | 116
0 50 100
Plus Strand HSPs:
Score = 162 (57.0 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 33/86 (38%), Positives = 47/86 (54%), Frame = +1
Query: 127 IGDGTVSYGMDDADDIYMQSWTGTIIGPPGL----KLF-----CSRDYPDNPPSVRFQTR 279
+ D +VSYG+ + D W GTIIGP ++F C +YP+ P V FQ++
Sbjct: 1 LSDQSVSYGLANGQDNSFTDWNGTIIGPANTNFDNRIFFLTIKCGENYPNQAPIVHFQSK 60
Query: 280 INMTCVNQETGVVEPHLFPMLANLGN 357
+N+ CVNQ G VEP+ F + N N
Sbjct: 61 VNLPCVNQANGKVEPNKFSVFQNWNN 86
>gi|2689610|gb|AAC02756.1| (U97281) UEV1As [Homo sapiens]
Length = 103
Frame 1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | | | 103
0 20 40 60 80 100
Plus Strand HSPs:
Score = 116 (40.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 26/67 (38%), Positives = 37/67 (55%), Frame = +1
Query: 166 DDIYMQSWTGTIIGPP---GLKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFP 336
+D+ ++++T I LK+ C YP+ PP VRF T+INM VN GVV+P
Sbjct: 3 EDLNLENFTAKTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAIS 62
Query: 337 MLANLGN 357
+LA N
Sbjct: 63 VLAKWQN 69
>gi|1215737|gb|AAC02757.1| (U49278) UEV-1 [Homo sapiens]
Length = 76
Frame 1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 76
0 20 40 60
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.00015, P = 0.00015
Identities = 20/39 (51%), Positives = 24/39 (61%), Frame = +1
Query: 241 YPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANLGN 357
YP+ PP VRF T+INM VN GVV+P +LA N
Sbjct: 4 YPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQN 42
>gi|1717850|sp|P52483|UB6B_MOUSE UBIQUITIN-CONJUGATING ENZYME E2-23 KD
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|1072386|emb|CAA63352.1| (X92664) ubiquitin-conjugating enzyme
UbcM2 [Mus musculus]
Length = 207
Frame 1 hits (HSPs): ______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 102..149
DOMO DM00225: UBIQUITIN-CONJUGATINGENZYMES 59..206
Entrez binding site: UBIQUITIN (BY SIMILARITY). 145
PFAM UQ_con: Ubiquitin-conjugating enzyme 59..204
PRODOM PD073724: UB6B_MOUSE 1..50
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 52..203
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 134..148
__________________
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.0012, P = 0.0012
Identities = 25/57 (43%), Positives = 32/57 (56%), Frame = +1
Query: 166 DDIYMQSWTGTIIGPPG---------LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVV 318
D+IY W TI+GPPG L + S DYP PP V F+TRI +N + GV+
Sbjct: 88 DNIY--EWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQ-GVI 144
>gi|5454146 ref|NP_006348.1| ubiquitin-conjugating enzyme E2E 3 (homologous to
yeast UBC4/5) >gi|6678477 ref|NP_033480.1|| ubiquitin-conjugating
enzyme 4 >gi|2190990|gb|AAB60948.1| (AF003346)
ubiquitin-conjugating enzyme UbcM2 [Mus musculus]
>gi|4586930|dbj|BAA76544.1| (AB017644) ubiquitin-conjugating enzyme
E2 [Homo sapiens] >gi|5114059|gb|AAD40197.1| (AF085362) UbcM2 [Homo
sapiens]
Length = 207
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.0012, P = 0.0012
Identities = 25/57 (43%), Positives = 32/57 (56%), Frame = +1
Query: 166 DDIYMQSWTGTIIGPPG---------LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVV 318
D+IY W TI+GPPG L + S DYP PP V F+TRI +N + GV+
Sbjct: 88 DNIY--EWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQ-GVI 144
>gi|4507779 ref|NP_003332.1| ubiquitin-conjugating enzyme E2E 1 (homologous to
yeast UBC4/5) >gi|1717857|sp|P51965|UBC6_HUMAN
UBIQUITIN-CONJUGATING ENZYME E2-21 KD UBCH6 (UBIQUITIN-PROTEIN
LIGASE) (UBIQUITIN CARRIER PROTEIN) >gi|1064914|emb|CAA63539.1|
(X92963) ubiquitin-conjugating enzyme UbcH6 [Homo sapiens]
Length = 193
Frame 1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 193
0 50 100 150
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.0013, P = 0.0013
Identities = 34/97 (35%), Positives = 50/97 (51%), Frame = +1
Query: 64 SSVVVPRNFRLLQ-ELERGEKGIGDGTV------SYGMDDADDIYMQSWTGTIIGPPG-- 216
S V + +N +LL +R +K + D T+ S G D+IY W TI+GPPG
Sbjct: 34 SKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAG-PKGDNIY--EWRSTILGPPGSV 90
Query: 217 -------LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVV 318
L + + +YP PP V F+TRI +N + GV+
Sbjct: 91 YEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQ-GVI 130
>gi|6678479 ref|NP_033481.1| ubiquitin-conjugating enzyme 5
>gi|1717858|sp|P52482|UBC6_MOUSE UBIQUITIN-CONJUGATING ENZYME E2-21
KD UBCH6 (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|1072388|emb|CAA63353.1| (X92665) ubiquitin-conjugating enzyme
UbcM3 [Mus musculus]
Length = 193
Frame 1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 193
0 50 100 150
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.0013, P = 0.0013
Identities = 34/97 (35%), Positives = 50/97 (51%), Frame = +1
Query: 64 SSVVVPRNFRLLQ-ELERGEKGIGDGTV------SYGMDDADDIYMQSWTGTIIGPPG-- 216
S V + +N +LL +R +K + D T+ S G D+IY W TI+GPPG
Sbjct: 34 SKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAG-PKGDNIY--EWRSTILGPPGSV 90
Query: 217 -------LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVV 318
L + + +YP PP V F+TRI +N + GV+
Sbjct: 91 YEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQ-GVI 130
>gi|1717854|sp|P52485|UBC2_DROME UBIQUITIN-CONJUGATING ENZYME E2-24 KD
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|1072368|emb|CAA63351.1| (X92663) ubiquitin-conjugating enzyme
UbcD2 [Drosophila melanogaster] >gi|7297757|gb|AAF53008.1|
(AE003629) UbcD2 gene product [Drosophila melanogaster]
Length = 232
Frame 1 hits (HSPs): _____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 232
0 50 100 150 200
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 127..174
Entrez binding site: UBIQUITIN (BY SIMILARITY). 170
PFAM UQ_con: Ubiquitin-conjugating enzyme 80..229
PRODOM PD073738: UBC2_DROME 1..74
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 76..228
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 159..173
__________________
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.0058, P = 0.0058
Identities = 23/57 (40%), Positives = 32/57 (56%), Frame = +1
Query: 166 DDIYMQSWTGTIIGPPG---------LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGVV 318
D++Y W TI+GPPG L + S +YP PP V F+TRI +N + GV+
Sbjct: 113 DNLY--EWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQ-GVI 169
>gi|6815106|dbj|BAA90392.1| (AP001081) EST AU029921(E50230) corresponds to a
region of the predicted gene.; Similar to PDB ID: 1U9B: MOL_ID: 1;
MOLECULE: ubiquitin conjugating enzyme [Oryza sativa]
Length = 191
Frame 1 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 191
0 50 100 150
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.067, P = 0.065
Identities = 34/76 (44%), Positives = 40/76 (52%), Frame = +1
Query: 52 GSEGSSVVVPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPG----- 216
G+EG SVV R RL EL G GD VS + D+I+ SW GTI G
Sbjct: 42 GAEGQSVV--R--RLQSELMALMMG-GDPGVS-AFPEGDNIF--SWVGTIAGSAATAYEG 93
Query: 217 ----LKLFCSRDYPDNPPSVRFQT 276
L L +YP PP VRF+T
Sbjct: 94 TSYRLSLAFPGEYPYKPPKVRFET 117
>gi|2612962|gb|AAB84397.1| (AF026506) ubiquitin-conjugating enzyme [Drosophila
silvestris]
Length = 103
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | | 103
0 20 40 60 80 100
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.10, P = 0.099
Identities = 20/57 (35%), Positives = 26/57 (45%), Frame = +1
Query: 166 DDIYMQSWTGTIIGPPG---------LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGV 315
DD++ W TI+GPP L + DYP PP V F TRI +N +
Sbjct: 28 DDLF--HWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
>gi|546253|gb|AAB30420.1| chymase [human, skin, Peptide Partial, 52 aa, segment
3 of 3]
Length = 52
Frame 3 hits (HSPs): ___________
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 52
0 20 40
Plus Strand HSPs:
Score = 44 (15.5 bits), Expect = 0.62, Sum P(2) = 0.46
Identities = 8/14 (57%), Positives = 9/14 (64%), Frame = +1
Query: 124 GIGDGTVSYGMDDA 165
G+ G VSYG DA
Sbjct: 15 GVAQGIVSYGRSDA 28
Score = 36 (12.7 bits), Expect = 0.62, Sum P(2) = 0.46
Identities = 5/11 (45%), Positives = 7/11 (63%), Frame = +3
Query: 201 HWAPWFEIVLQ 233
H+ PW +LQ
Sbjct: 39 HYRPWINQILQ 49
>gi|3860012|gb|AAC72956.1| (AF091087) unknown [Homo sapiens]
Length = 46
Frame -2 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 46
0 20 40
Minus Strand HSPs:
Score = 64 (22.5 bits), Expect = 1.0, P = 0.64
Identities = 14/34 (41%), Positives = 21/34 (61%), Frame = -2
Query: 285 VNPCLKSNRWRIVWIIPAAKQFQTRGPNDSPSPR 184
V+P + S+RWR+ W P A + + NDS +PR
Sbjct: 6 VSP-VPSSRWRVTW--PRAARKRNISSNDSQAPR 36
>gi|7446211|pir||T13578 ubiquitin-conjugating enzyme (EC 6.3.2.-) - fruit fly
(Drosophila melanogaster) >gi|4200303|emb|CAA22948.1| (AL035311)
1-evidence=predicted by
content~1-method=genefinder;084~1-method_score=28.15~1-evidence_end
~2-evidence=predicted by
match~2-match_accession=SWISS-PROT:P51966~2-match_description=UBIQU
ITIN-CONJUGATING ENZYME E2-18 KD UBCH7 (EC 6.3.2.19) (UBIQ>
>gi|4584571|emb|CAB40790.1| (AJ238007) ubiquitin-conjugating enzyme
[Drosophila melanogaster] >gi|7302709|gb|AAF57787.1| (AE003802)
UbcD10 gene product [Drosophila melanogaster]
Length = 154
Frame 1 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 154
0 50 100 150
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 1.4, P = 0.74
Identities = 28/88 (31%), Positives = 45/88 (51%), Frame = +1
Query: 70 VVVPRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTII--GPP---G---LKL 225
+ PR RL +EL + G+ S+ ADD + WTG I+ PP G +++
Sbjct: 1 MTAPR--RLRKELSDLQ---GNALKSFRDIKADDDNLLRWTGLIVPDNPPYNKGAFRIEI 55
Query: 226 FCSRDYPDNPPSVRFQTRINMTCVNQETGVVEP 324
+YP PP + F+TRI ++++ V P
Sbjct: 56 NFPAEYPFKPPKINFKTRIYHPNIDEKGQVCLP 88
>gi|136643|sp|P25867|UBC1_DROME UBIQUITIN-CONJUGATING ENZYME E2-17 KD
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN) (EFFETE
PROTEIN) >gi|103438|pir||S19157 ubiquitin-conjugating enzyme -
fruit fly (Drosophila melanogaster) >gi|8783|emb|CAA44453.1|
(X62575) ubiquitin-conjugating enzyme [Drosophila melanogaster]
>gi|7299919|gb|AAF55093.1| (AE003706) eff gene product [alt 2]
[Drosophila melanogaster] >gi|7299920|gb|AAF55094.1| (AE003706) eff
gene product [alt 1] [Drosophila melanogaster]
Length = 147
Frame 1 hits (HSPs): ____________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 42..89
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..144
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 2..143
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 2.4, P = 0.91
Identities = 20/57 (35%), Positives = 26/57 (45%), Frame = +1
Query: 166 DDIYMQSWTGTIIGPPG---------LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGV 315
DD++ W TI+GPP L + DYP PP V F TRI +N +
Sbjct: 28 DDLF--HWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
>gi|464979|sp|P35129|UBC2_CAEEL UBIQUITIN-CONJUGATING ENZYME E2-17 KD
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|7506114|pir||T23820 hypothetical protein M7.1 - Caenorhabditis
elegans >gi|3878673|emb|CAA92745.1| (Z68337) similar to
ubiquitin-conjugating enzyme E2-17 KD~cDNA EST EMBL:D70429 comes
from this gene~cDNA EST CEMSE48F comes from this gene~cDNA EST
EMBL:T00827 comes from this gene~cDNA EST EMBL:T01271 comes from
this gene~cDNA EST EMBL:D66597 comes fr> >gi|7327273|gb|AAB25489.2|
(S56051) ubiquitin-conjugating enzyme [Caenorhabditis elegans]
Length = 147
Frame 1 hits (HSPs): ____________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 42..89
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..144
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 2..143
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 2.4, P = 0.91
Identities = 21/57 (36%), Positives = 27/57 (47%), Frame = +1
Query: 166 DDIYMQSWTGTIIGPP-----G----LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGV 315
DD++ W TI+GPP G L + DYP PP V F TRI +N +
Sbjct: 28 DDLF--HWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
>gi|477134|pir||A48145 ubiquitin-conjugating enzyme ubc-2 - Caenorhabditis
elegans
Length = 147
Frame 1 hits (HSPs): ____________________
Annotated Domains: ______
__________________________________________________
Database sequence: | | | | 147
0 50 100
__________________
Annotated Domains:
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 2.4, P = 0.91
Identities = 21/57 (36%), Positives = 27/57 (47%), Frame = +1
Query: 166 DDIYMQSWTGTIIGPP-----G----LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGV 315
DD++ W TI+GPP G L + DYP PP V F TRI +N +
Sbjct: 28 DDLF--HWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 84
>gi|464984|sp|P34477|UBC7_CAEEL PROBABLE UBIQUITIN-CONJUGATING ENZYME E2-19 KD
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|482189|pir||S40982 hypothetical protein F58A4.10 -
Caenorhabditis elegans >gi|3877825|emb|CAA80166.1| (Z22179) similar
to ubiquitin conjugating enzymes~cDNA EST yk381a9.3 comes from this
gene~cDNA EST yk486g12.5 comes from this gene~cDNA EST yk381a9.5
comes from this gene [Caenorhabditis elegans]
Length = 164
Frame 1 hits (HSPs): _____________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 164
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 45..92
DOMO DM00225: UBIQUITIN-CONJUGATINGENZYMES 1..162
Entrez binding site: UBIQUITIN (BY SIMILARITY). 88
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..160
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 5..159
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 77..91
__________________
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 2.4, P = 0.91
Identities = 24/67 (35%), Positives = 33/67 (49%), Frame = +1
Query: 133 DGTVSYGMDDADDIYMQSWTGTIIGPPG-------LKLFCS--RDYPDNPPSVRFQTRIN 285
DG S G+ D +DIY W +IGPP K RDYP PP ++F + I
Sbjct: 21 DG-FSAGLVDDNDIY--KWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIW 77
Query: 286 MTCVNQETGV 315
+++E V
Sbjct: 78 HPNIDKEGNV 87
>gi|7437989|pir||T01329 ubiquitin-conjugating enzyme E2 - maize
>gi|2641619|gb|AAC12662.1| (AF032468) ubiquitin-conjugating enzyme
protein E2 [Zea mays]
Length = 169
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 169
0 50 100 150
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 3.6, P = 0.97
Identities = 27/70 (38%), Positives = 39/70 (55%), Frame = +1
Query: 94 LLQ-ELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP----------GLKLFCSRD 240
LLQ +L+ K DG S G+ D +I+ W TIIGPP + F ++
Sbjct: 11 LLQKQLKDLAKNPVDG-FSAGLVDDSNIF--EWQVTIIGPPDTLYDGGYFNAIMTF-PQN 66
Query: 241 YPDNPPSVRFQTRI 282
YP++PPSVRF + +
Sbjct: 67 YPNSPPSVRFTSEM 80
>gi|6714370|gb|AAF26060.1|AC012562_15 (AC012562) putative ubiquitin conjugating
enzyme [Arabidopsis thaliana]
Length = 148
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 3.6, P = 0.97
Identities = 26/80 (32%), Positives = 40/80 (50%), Frame = +1
Query: 91 RLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP------GLKLFCSR---DY 243
R+L+EL+ +K S G A+D++ W TI+GPP G+ L DY
Sbjct: 5 RILKELKDLQKD-PPSNCSAG-PVAEDMF--HWQATIMGPPESPYAGGVFLVSIHFPPDY 60
Query: 244 PDNPPSVRFQTRINMTCVNQETGV 315
P PP V F+T++ +N +
Sbjct: 61 PFKPPKVSFKTKVYHPNINSNGSI 84
>gi|5052496|gb|AAD38578.1|AF145603_1 (AF145603) BcDNA.GH02435 [Drosophila
melanogaster] >gi|7295708|gb|AAF51013.1| (AE003576) BcDNA:GH02435
gene product [Drosophila melanogaster]
Length = 491
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 491
0 150 300 450
Plus Strand HSPs:
Score = 79 (27.8 bits), Expect = 3.8, P = 0.98
Identities = 28/97 (28%), Positives = 44/97 (45%), Frame = +1
Query: 112 RGEKGIGDGTVSYGMDDAD-DIYMQSWTGTIIGPPG---------LKLFCSRDYPDNPPS 261
RGE + + S G+ D W TI+GPPG L ++ YP PP+
Sbjct: 343 RGEANLLNSYESEGISAIPLDRQNNYWQATILGPPGSPYEGGKFFLFIYFPERYPMTPPT 402
Query: 262 VRFQTRINMTCVNQ--ETGV--VEPHLFPMLANLGNV 360
VRF T+I V++ + G+ + H + + N+ V
Sbjct: 403 VRFLTKILHPNVSRHGDVGIDIFQQHNWSLALNVAKV 439
>gi|6996506|emb|CAB75567.1| (AL139794) ubiquitin-conjugating enzyme E2
[Leishmania major]
Length = 148
Frame 1 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 4.9, P = 0.99
Identities = 25/69 (36%), Positives = 35/69 (50%), Frame = +1
Query: 91 RLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPP-----G----LKLFCSRDY 243
R+++E E+ +K G + + +M TI GPP G L+LF +Y
Sbjct: 5 RIIKETEKLQKECPPGITATPTKENPRYFMV----TIQGPPQSCYEGGLFRLELFLPEEY 60
Query: 244 PDNPPSVRFQTRI 282
P PP VRF TRI
Sbjct: 61 PMKPPKVRFLTRI 73
>gi|1850816|emb|CAA72184.1| (Y11349) ubiquitin conjugating enzyme [Drosophila
melanogaster] >gi|7294892|gb|AAF50222.1| (AE003551) UbcD4 gene
product [Drosophila melanogaster]
Length = 199
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 5.1, P = 0.99
Identities = 22/62 (35%), Positives = 29/62 (46%), Frame = +1
Query: 169 DIYMQSWT---GTIIGPPG---------LKLFCSRDYPDNPPSVRFQTRINMTCVNQETG 312
++ SWT G I GPP L++ YP NPP VRF TRI ++ TG
Sbjct: 30 ELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTG 89
Query: 313 VV 318
+
Sbjct: 90 AI 91
>gi|106346|pir||S17516 hypothetical protein - human
Length = 151
Frame 1 hits (HSPs): _________________________
Annotated Domains: ______
__________________________________________________
Database sequence: | | | || 151
0 50 100 150
__________________
Annotated Domains:
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 76..90
__________________
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 5.2, P = 0.99
Identities = 24/72 (33%), Positives = 39/72 (54%), Frame = +1
Query: 79 PRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPG---------LKLFC 231
P RL+++ +R ++ D G ++I MQ W IIGP G L +
Sbjct: 4 PARRRLMRDFKRLQE---DPPCVSGAPSENNI-MQ-WNAVIIGPEGTPFEDGTFRLVIEF 58
Query: 232 SRDYPDNPPSVRFQTRI 282
S +YP+ PP+VRF +++
Sbjct: 59 SEEYPNKPPTVRFLSKM 75
>gi|539493|pir||S29198 echistatin - saw-scaled viper (fragments)
Length = 46
Frame -1 hits (HSPs): _________
Frame -3 hits (HSPs): ____________________________
Annotated Domains: _____________________
__________________________________________________
Database sequence: | | | | 46
0 20 40
__________________
Annotated Domains:
PROSITE DISINTEGRINS: Disintegrins signature. 2..21
__________________
Minus Strand HSPs:
Score = 37 (13.0 bits), Expect = 5.2, Sum P(2) = 0.99
Identities = 9/26 (34%), Positives = 12/26 (46%), Frame = -3
Query: 101 CNNLKFLGTTTLDPSEPITIMKNSKT 24
C N KFL T+ + + N KT
Sbjct: 8 CRNCKFLKEGTICKGDDMDDYCNGKT 33
Score = 35 (12.3 bits), Expect = 5.2, Sum P(2) = 0.99
Identities = 4/9 (44%), Positives = 6/9 (66%), Frame = -1
Query: 253 DCLDNPCCK 227
+C PCC+
Sbjct: 1 ECESGPCCR 9
>gi|136636|sp|P25865|UBC1_ARATH UBIQUITIN-CONJUGATING ENZYME E2-17 KD 1
(UBIQUITIN-PROTEIN LIGASE 1) (UBIQUITIN CARRIER PROTEIN 1)
>gi|1076424|pir||S43781 ubiquitin-conjugating enzyme UBC1 -
Arabidopsis thaliana >gi|2981894|pdb|2AAK| Ubiquitin Conjugating
Enzyme From Arabidopsis Thaliana >gi|166924|gb|AAA32903.1| (M62721)
ubiquitin carrier protein [Arabidopsis thaliana]
>gi|431260|gb|AAA32897.1| (L19351) ubiquitin conjugating enzyme
[Arabidopsis thaliana] >gi|7262682|gb|AAF43940.1|AC012188_17
(AC012188) Strong similarity to a Ubiquitin-conjugating Enzyme
(E2-17 KD 1) from Arabidopsis thaliana gi|136636 and contains a
Ubiqutin-conjugating Enzyme PF|00179 domain. ESTs gb|AA728508,
gb|H36735, gb|AI100736 come from this gene
Length = 152
Frame 1 hits (HSPs): _________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | || 152
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 45..92
DOMO DM00225: UBIQUITIN-CONJUGATINGENZYMES 2..149
Entrez binding site: UBIQUITIN (BY SIMILARITY). 88
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..147
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 1..146
PROSITE G_BETA_REPEATS: Beta-transducin family T 24..38
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 77..91
__________________
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 5.3, P = 0.99
Identities = 26/73 (35%), Positives = 40/73 (54%), Frame = +1
Query: 79 PRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGP---P--G----LKLFC 231
P RL+++ +R ++ G +S G ++I + W I GP P G L L
Sbjct: 4 PARKRLMRDFKRLQQDPPAG-IS-GAPQDNNIML--WNAVIFGPDDTPWDGGTFKLSLQF 59
Query: 232 SRDYPDNPPSVRFQTRI 282
S DYP+ PP+VRF +R+
Sbjct: 60 SEDYPNKPPTVRFVSRM 76
>gi|1174844|sp|P42745|UBC2_ARATH UBIQUITIN-CONJUGATING ENZYME E2-17 KD 2
(UBIQUITIN-PROTEIN LIGASE 2) (UBIQUITIN CARRIER PROTEIN 2)
>gi|1076426|pir||S43783 ubiquitin-conjugating enzyme UBC2 -
Arabidopsis thaliana >gi|431264|gb|AAA32899.1| (L19353) ubiquitin
conjugating enzyme [Arabidopsis thaliana]
>gi|2689243|emb|CAA73476.1| (Y13031) ubiquitin conjugating enzyme
[Arabidopsis thaliana] >gi|2947065|gb|AAC05346.1| (AC002521)
putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
Length = 152
Frame 1 hits (HSPs): _________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | || 152
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 45..92
Entrez binding site: UBIQUITIN (BY SIMILARITY). 88
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..147
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 1..146
PROSITE G_BETA_REPEATS: Beta-transducin family T 24..38
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 77..91
__________________
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 5.3, P = 0.99
Identities = 26/73 (35%), Positives = 40/73 (54%), Frame = +1
Query: 79 PRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGP---P--G----LKLFC 231
P RL+++ +R ++ G +S G ++I + W I GP P G L L
Sbjct: 4 PARKRLMRDFKRLQQDPPAG-IS-GAPQDNNIML--WNAVIFGPDDTPWDGGTFKLSLQF 59
Query: 232 SRDYPDNPPSVRFQTRI 282
S DYP+ PP+VRF +R+
Sbjct: 60 SEDYPNKPPTVRFVSRM 76
>gi|4507771 ref|NP_003328.1| ubiquitin-conjugating enzyme E2B (RAD6 homolog)
>gi|6678485 ref|NP_033484.1|| ubiquitin-conjugating enzyme E2B
(RAD6 homology) >gi|136638|sp|P23567|UBC2_HUMAN
UBIQUITIN-CONJUGATING ENZYME E2-17 KD (UBIQUITIN-PROTEIN LIGASE)
(UBIQUITIN CARRIER PROTEIN) (HR6B) >gi|108017|pir||B41222
ubiquitin--protein ligase (EC 6.3.2.19) E2B - human
>gi|284677|pir||A42416 ubiquitin carrier protein E2 - rabbit
>gi|2143552|pir||I51913 14 kDa ubiquitin conjugating enzyme - rat
>gi|30954|emb|CAA37339.1| (X53251) E2 protein [Homo sapiens]
>gi|165780|gb|AAA31492.1| (M62387) ubiquitin conjugating-protein
[Oryctolagus cuniculus] >gi|184046|gb|AAA35982.1| (M74525) HHR6B
(Human homologue of yeast RAD 6); putative [Homo sapiens]
>gi|207555|gb|AAA21087.1| (M62388) ubiquitin conjugating-protein
[Rattus norvegicus] >gi|476117|gb|AAB60669.1| (U04308) 14 kDa
ubiquitin conjugating enzyme [Rattus norvegicus]
>gi|1237240|emb|CAA65602.1| (X96859) ubiquitin-conjugating enzym
[Mus musculus] >gi|1373353|gb|AAC52884.1| (U57690) E214K [Mus
musculus] >gi|5019992|gb|AAD37966.1|AF144083_1 (AF144083)
ubiquitin-conjugating enzyme [Rattus norvegicus]
>gi|745378|prf||2016220A ubiquitin-conjugating
enzyme:ISOTYPE=E2-14k [Rattus norvegicus]
Length = 152
Frame 1 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | || 152
0 50 100 150
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 7.2, P = 1.0
Identities = 26/73 (35%), Positives = 40/73 (54%), Frame = +1
Query: 79 PRNFRLLQELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPG-------LKLFC-- 231
P RL+++ +R ++ G VS G ++I MQ W I GP G KL
Sbjct: 4 PARRRLMRDFKRLQEDPPVG-VS-GAPSENNI-MQ-WNAVIFGPEGTPFEDGTFKLVIEF 59
Query: 232 SRDYPDNPPSVRFQTRI 282
S +YP+ PP+VRF +++
Sbjct: 60 SEEYPNKPPTVRFLSKM 76
>gi|3980408|gb|AAC95211.1| (AC004561) hypothetical protein [Arabidopsis
thaliana]
Length = 992
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | 992
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 79 (27.8 bits), Expect = 8.9, P = 1.0
Identities = 30/109 (27%), Positives = 47/109 (43%), Frame = +1
Query: 52 GSEGSSVVVPRNFRLLQELERGEKGIGD---GTVSYGMDDADDIYMQSWTGTIIGP--PG 216
G +GSS+VV N R+ Q E G D G V + ++DA+ + G + P PG
Sbjct: 444 GKKGSSLVVLDNGRVAQSKENSGSGFIDQVLGEVMHDINDAEPTQTTTPIGRLSPPTRPG 503
Query: 217 LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGV-VEPHLFPMLANLGNV 360
L+ R +N P+ + + E V + H+ P N+ V
Sbjct: 504 LRSSLKRKRGNNGPTAATILTPAVDNSSAEKSVSADKHVSPEAVNINKV 552
>gi|992706|gb|AAC49322.1| (U33758) UBC13 [Arabidopsis thaliana]
>gi|6522625|emb|CAB62037.1| (AL133298) ubiquitin conjugating enzyme
E2 (UBC13) [Arabidopsis thaliana]
Length = 166
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 166
0 50 100 150
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 9.0, P = 1.0
Identities = 22/56 (39%), Positives = 33/56 (58%), Frame = +1
Query: 133 DGTVSYGMDDADDIYMQSWTGTIIGPPGLK----LFCS-----RDYPDNPPSVRFQTRI 282
DG S G+ D +I+ W+ TIIGPP F + ++YP++PP+VRF + I
Sbjct: 22 DG-FSAGLVDEKNIF--EWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDI 77
>gi|7485987|pir||T00730 hypothetical protein F22O13.25 - Arabidopsis thaliana
>gi|3063463|gb|AAC14051.1| (AC003981) F22O13.25 [Arabidopsis
thaliana]
Length = 1015
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | | 1015
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 79 (27.8 bits), Expect = 9.1, P = 1.0
Identities = 30/109 (27%), Positives = 47/109 (43%), Frame = +1
Query: 52 GSEGSSVVVPRNFRLLQELERGEKGIGD---GTVSYGMDDADDIYMQSWTGTIIGP--PG 216
G +GSS+VV N R+ Q E G D G V + ++DA+ + G + P PG
Sbjct: 444 GKKGSSLVVLDNGRVAQSKENSGSGFIDQVLGEVMHDINDAEPTQTTTPIGRLSPPTRPG 503
Query: 217 LKLFCSRDYPDNPPSVRFQTRINMTCVNQETGV-VEPHLFPMLANLGNV 360
L+ R +N P+ + + E V + H+ P N+ V
Sbjct: 504 LRSSLKRKRGNNGPTAATILTPAVDNSSAEKSVSADKHVSPEAVNINKV 552
>gi|1174849|sp|P46595|UBC4_SCHPO UBIQUITIN-CONJUGATING ENZYME E2-16 KD
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|7493572|pir||T39300 ubiquitin-conjugating enzyme - fission
yeast (Schizosaccharomyces pombe) >gi|2959363|emb|CAA17917.1|
(AL022117) ubiquitin-conjugating enzyme e2-16 kd
[Schizosaccharomyces pombe]
Length = 147
Frame 1 hits (HSPs): ____________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 42..89
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..144
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 2..143
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 9.4, P = 1.0
Identities = 22/57 (38%), Positives = 27/57 (47%), Frame = +1
Query: 166 DDIYMQSWTGTIIGP---P--GLKLFCS----RDYPDNPPSVRFQTRINMTCVNQETGV 315
DD++ W TI+GP P G F S DYP PP V F TRI +N +
Sbjct: 28 DDLF--HWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSI 84
>gi|2668744|gb|AAB88617.1| (AF034946) ubiquitin conjugating enzyme [Zea mays]
Length = 148
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 9.6, P = 1.0
Identities = 24/80 (30%), Positives = 39/80 (48%), Frame = +1
Query: 91 RLLQELERGEKGIGDGTVSYGMDDA-DDIYMQSWTGTIIGPPG---------LKLFCSRD 240
R+L+EL+ +K D S A +D++ W TI+GPP + + D
Sbjct: 5 RILKELKDLQK---DPPTSCSAGPAGEDMF--HWQATIMGPPDSPYAGGVFLVNIHFPPD 59
Query: 241 YPDNPPSVRFQTRINMTCVNQETGV 315
YP PP V F+T++ +N +
Sbjct: 60 YPFKPPKVSFKTKVFHPNINSNGSI 84
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.367 0.162 0.707
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.347 0.154 0.548
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.326 0.146 0.462
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.374 0.166 0.644
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.329 0.140 0.453
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.342 0.152 0.498
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 121 120 10. 70 3 12 22 0.097 33
29 0.11 35
+2 0 122 121 10. 70 3 12 22 0.098 33
29 0.11 35
+1 0 122 121 10. 70 3 12 22 0.098 33
29 0.11 35
-1 0 122 121 10. 70 3 12 22 0.098 33
29 0.11 35
-2 0 122 121 10. 70 3 12 22 0.098 33
29 0.11 35
-3 0 121 120 10. 70 3 12 22 0.097 33
29 0.11 35
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 50
No. of states in DFA: 598 (59 KB)
Total size of DFA: 176 KB (192 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 170.48u 1.21s 171.69t Elapsed: 00:00:44
Total cpu time: 170.53u 1.32s 171.85t Elapsed: 00:00:45
Start: Thu Feb 15 01:45:20 2001 End: Thu Feb 15 01:46:05 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000