R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|6091731|gb|AAF03443.1|AC010797_19 (AC010797) hypothetical protein
[Arabidopsis thaliana]
Length = 307
Frame 3 hits (HSPs): ______________
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | | | 307
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 528 (185.9 bits), Expect = 1.2e-78, Sum P(2) = 1.2e-78
Identities = 97/127 (76%), Positives = 109/127 (85%), Frame = +2
Query: 284 SS*PLSILCHSFRDIDKYTAGFPRGDGQGHANLFKAVKHYLPGPYTFILIASKELPKQCI 463
SS PLSILC S RDID +T GFPRGDG GHAN+F+AVK LPGPYTFIL ASKELPKQC+
Sbjct: 127 SSKPLSILCRSLRDIDTFTMGFPRGDGHGHANVFRAVKQCLPGPYTFILTASKELPKQCV 186
Query: 464 RFGTSSAKYASRKNVGVRMPDDAICQAILKEMDAPLICTSIKFQKEDEWMIDPVMIADTY 643
+GT+S KYASRKNVGVR+ DDA+CQAIL++MDAPLICTS+K KE+EWMIDP I D Y
Sbjct: 187 GYGTTSVKYASRKNVGVRISDDALCQAILQQMDAPLICTSVKGPKENEWMIDPTAIGDIY 246
Query: 644 GPEGLDF 664
GPEGLDF
Sbjct: 247 GPEGLDF 253
Score = 291 (102.4 bits), Expect = 1.2e-78, Sum P(2) = 1.2e-78
Identities = 58/87 (66%), Positives = 69/87 (79%), Frame = +3
Query: 36 PRRISGLVSMVAKRSPKRLKYTSASRFTKEDGLVYIEADPSASDSWKLEPIANLLKQGAV 215
PRR +V++ AKRSPKRLKY S RFTKE LVYIE DP DSWKL+P+ +LLKQGAV
Sbjct: 39 PRRY--IVALAAKRSPKRLKY-STPRFTKEGELVYIEVDPCGVDSWKLQPVIDLLKQGAV 95
Query: 216 GVIPTDTMYAIVCDLRSQSAIERLRSL 296
GVIPTDT+YAI CD ++ SA+ERLR +
Sbjct: 96 GVIPTDTVYAIACDCKNHSAVERLRRI 122
>gi|6513939|gb|AAF14843.1|AC011664_25 (AC011664) hypothetical protein
[Arabidopsis thaliana]
Length = 297
Frame 3 hits (HSPs): _______________________
Frame 2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | | 297
0 50 100 150 200 250
Plus Strand HSPs:
Score = 351 (123.6 bits), Expect = 3.8e-65, Sum P(2) = 3.8e-65
Identities = 64/83 (77%), Positives = 73/83 (87%), Frame = +2
Query: 416 YTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMDAPLICTSIKFQ 595
YTFIL ASKELPKQC+ +GT+S KYASRKNVGVR+ DDA+CQAIL++MDAPLICTS+K
Sbjct: 161 YTFILTASKELPKQCVGYGTTSVKYASRKNVGVRISDDALCQAILQQMDAPLICTSVKGP 220
Query: 596 KEDEWMIDPVMIADTYGPEGLDF 664
KE+EWMIDP I D YGPEGLDF
Sbjct: 221 KENEWMIDPTAIGDIYGPEGLDF 243
Score = 340 (119.7 bits), Expect = 3.8e-65, Sum P(2) = 3.8e-65
Identities = 78/130 (60%), Positives = 92/130 (70%), Frame = +3
Query: 36 PRRISGLVSMVAKRSPKRLKYTSASRFTKEDGLVYIEADPSASDSWKLEPIANLLKQGAV 215
PRR +V++ AKRSPKRLKY S RFTKE LVYIE DP DSWKL+P+ +LLKQGAV
Sbjct: 39 PRRY--IVALAAKRSPKRLKY-STPRFTKEGELVYIEVDPCGVDSWKLQPVIDLLKQGAV 95
Query: 216 GVIPTDTMYAIVCDLRSQSAIERLRSLLASCATHFGT*TSTQLDFHVVMVKAMQIYSKLL 395
GVIPTDT+YAI CD ++ SA+ERLRS LAS A + T Q F VVMV M + +L
Sbjct: 96 GVIPTDTVYAIACDCKNHSAVERLRSHLASYAVPYEILTLLQWAFLVVMVMVMLTFFELS 155
Query: 396 SITYL---VLTHS 425
S YL +LT S
Sbjct: 156 SNAYLYTFILTAS 168
>gi|11279554|pir||E81775 conserved hypothetical protein NMA2049 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7380677|emb|CAB85267.1| (AL162758) conserved hypothetical
protein [Neisseria meningitidis Z2491]
Length = 206
Frame 3 hits (HSPs): ___________
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 206
0 50 100 150 200
Plus Strand HSPs:
Score = 147 (51.7 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 31/85 (36%), Positives = 52/85 (61%), Frame = +2
Query: 383 FKAVKHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMD 562
F+ +K PGPYTFIL A+K++P + + + RK +G+R+PD+AI QA+L E+
Sbjct: 86 FRQLKAATPGPYTFILQATKDVPARTL--------HPKRKTIGLRIPDNAIAQALLGELG 137
Query: 563 APLICTSIKFQKEDEWMIDPVMIAD 637
PL+ ++ ++ E + DP I +
Sbjct: 138 EPLLSCTLMLPEDGEPLTDPYEIRE 162
Score = 76 (26.8 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 14/40 (35%), Positives = 26/40 (65%), Frame = +3
Query: 177 LEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERLRSL 296
++ ++ +G V V PTD+ YA+ C L ++A+ER+ S+
Sbjct: 17 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSI 56
>gi|11279555|pir||E81198 conserved hypothetical protein NMB0436 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7225661|gb|AAF40874.1| (AE002400) conserved hypothetical
protein [Neisseria meningitidis MC58]
Length = 213
Frame 3 hits (HSPs): __________
Frame 2 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | 213
0 50 100 150 200
Plus Strand HSPs:
Score = 147 (51.7 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 31/85 (36%), Positives = 52/85 (61%), Frame = +2
Query: 383 FKAVKHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMD 562
F+ +K PGPYTFIL A+K++P + + + RK +G+R+PD+AI QA+L E+
Sbjct: 93 FRQLKAATPGPYTFILQATKDVPARTL--------HPKRKTIGLRIPDNAIAQALLGELG 144
Query: 563 APLICTSIKFQKEDEWMIDPVMIAD 637
PL+ ++ ++ E + DP I +
Sbjct: 145 EPLLSCTLMLPEDGEPLTDPYEIRE 169
Score = 76 (26.8 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 14/40 (35%), Positives = 26/40 (65%), Frame = +3
Query: 177 LEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERLRSL 296
++ ++ +G V V PTD+ YA+ C L ++A+ER+ S+
Sbjct: 24 IKQAVEIVNKGGVVVYPTDSCYALGCKLGDKAAMERILSI 63
>gi|5688851|dbj|BAA82702.1| (AB017438) Orf5 [Streptomyces coelicolor]
Length = 200
Frame 3 hits (HSPs): __________
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 139 (48.9 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 31/87 (35%), Positives = 52/87 (59%), Frame = +2
Query: 377 NLFKAVKHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKE 556
++F+A+K PG YTFIL A++E+P+ + ++ +K VGVR+PD + QA+L E
Sbjct: 78 DVFRAIKASTPGSYTFILPATREVPR--------ALQHPKKKTVGVRIPDHVVTQALLAE 129
Query: 557 MDAPLICTSIKFQKEDEWMIDPVMIAD 637
+ PL+ +++ E+E M I D
Sbjct: 130 LGEPLLSSTLLLPDEEEPMTQGWEIKD 156
Score = 81 (28.5 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 15/37 (40%), Positives = 26/37 (70%), Frame = +3
Query: 186 IANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERLRSL 296
+A+ ++ GA+ PTD+ YA+ C L S+ I+R+RS+
Sbjct: 14 VADSVRSGALIAYPTDSCYALGCRLGSRDGIDRIRSI 50
>gi|8052373|emb|CAB92203.1| (AL356592) hypothetical protein SC9H11.14c.
[Streptomyces coelicolor A3(2)]
Length = 200
Frame 3 hits (HSPs): __________
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 139 (48.9 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 31/87 (35%), Positives = 52/87 (59%), Frame = +2
Query: 377 NLFKAVKHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKE 556
++F+A+K PG YTFIL A++E+P+ + ++ +K VGVR+PD + QA+L E
Sbjct: 78 DVFRAIKASTPGSYTFILPATREVPR--------ALQHPKKKTVGVRIPDHVVTQALLAE 129
Query: 557 MDAPLICTSIKFQKEDEWMIDPVMIAD 637
+ PL+ +++ E+E M I D
Sbjct: 130 LGEPLLSSTLLLPDEEEPMTQGWEIKD 156
Score = 81 (28.5 bits), Expect = 8.9e-14, Sum P(2) = 8.9e-14
Identities = 15/37 (40%), Positives = 26/37 (70%), Frame = +3
Query: 186 IANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERLRSL 296
+A+ ++ GA+ PTD+ YA+ C L S+ I+R+RS+
Sbjct: 14 VADSVRSGALIAYPTDSCYALGCRLGSRDGIDRIRSI 50
>gi|11347986|pir||B83244 conserved hypothetical protein PA3199 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9949319|gb|AAG06587.1|AE004744_2 (AE004744) conserved
hypothetical protein [Pseudomonas aeruginosa]
Length = 209
Frame 3 hits (HSPs): ______________
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | 209
0 50 100 150 200
Plus Strand HSPs:
Score = 132 (46.5 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 28/81 (34%), Positives = 49/81 (60%), Frame = +2
Query: 380 LFKAVKHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEM 559
LF+ +K + PGPYTFIL A++E+P+ + + R+ +G+R+P+ I +A+L+E+
Sbjct: 85 LFRLLKAHTPGPYTFILSATREVPRMLL--------HPKRRTIGLRVPNCPIARALLEEL 136
Query: 560 DAPLICTSIKFQKEDEWMIDP 622
PL+ S+ E + DP
Sbjct: 137 GEPLMSVSLIMPGSGEPLNDP 157
Score = 79 (27.8 bits), Expect = 9.5e-12, Sum P(2) = 9.5e-12
Identities = 14/53 (26%), Positives = 30/53 (56%), Frame = +3
Query: 138 YIEADPSASDSWKLEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERLRSL 296
+ + P ++ +++QG V V PTD+ YA+ C + ++A++R+R +
Sbjct: 4 FFQIHPENPQPRLVKQAVEIVRQGGVIVYPTDSSYALGCRIGEKTAVDRIRRI 56
>gi|602960|gb|AAB59987.1| (U18111) ORF1 [Escherichia coli]
Length = 183
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
Plus Strand HSPs:
Score = 125 (44.0 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 28/85 (32%), Positives = 48/85 (56%), Frame = +2
Query: 383 FKAVKHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMD 562
F+ +K+ PG YTFIL +KE+P++ ++ RK +G+R+P + I QA+L+ +
Sbjct: 63 FRLMKNNTPGNYTFILKGTKEVPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALG 114
Query: 563 APLICTSIKFQKEDEWMIDPVMIAD 637
P++ TS+ + DP I D
Sbjct: 115 EPMLSTSLMLPGSEFTESDPEEIKD 139
Score = 68 (23.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 12/30 (40%), Positives = 22/30 (73%), Frame = +3
Query: 198 LKQGAVGVIPTDTMYAIVCDLRSQSAIERL 287
+++G V V PTD+ YA+ C + ++A+ER+
Sbjct: 1 VRKGGVIVYPTDSGYALGCKIEDKNAMERI 30
>gi|7429866|pir||S74580 hypothetical protein sll0216 - Synechocystis sp.
(strain PCC 6803) >gi|1651805|dbj|BAA16732.1| (D90900) hypothetical
protein [Synechocystis sp.]
Length = 210
Frame 3 hits (HSPs): _______________________
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | 210
0 50 100 150 200
Plus Strand HSPs:
Score = 154 (54.2 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 38/117 (32%), Positives = 62/117 (52%), Frame = +2
Query: 293 PLSILCHSFRDIDKYTAGFPRGDGQGHANLFKAVKHYLPGPYTFILIASKELPKQCIRFG 472
PL+ LC S +I +Y D + ++ ++ +PGPYTF+L A+K++PK +
Sbjct: 64 PLTFLCSSLSNIAEYAVV---AD-----DAYRLMRKLIPGPYTFLLPATKQVPKLVVE-- 113
Query: 473 TSSAKYASRKNVGVRMPDDAICQAILKEMDAPLICTSIKFQKEDEW-MIDPVMIADTY 643
RK G+R+PD ICQ IL+ + P+I TS +DE+ M + + D +
Sbjct: 114 ------PKRKTTGIRVPDRPICQEILQSLGNPIISTSAHLPDQDEFVMAEKAKLFDLF 165
Score = 111 (39.1 bits), Expect = 0.0015, P = 0.0015
Identities = 31/92 (33%), Positives = 49/92 (53%), Frame = +3
Query: 153 PSASDSWKLEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERLRSL--LASCA--THF 320
P +E I L+QGA+ + PTDT+YAI CDL ++A++R+R L L++ T
Sbjct: 9 PETPQQRTVEMICKSLRQGAIMLYPTDTVYAIGCDLNDKNAVQRVRQLKQLSNNKPLTFL 68
Query: 321 GT*TSTQLDFHVVMVKAMQIYSKLLSITYLVL 416
+ S ++ VV A ++ KL+ Y L
Sbjct: 69 CSSLSNIAEYAVVADDAYRLMRKLIPGPYTFL 100
>gi|3915969|sp|P45847|YCIO_ECOLI 23.2 KDA PROTEIN IN TRPL-BTUR INTERGENIC
REGION
Length = 206
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): ____________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 206
0 50 100 150 200
__________________
Annotated Domains:
BLOCKS BL01147A: SUA5/yciO/yrdC family proteins 41..65
BLOCKS BL01147B: SUA5/yciO/yrdC family proteins 100..113
BLOCKS BL01147C: SUA5/yciO/yrdC family proteins 124..136
BLOCKS BL01147D: SUA5/yciO/yrdC family proteins 193..210
DOMO DM07922: HYPOTHETICALSUA5/YCIO/YRDCFAMIL 1..217
PFAM Sua5_yciO_yrdC: SUA5/yciO/yrdC family 22..198
PRODOM PD002209: HYPF(6) YD01(2) YCIO(2) 19..197
PROSITE SUA5: SUA5/yciO/yrdC family signature. 29..41
__________________
Plus Strand HSPs:
Score = 125 (44.0 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 28/85 (32%), Positives = 48/85 (56%), Frame = +2
Query: 383 FKAVKHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMD 562
F+ +K+ PG YTFIL +KE+P++ ++ RK +G+R+P + I QA+L+ +
Sbjct: 86 FRLMKNNTPGNYTFILKGTKEVPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALG 137
Query: 563 APLICTSIKFQKEDEWMIDPVMIAD 637
P++ TS+ + DP I D
Sbjct: 138 EPMLSTSLMLPGSEFTESDPEEIKD 162
Score = 70 (24.6 bits), Expect = 9.1e-10, Sum P(2) = 9.1e-10
Identities = 12/31 (38%), Positives = 23/31 (74%), Frame = +3
Query: 195 LLKQGAVGVIPTDTMYAIVCDLRSQSAIERL 287
++++G V V PTD+ YA+ C + ++A+ER+
Sbjct: 23 IVRKGGVIVYPTDSGYALGCKIEDKNAMERI 53
>gi|12720939|gb|AAK02746.1| (AE006102) unknown [Pasteurella multocida]
Length = 207
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
Plus Strand HSPs:
Score = 130 (45.8 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 32/85 (37%), Positives = 48/85 (56%), Frame = +2
Query: 383 FKAVKHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMD 562
++ +K+ PG YTFIL A+KELP+ R TS RK +G+R+PD+ I A+L +
Sbjct: 86 YRLIKNNTPGRYTFILTATKELPR---RLMTSK-----RKTIGIRVPDNQIALALLSTLG 137
Query: 563 APLICTSIKFQKEDE-WMIDPVMIAD 637
P++ S+ E+ DP I D
Sbjct: 138 EPILSCSLMLPGEENVTQSDPEEIRD 163
Score = 62 (21.8 bits), Expect = 9.7e-10, Sum P(2) = 9.7e-10
Identities = 12/31 (38%), Positives = 21/31 (67%), Frame = +3
Query: 195 LLKQGAVGVIPTDTMYAIVCDLRSQSAIERL 287
+L+ G V V PTD+ YA+ C + + A++R+
Sbjct: 23 ILRAGGVIVYPTDSGYALGCMIGDKHAMDRI 53
>gi|7448580|pir||F64874 probable translation factor yciO - Escherichia coli
>gi|1742059|dbj|BAA14801.1| (D90764) ORF_ID:o253#4; similar to
[SwissProt Accession Number P45847] [Escherichia coli]
>gi|1742075|dbj|BAA14816.1| (D90765) ORF_ID:o253#4; similar to
[SwissProt Accession Number P45847] [Escherichia coli]
>gi|1787521|gb|AAC74349.1| (AE000224) orf, hypothetical protein
[Escherichia coli K12] >gi|12515530|gb|AAG56548.1|AE005380_7
(AE005380) orf, hypothetical protein [Escherichia coli O157:H7]
Length = 218
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | 218
0 50 100 150 200
Plus Strand HSPs:
Score = 125 (44.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 28/85 (32%), Positives = 48/85 (56%), Frame = +2
Query: 383 FKAVKHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMD 562
F+ +K+ PG YTFIL +KE+P++ ++ RK +G+R+P + I QA+L+ +
Sbjct: 98 FRLMKNNTPGNYTFILKGTKEVPRRLLQ--------EKRKTIGMRVPSNPIAQALLEALG 149
Query: 563 APLICTSIKFQKEDEWMIDPVMIAD 637
P++ TS+ + DP I D
Sbjct: 150 EPMLSTSLMLPGSEFTESDPEEIKD 174
Score = 70 (24.6 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 12/31 (38%), Positives = 23/31 (74%), Frame = +3
Query: 195 LLKQGAVGVIPTDTMYAIVCDLRSQSAIERL 287
++++G V V PTD+ YA+ C + ++A+ER+
Sbjct: 35 IVRKGGVIVYPTDSGYALGCKIEDKNAMERI 65
>gi|11279553|pir||E82233 conserved hypothetical protein VC1178 [imported] -
Vibrio cholerae (group O1 strain N16961) >gi|9655654|gb|AAF94337.1|
(AE004197) conserved hypothetical protein [Vibrio cholerae]
Length = 206
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | 206
0 50 100 150 200
Plus Strand HSPs:
Score = 122 (42.9 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 33/113 (29%), Positives = 55/113 (48%), Frame = +2
Query: 299 SILCHSFRDIDKYTAGFPRGDGQGHANLFKAVKHYLPGPYTFILIASKELPKQCIRFGTS 478
++LC ++ Y R D F+ +K+ PGPYTFI +KE+P++ +
Sbjct: 66 TLLCRDLSELSLYA----RVDNTA----FRLLKNNTPGPYTFIFKGTKEVPRRLMN---- 113
Query: 479 SAKYASRKNVGVRMPDDAICQAILKEMDAPLICTSIKFQKEDEWMIDPVMIAD 637
RK +G+R+P++ I +L+ + PL+ TS+ D DP I D
Sbjct: 114 ----EKRKTIGIRVPNNKIALDLLEALGEPLMSTSLILPGNDFTESDPEEIRD 162
Score = 69 (24.3 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 12/31 (38%), Positives = 21/31 (67%), Frame = +3
Query: 195 LLKQGAVGVIPTDTMYAIVCDLRSQSAIERL 287
+++ G V V PTD+ YA+ C L ++ +ER+
Sbjct: 23 IIRNGGVVVYPTDSGYALGCQLENKHGMERI 53
>gi|1175684|sp|P45103|YCIO_HAEIN HYPOTHETICAL PROTEIN HI1198
>gi|1074679|pir||I64168 probable translation factor HI1198 -
Haemophilus influenzae (strain Rd KW20) >gi|1574127|gb|AAC22852.1|
(U32799) conserved hypothetical protein [Haemophilus influenzae Rd]
Length = 207
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): ____________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
__________________
Annotated Domains:
BLOCKS BL01147A: SUA5/yciO/yrdC family proteins 29..53
BLOCKS BL01147B: SUA5/yciO/yrdC family proteins 88..101
BLOCKS BL01147C: SUA5/yciO/yrdC family proteins 112..124
BLOCKS BL01147D: SUA5/yciO/yrdC family proteins 182..199
DOMO DM07922: HYPOTHETICALSUA5/YCIO/YRDCFAMIL 1..206
PFAM Sua5_yciO_yrdC: SUA5/yciO/yrdC family 22..199
PRODOM PD002209: HYPF(6) YD01(2) YCIO(2) 19..198
PROSITE SUA5: SUA5/yciO/yrdC family signature. 29..41
__________________
Plus Strand HSPs:
Score = 124 (43.7 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 31/85 (36%), Positives = 47/85 (55%), Frame = +2
Query: 383 FKAVKHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMD 562
++ +K+ PG YTFIL A+KELP+ R TS RK +G+R+PD+ I +L +
Sbjct: 86 YRLIKNNTPGRYTFILTATKELPR---RLMTSK-----RKTIGLRVPDNKIALDLLSALG 137
Query: 563 APLICTSIKFQKEDEW-MIDPVMIAD 637
P++ S+ E+ DP I D
Sbjct: 138 EPILSCSLMLPNEEHTTQSDPEEIRD 163
Score = 63 (22.2 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 12/31 (38%), Positives = 22/31 (70%), Frame = +3
Query: 195 LLKQGAVGVIPTDTMYAIVCDLRSQSAIERL 287
+L++G V V PTD+ YA+ C + + A++R+
Sbjct: 23 ILQKGGVIVYPTDSGYALGCMMGDKHAMDRI 53
>gi|12723495|gb|AAK04698.1|AE006293_4 (AE006293) conserved hypothetical protein
[Lactococcus lactis subsp. lactis]
Length = 270
Frame 3 hits (HSPs): _______
Frame 2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | 270
0 50 100 150 200 250
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 35/88 (39%), Positives = 48/88 (54%), Frame = +2
Query: 296 LSILCHSFRDIDKYTAGFPRGDGQGHANLFKAVKHYLPGPYTFILIASKELPKQCIRFGT 475
L++ SF DI KY+ P L K V+ +LPGP T IL ASK++P + I G
Sbjct: 121 LNMNISSFEDILKYSINQP-------VYLQKIVEAFLPGPLTIILEASKDVP-EWIHIGK 172
Query: 476 SSAKYASRKNVGVRMPDDAICQAILKEM 559
S+ VG RMP+ A+ Q I+KE+
Sbjct: 173 ST--------VGFRMPNIAVTQKIIKEV 192
Score = 73 (25.7 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 11/33 (33%), Positives = 23/33 (69%), Frame = +3
Query: 198 LKQGAVGVIPTDTMYAIVCDLRSQSAIERLRSL 296
LK G + ++PT+T+Y + D ++ A+++L S+
Sbjct: 80 LKSGQLAILPTETVYGLFADAMNEEAVQKLYSV 112
>gi|7445338|pir||E70357 conserved hypothetical protein aq_651 - Aquifex
aeolicus >gi|2983259|gb|AAC06854.1| (AE000700) hypothetical protein
[Aquifex aeolicus]
Length = 198
Frame 3 hits (HSPs): __________________________
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 198
0 50 100 150
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.0011, Sum P(2) = 0.0011
Identities = 26/103 (25%), Positives = 46/103 (44%), Frame = +3
Query: 177 LEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERLRSLLASCATHFGT*TSTQLDFHV 356
L+ +LK+G + V PTDT+Y I+ D ++ A++RL + F +
Sbjct: 10 LKEAVEILKKGGIIVAPTDTLYGILADATNEEAVKRLYKIRRPSGKPFLVLLPDESWLEK 69
Query: 357 VMVKAMQIYSKLLSITYLVLTHSS*LQAKNYLSNA*GLELHLP 485
+ + + + KLL + L L +Y+S L + LP
Sbjct: 70 LCLDVKEEHKKLLKVEGLTLVFRKTCDKLDYVSKG-TLAVRLP 111
Score = 55 (19.4 bits), Expect = 0.0011, Sum P(2) = 0.0011
Identities = 9/33 (27%), Positives = 18/33 (54%), Frame = +2
Query: 488 YASRKNVGVRMPDDAICQAILKEMDAPLICTSI 586
Y S+ + VR+P + +L E+ P++ S+
Sbjct: 100 YVSKGTLAVRLPQKGFIRDLLSELKKPVVAPSV 132
>gi|7429865|pir||C69093 conserved hypothetical protein MTH1692 -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622823|gb|AAB86164.1| (AE000927) conserved protein
[Methanothermobacter thermautotrophicus]
Length = 208
Frame 3 hits (HSPs): __________
Frame 2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 208
0 50 100 150 200
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 0.0047, Sum P(2) = 0.0047
Identities = 23/64 (35%), Positives = 34/64 (53%), Frame = +2
Query: 392 VKHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMDAPL 571
++ LPGPYT +L ++ +P I G+S VG+R+PDD IC+ I P+
Sbjct: 88 MERILPGPYTVVLERNELIP-DVITGGSS--------RVGIRVPDDEICRRIAARF--PV 136
Query: 572 ICTS 583
TS
Sbjct: 137 TATS 140
Score = 62 (21.8 bits), Expect = 0.0047, Sum P(2) = 0.0047
Identities = 11/37 (29%), Positives = 22/37 (59%), Frame = +3
Query: 177 LEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERL 287
LE ++++ G + + PTDT+Y + + + A+ RL
Sbjct: 16 LEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRL 52
>gi|6015811|emb|CAB57638.1| (Y18930) hypothetical protein [Sulfolobus
solfataricus] >gi|12312215|emb|CAC23078.1| (AL512964) ORF-c09_003
[Sulfolobus solfataricus]
Length = 358
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 358
0 150 300
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 0.018, Sum P(2) = 0.018
Identities = 24/80 (30%), Positives = 38/80 (47%), Frame = +2
Query: 407 PGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMDAPLICTSI 586
PGP TF+L ++++PK+ T+ + V VRMP + A++ E P+ S
Sbjct: 95 PGPLTFVLKKTEKVPKE-----TTGGL----ETVAVRMPAHPVALALINESGVPIAAPSA 145
Query: 587 KFQ-KEDEWMIDPVMIADTYG 646
K ++ V I D YG
Sbjct: 146 NLATKPSPTRVEHV-IDDIYG 165
Score = 72 (25.3 bits), Expect = 0.018, Sum P(2) = 0.018
Identities = 13/49 (26%), Positives = 28/49 (57%), Frame = +3
Query: 141 IEADPSASDSWKLEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERL 287
++ DP + K++ AN++K G V PT+T+Y + + A++++
Sbjct: 5 LKVDPLYPELDKIKKAANVIKAGGTVVFPTETVYGLGANALDPEAVKKI 53
>gi|10581723|gb|AAG20422.1| (AE005114) Vng2312c [Halobacterium sp. NRC-1]
Length = 198
Frame 3 hits (HSPs): __________
Frame 2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 198
0 50 100 150
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.074, Sum P(2) = 0.072
Identities = 22/67 (32%), Positives = 31/67 (46%), Frame = +2
Query: 401 YLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMDAPLICT 580
+LPGP T + +P + G R VGVR+PD + A+L+ + APL T
Sbjct: 82 FLPGPVTVVCEKRDSVPD--VLTG-------GRDRVGVRVPDSEVAVALLERV-APLTAT 131
Query: 581 SIKFQKE 601
S E
Sbjct: 132 SANVSGE 138
Score = 64 (22.5 bits), Expect = 0.074, Sum P(2) = 0.072
Identities = 13/35 (37%), Positives = 19/35 (54%), Frame = +3
Query: 177 LEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIE 281
L A L++G + V PT+T+Y + D AIE
Sbjct: 7 LAEAAEALREGGLVVFPTETVYGLAADALDPDAIE 41
>gi|7445336|pir||E72324 conserved hypothetical protein - Thermotoga maritima
(strain MSB8) >gi|4981386|gb|AAD35934.1|AE001752_1 (AE001752)
conserved hypothetical protein [Thermotoga maritima]
Length = 335
Frame 3 hits (HSPs): _________
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 335
0 150 300
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 0.21, Sum P(2) = 0.19
Identities = 17/52 (32%), Positives = 29/52 (55%), Frame = +3
Query: 141 IEADPSASDSWKLEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERLRSL 296
++ DP D L+ A LL+ G V + PT+T+Y I D ++ A +++ L
Sbjct: 5 LKVDPLFPDEKVLKEAAELLRNGEVIIFPTETVYGIGADAYNEEACKKIFKL 56
Score = 55 (19.4 bits), Expect = 0.21, Sum P(2) = 0.19
Identities = 22/97 (22%), Positives = 38/97 (39%), Frame = +2
Query: 293 PLSILCHSFRDIDKYTAGFPRGDGQGHANLFKAVKHYLPGPYTFILIASKELPKQCIRFG 472
PL + HSF+ +++ G+ + H + +K + PGP T I E +
Sbjct: 64 PLIVHIHSFKQLEEIAEGY-----EPHLDF---LKKFWPGPLTVIFRKKSEKIPPVVT-- 113
Query: 473 TSSAKYASRKNVGVRMPDDAICQAILKEMDAPLICTS 583
A V VRMP + +++ P+ S
Sbjct: 114 ------ADLPTVAVRMPAHPVALKLIELFGHPIAAPS 144
>gi|11278779|pir||G82243 conserved hypothetical protein VC1079 [imported] -
Vibrio cholerae (group O1 strain N16961) >gi|9655547|gb|AAF94238.1|
(AE004189) conserved hypothetical protein [Vibrio cholerae]
Length = 329
Frame 3 hits (HSPs): _________
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 329
0 150 300
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 1.2, Sum P(2) = 0.69
Identities = 19/54 (35%), Positives = 28/54 (51%), Frame = +3
Query: 156 SASDSWKLEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERLRSLLASCATH 317
SA +E A LLKQG + IPT+T+Y + D A++++ S A H
Sbjct: 15 SAMTPADIECAAQLLKQGQLVAIPTETVYGLAADATQPEAVKQIFSAKGRPANH 68
Score = 45 (15.8 bits), Expect = 1.2, Sum P(2) = 0.69
Identities = 15/57 (26%), Positives = 27/57 (47%), Frame = +2
Query: 383 FKAVKHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILK 553
++ + + PGP T +L +K++ + G S VG+R+P + ILK
Sbjct: 92 YQLAEAFWPGPLTLLLPKAKQV-SPVVTGGLES--------VGIRVPAHPVLLDILK 139
>gi|11497366 ref|NP_051465.1| conserved hypothetical protein [Borrelia
burgdorferi] >gi|11497448 ref|NP_051542.1| conserved hypothetical
protein [Borrelia burgdorferi] >gi|6382387|gb|AAF07698.1|AE001582_6
(AE001582) conserved hypothetical protein [Borrelia burgdorferi]
>gi|6435847|gb|AAF08548.1|AE001583_3 (AE001583) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 330
Frame 3 hits (HSPs): _______
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 330
0 150 300
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 2.5, Sum P(2) = 0.92
Identities = 14/43 (32%), Positives = 25/43 (58%), Frame = +3
Query: 159 ASDSWKLEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERL 287
+ D +K+ L+K G + V PTDT+YAI ++ + A+ +
Sbjct: 8 SEDQFKIA--LKLIKMGEIIVFPTDTVYAIGANIYDEYAVRMI 48
Score = 60 (21.1 bits), Expect = 2.5, Sum P(2) = 0.92
Identities = 16/69 (23%), Positives = 35/69 (50%), Frame = +2
Query: 392 VKHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMDAPL 571
++ + PGP T++L S ++PK F ++ V +R+P + +++++ PL
Sbjct: 85 MEKFSPGPLTYVLKKSIKIPK----FINNNLD-----TVAIRIPKNKTALNLIRKLKNPL 135
Query: 572 ICTSIKFQK 598
+ +S K
Sbjct: 136 VVSSANLSK 144
>gi|7445335|pir||F75007 sua5 related protein PAB1302 - Pyrococcus abyssi
(strain Orsay) >gi|5459014|emb|CAB50500.1| (AJ248288) SUA5 RELATED
PROTEIN [Pyrococcus abyssi]
Length = 340
Frame 3 hits (HSPs): _______
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 340
0 150 300
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 2.9, Sum P(2) = 0.95
Identities = 10/41 (24%), Positives = 25/41 (60%), Frame = +3
Query: 165 DSWKLEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERL 287
+ WK+ A +++G + PT+T+Y + + ++A++R+
Sbjct: 12 EEWKIRIAAGFIREGKLVAFPTETVYGLGANALDENAVKRI 52
Score = 54 (19.0 bits), Expect = 2.9, Sum P(2) = 0.95
Identities = 18/63 (28%), Positives = 29/63 (46%), Frame = +2
Query: 395 KHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMDAPLI 574
K + PGP T +L S+ +P+ I G + V VRMP I +++ + P+
Sbjct: 90 KRFWPGPLTLVLPKSEVVPR-VITGGLDT--------VAVRMPAHEIALKLIELSERPIA 140
Query: 575 CTS 583
S
Sbjct: 141 APS 143
>gi|11278780|pir||T44498 hypothetical protein [imported] - Thermomonospora
fusca >gi|5107073|gb|AAD39949.1|AF144563_3 (AF144563) unknown
[Thermobifida fusca]
Length = 335
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 335
0 150 300
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 5.8, Sum P(2) = 1.0
Identities = 18/61 (29%), Positives = 27/61 (44%), Frame = +2
Query: 401 YLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMDAPLICT 580
+ PGP T IL S ++P A R VG+R+PD + A+L+ +
Sbjct: 96 FWPGPLTLILPRSAQVP---------DAVTGGRATVGLRVPDQPVALALLERFGGGIAAP 146
Query: 581 S 583
S
Sbjct: 147 S 147
Score = 60 (21.1 bits), Expect = 5.8, Sum P(2) = 1.0
Identities = 12/47 (25%), Positives = 24/47 (51%), Frame = +3
Query: 177 LEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERLRSLLASCATH 317
L+ +L+ G + PT+T+Y + D + +A+ R+ + A H
Sbjct: 20 LDEAVRVLRAGGLVAFPTETVYGLGADAANPAAVARIFAAKGRPADH 66
>gi|7429863|pir||E70191 conserved hypothetical protein BB0734 - Lyme disease
spirochete >gi|2688669|gb|AAC67081.1| (AE001173) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 337
Frame 3 hits (HSPs): ______
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 337
0 150 300
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 7.2, Sum P(2) = 1.0
Identities = 12/40 (30%), Positives = 25/40 (62%), Frame = +3
Query: 168 SWKLEPIANLLKQGAVGVIPTDTMYAIVCDLRSQSAIERL 287
S +++ A L+K G + V PT+T+Y I + ++ A++ +
Sbjct: 9 SSQIQKAAKLIKMGELVVFPTETVYGIGANAYNEDAVKMI 48
Score = 58 (20.4 bits), Expect = 7.2, Sum P(2) = 1.0
Identities = 16/69 (23%), Positives = 32/69 (46%), Frame = +2
Query: 392 VKHYLPGPYTFILIASKELPKQCIRFGTSSAKYASRKNVGVRMPDDAICQAILKEMDAPL 571
+K + PGP T++L S ++ RF + + V +R+P + +++K P+
Sbjct: 85 IKKFSPGPLTYVLKKSIKIS----RFVSGNLD-----TVAIRIPANKTALSLIKASKVPI 135
Query: 572 ICTSIKFQK 598
+ S K
Sbjct: 136 VAPSANISK 144
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.96
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.345 0.148 0.471
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.343 0.152 0.541
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.358 0.157 0.640
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.347 0.152 0.561
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.345 0.150 0.537
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.353 0.155 0.544
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 221 218 10. 77 3 12 22 0.10 35
32 0.12 38
+2 0 221 220 10. 77 3 12 22 0.10 35
32 0.12 38
+1 0 222 218 10. 77 3 12 22 0.10 35
32 0.12 38
-1 0 222 220 10. 77 3 12 22 0.10 35
32 0.12 38
-2 0 221 218 10. 77 3 12 22 0.10 35
32 0.12 38
-3 0 221 218 10. 77 3 12 22 0.10 35
32 0.12 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 25
No. of states in DFA: 594 (59 KB)
Total size of DFA: 257 KB (320 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 222.02u 1.07s 223.09t Elapsed: 00:00:38
Total cpu time: 222.08u 1.09s 223.17t Elapsed: 00:00:38
Start: Wed Jan 23 14:30:58 2002 End: Wed Jan 23 14:31:36 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000