Supplementary Figure 5 to the paper by K.S. Makarova, E.V. Koonin, R. Haselkorn and M.Y. Galperin
"Cyanobacterial response regulator PatA contains a conserved N-terminal domain (PATAN)
with an alpha-helical insertion
", published in Bioinformatics, 22:1297-1301 (2006).
Abstract. PubMed. Full text (PDF).

FRGAF:

FrgA_Myxxa 6578849 Q9RF11_MYXXA  376  ARAALKEATKDRDRLIDVALRFGRRTFDYVASFAVLR---GGATGLEARGEGMAGEQL----TQVSIPLDASSVFR  444

GSU0231   39982103 Q74GL5_GEOSL  421  KTLMELRALREPPEIALTLLSTVAGTFERALTLIVRE---EELIAERSIGIRSPRGACVSPSFGTRIPLDRPSVLR  493

GSU0314   39982186 Q74GD2_GEOSL  211  ALSRTLADCRERDAVADALVDYAGRLFGCAGLLLVMR---DMAAGW--EAVAGHERLREF--GQLRISLQEASHVR  279

GSU2224   39984213 Q74AX5_GEOSL  395  GMLEELSNPALGGGVTLMVLRFAAEFMNRAIIFMVRR---DEIVGLGQFGIEETGGVADARVRRLRIPRNGESLFS  467

Gmet_0111 78192593 Q39ZG4_GEOMG  214  TLSRELVDAPDRDAVARAILNYVGQEFGRAALLLVTR---DAVAGW--MALDGGNPVPRF--DELRIGLDEPSVML  282

Gmet_0261 78192739 Q39Z18_GEOMG  418  TSVAALRGLGEPPEIALSLLQSVAGELDRALTLIVRD---TELIAERSIGIRGDRQDGASPPLRFTIPLAQPSLFT  490

Gmet_2313 78194771 Q39T86_GEOMG  232  GMLEELHNPELGCGITLLVLRLAAEFMDRAVIFRVLK---EEVVGLGQFGLDDRGGGADERIRSLRIPRGEPSLFS  304

Pcar_1407 77545091 Q3A4Q4_PELCD  371  GMLEELNNPALGGGIILLVLRFASEVMNRAVIFSVKE---DNIVGLGQFGVTLQEGETDEAIRNIVIPRDGDSILS  443

Pcar_3077 77546750 Q39ZZ5_PELCD  195  ELSEKLAAARCRDDVADTLIDHLSGQFDRMGLFLLKN---GELRGW--RALVGHRLHPEF--HNVKITVTGSNLLH  263

Adeh_0249 86156677 ABC80025      310  EAQAALAAASERDEVLRVVLRYAREFFAFAAVFAVSR---DAVAGHDALGEEEGEDARALC-RSVAIYTSDPGVFH  381
Bd1937    42523415 Q6MLR9_BDEBA  393  LEKIKKKNAALLNEKIKTILSQMKVHFEKSMILTLDE-4-MTAFAWDENFQGMKD-------TSMRFPLQTPSIFN  461

EAO36114  71838673 Q3G1J3_9DELT  212  RTSGKLARAGSTDEVGDLLIEHMGQLFGTGALFQMRG---TGAVGW--RGVSNGRRIDLI--ETDDLVLHESSVVR  280

EAO36351  71838292 Q3G2N4_9DELT  425  DCICELDSQRSLPEMAFVVLTFASAMFERTLTLVVRE---NQLIAEKGFGIRGDKSSGATEAMLFNVPLGEPSVFQ  497

EAO37543  71837210 Q3G5L8_9DELT  372  GMLEELKNADTQGGVALLLLRFAAEFVNRAVVFAVHD---MIVSGVGQFGICEGAITGDERVRAINFPLGWDSMFR  444

EAO38091  71836729 Q3G721_9DELT  426  SCISRLRDCRTRTEIADALLAYLMEPFERGIVFLVTE---TELVAEHSFGVGEGKGEGLKPLSTLCIARDDQEIFE  498

GAF:

NORR_ECOLI 29428733 P37013        14  ELQRGIGHQDRFQRLITTLRQVLE--CDASALLRYDS---RQFIPLAIDGLAKDV-------LGRRFA-----LEG   72

FHLA_ECOLI  120053  P19323       196  AVLSRLDMDELVSEVAKEIHYYFD--IDDISIVLRSH-5-NIYSTHYLDKQHPAH-------EQSEVD-----EAG  259

PDE6B_BOVIN 116579  P23439        65  DMQENVNMERVVFKILRRLCSILH--ADRCSLFMYRQ-4-AELATRLFSVQPDSVLED-5-DSEIVFP-----LDI  136

PDB: 1MC0  24159053 Q922S4       190  LFTHLDDVSVLLQEIITEARNLSN--AEICSVFLLDQ---NELVAKVFDGGVVDDES-----YEIRIP-----ADQ  250

                                      .........HHHHHHHHHHHHHH....EEEEEEEEEE   EEEE....................EEEE........     

 
 

FRGAF:

FrgA_Myxxa  445  TVAVTRGSYAGPLPPDAL---TRHYLELFGRQT--PRTVFLYPVEVK-GRLVAILYGDCGQRPI--SQRRLSDYILFCQDLPAAFQELILFRKQRVS  533
GSU0314     280  TVVEERSVYLGPPGNMPT---DRRLAEALGGAG--APGLMLVPMVMG-RRVVTILCAAGEMVA---LGARLSEAQTIARKGVLAFEILILRGKILMT  367
GSU0231     494  DAIEKRAAFYGETDDEIL---KGHLFPIIGAPL--HPTVILLPLVCG-GKVIALIYGDFGHKGA--APVRTELLELVTGEAGLVLETALYRRKRERK  582
GSU2224     468  AIIEAKHPAVVRPEPAAW---NRYLFEHLGPEI--PDEVFVGPIVSE-GRVVAILYGDNLPDKK--PIGGTEALEIFLSQAGVAMEKALLERKLLES  556
Gmet_0111   283  SVTKARVLYHGPVAGTPA---NLRLLKALGGDK--PEGMILVPLVMN-KRVVAILCAVGGVEL---LGARQESLQVVARKGVLAFEVLILKNKILMT  370
Gmet_0261   491  KVIEKRGAFFGKTDDEIV---RGHLFAAIGAPL--NPTVFLLPLESF-GKTVSLIYGDFGQGEP--APVPVDFLEILAGEAGIVLENAVYRRKREKP  579
Gmet_2313   305  GVIEAKHPAVVRPEANEW---NRYLFGRIGVEI--PHEVFLGPIVSG-GEVIAVLYGDNQAERR--PIVGTEALEIFLSQAGLVMEKALLESKLRSV  393
Pcar_1407   444  RLLGNPRPVRTRFGDGRE---DESLCVALGGEV--PKEVFLGPIFSE-GRVVAILYGDNLPDHT--SVGNTEALEIFLSQAGMAMEKALLEGRLLGS  532
Pcar_3077   264  AVLSEQNPFLGRVPEPRL---LKQLVNALGAS---CEKAIMLPLILA-GRSVGMLFAEEAGQT---GSERVTELQNLLAKTACALEILILRNKLTRP  350
Adeh_0249   382  TAIETHAPHLGPISPEPD--GNRAILDGLGRGT--PRTVLVHPVVLR-QRTACLLYADNGPAAV--SPRRLADLVLFLAGLAPALERVIQARKRARG  463
Bd1937      462  IVATTQKPYHGYISLNAI---NEKFFDGWNQGRI-PDHVTVTPIIIN-EKLVGMLMGFAEK-------AAYNKVSLTLAEKLSGEFTKGLQAA----  543
EAO36114    281  DVAEGRRYSLGPLMDTPE---NRRILQLLELPG--DASLFVLPVVLG-NRAVAVLLVSVEMDD---PMACLAELRTLAHEAERALAMLIIRKKGMSQ  368
EAO36351    498  DVLKSGRYFYGQCNDAVL---STHLHARIGTPH--SPKMMLMPIKAL-GRVIALIYGDFGDMAG--SPLQIDLLDIAARHAGLLLDNSLYRKRYLAS  586
EAO37543    445  EAGKSGRSGIFTPAMTPL---DCQILKQLGGDT--PAEVFIGPIMGS-SGLIGFLYGDNLPDGG--PLSGTETLAMFLALAGSAMERGLQPSRGRA-  532
EAO38091    499  DMVKTGTMYYGFHSDSTW---PHQLYRLIGRPD--SPEVLLFPLVRA-NRVVAFIYADFGSRPA--TAPTLACIEALVQYSTAQVSISAYRQKLKAM  587

GAF:

NORR_ECOLI   74  PRLEAIARAGDVVRFPAD-5-PYDGLIPGQESLK-VHACVGLPLFAG-QNLIGALTLDGM-QPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQ  169

FHLA_ECOLI  260  TLTERVFKSKEMLLINLH-5-APYERMLFDTW3--IQTLCLLPLMSG-DTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL  356

PDE6B_BOVIN 137  GVVGHVAQTKKMVNVQDV-6-SSFADELTDYV---TRNILATPIMNG-KDVVAVIMAVNKLDGPCFTSEDEDVFLKYLNFGTLNLKIYHLSYLHNCE  232

PDB: 1MC0   251  GIAGHVATTGQILNIPDA-6-YRGVDDSTGFR---TRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAHSLLYKKVNEA  347

                 .HHHHHHHH..EEEEEEE....HHHHHHH.......EEEEEEEEEE...EEEEEEEEEE........HHHHHHHHHHHHHHHHHHHHHHHHHHH...