Supplementary Figure 5 to the paper by K.S. Makarova, E.V. Koonin, R. Haselkorn and M.Y. Galperin
"Cyanobacterial response regulator PatA contains a conserved N-terminal domain (PATAN)
with an alpha-helical insertion", published in Bioinformatics, 22:1297-1301 (2006).
Abstract.
PubMed.
Full text (PDF).
FRGAF:
FrgA_Myxxa 6578849 Q9RF11_MYXXA 376 ARAALKEATKDRDRLIDVALRFGRRTFDYVASFAVLR---GGATGLEARGEGMAGEQL----TQVSIPLDASSVFR 444
GSU0231 39982103 Q74GL5_GEOSL 421 KTLMELRALREPPEIALTLLSTVAGTFERALTLIVRE---EELIAERSIGIRSPRGACVSPSFGTRIPLDRPSVLR 493
GSU0314 39982186 Q74GD2_GEOSL 211 ALSRTLADCRERDAVADALVDYAGRLFGCAGLLLVMR---DMAAGW--EAVAGHERLREF--GQLRISLQEASHVR 279
GSU2224 39984213 Q74AX5_GEOSL 395 GMLEELSNPALGGGVTLMVLRFAAEFMNRAIIFMVRR---DEIVGLGQFGIEETGGVADARVRRLRIPRNGESLFS 467
Gmet_0111 78192593 Q39ZG4_GEOMG 214 TLSRELVDAPDRDAVARAILNYVGQEFGRAALLLVTR---DAVAGW--MALDGGNPVPRF--DELRIGLDEPSVML 282
Gmet_0261 78192739 Q39Z18_GEOMG 418 TSVAALRGLGEPPEIALSLLQSVAGELDRALTLIVRD---TELIAERSIGIRGDRQDGASPPLRFTIPLAQPSLFT 490
Gmet_2313 78194771 Q39T86_GEOMG 232 GMLEELHNPELGCGITLLVLRLAAEFMDRAVIFRVLK---EEVVGLGQFGLDDRGGGADERIRSLRIPRGEPSLFS 304
Pcar_1407 77545091 Q3A4Q4_PELCD 371 GMLEELNNPALGGGIILLVLRFASEVMNRAVIFSVKE---DNIVGLGQFGVTLQEGETDEAIRNIVIPRDGDSILS 443
Pcar_3077 77546750 Q39ZZ5_PELCD 195 ELSEKLAAARCRDDVADTLIDHLSGQFDRMGLFLLKN---GELRGW--RALVGHRLHPEF--HNVKITVTGSNLLH 263
Adeh_0249 86156677 ABC80025 310 EAQAALAAASERDEVLRVVLRYAREFFAFAAVFAVSR---DAVAGHDALGEEEGEDARALC-RSVAIYTSDPGVFH 381
Bd1937 42523415 Q6MLR9_BDEBA 393 LEKIKKKNAALLNEKIKTILSQMKVHFEKSMILTLDE-4-MTAFAWDENFQGMKD-------TSMRFPLQTPSIFN 461
EAO36114 71838673 Q3G1J3_9DELT 212 RTSGKLARAGSTDEVGDLLIEHMGQLFGTGALFQMRG---TGAVGW--RGVSNGRRIDLI--ETDDLVLHESSVVR 280
EAO36351 71838292 Q3G2N4_9DELT 425 DCICELDSQRSLPEMAFVVLTFASAMFERTLTLVVRE---NQLIAEKGFGIRGDKSSGATEAMLFNVPLGEPSVFQ 497
EAO37543 71837210 Q3G5L8_9DELT 372 GMLEELKNADTQGGVALLLLRFAAEFVNRAVVFAVHD---MIVSGVGQFGICEGAITGDERVRAINFPLGWDSMFR 444
EAO38091 71836729 Q3G721_9DELT 426 SCISRLRDCRTRTEIADALLAYLMEPFERGIVFLVTE---TELVAEHSFGVGEGKGEGLKPLSTLCIARDDQEIFE 498
GAF:
NORR_ECOLI 29428733 P37013 14 ELQRGIGHQDRFQRLITTLRQVLE--CDASALLRYDS---RQFIPLAIDGLAKDV-------LGRRFA-----LEG 72
FHLA_ECOLI 120053 P19323 196 AVLSRLDMDELVSEVAKEIHYYFD--IDDISIVLRSH-5-NIYSTHYLDKQHPAH-------EQSEVD-----EAG 259
PDE6B_BOVIN 116579 P23439 65 DMQENVNMERVVFKILRRLCSILH--ADRCSLFMYRQ-4-AELATRLFSVQPDSVLED-5-DSEIVFP-----LDI 136
PDB: 1MC0 24159053 Q922S4 190 LFTHLDDVSVLLQEIITEARNLSN--AEICSVFLLDQ---NELVAKVFDGGVVDDES-----YEIRIP-----ADQ 250
.........HHHHHHHHHHHHHH....EEEEEEEEEE EEEE....................EEEE........
FRGAF:
FrgA_Myxxa 445 TVAVTRGSYAGPLPPDAL---TRHYLELFGRQT--PRTVFLYPVEVK-GRLVAILYGDCGQRPI--SQRRLSDYILFCQDLPAAFQELILFRKQRVS 533
GSU0314 280 TVVEERSVYLGPPGNMPT---DRRLAEALGGAG--APGLMLVPMVMG-RRVVTILCAAGEMVA---LGARLSEAQTIARKGVLAFEILILRGKILMT 367
GSU0231 494 DAIEKRAAFYGETDDEIL---KGHLFPIIGAPL--HPTVILLPLVCG-GKVIALIYGDFGHKGA--APVRTELLELVTGEAGLVLETALYRRKRERK 582
GSU2224 468 AIIEAKHPAVVRPEPAAW---NRYLFEHLGPEI--PDEVFVGPIVSE-GRVVAILYGDNLPDKK--PIGGTEALEIFLSQAGVAMEKALLERKLLES 556
Gmet_0111 283 SVTKARVLYHGPVAGTPA---NLRLLKALGGDK--PEGMILVPLVMN-KRVVAILCAVGGVEL---LGARQESLQVVARKGVLAFEVLILKNKILMT 370
Gmet_0261 491 KVIEKRGAFFGKTDDEIV---RGHLFAAIGAPL--NPTVFLLPLESF-GKTVSLIYGDFGQGEP--APVPVDFLEILAGEAGIVLENAVYRRKREKP 579
Gmet_2313 305 GVIEAKHPAVVRPEANEW---NRYLFGRIGVEI--PHEVFLGPIVSG-GEVIAVLYGDNQAERR--PIVGTEALEIFLSQAGLVMEKALLESKLRSV 393
Pcar_1407 444 RLLGNPRPVRTRFGDGRE---DESLCVALGGEV--PKEVFLGPIFSE-GRVVAILYGDNLPDHT--SVGNTEALEIFLSQAGMAMEKALLEGRLLGS 532
Pcar_3077 264 AVLSEQNPFLGRVPEPRL---LKQLVNALGAS---CEKAIMLPLILA-GRSVGMLFAEEAGQT---GSERVTELQNLLAKTACALEILILRNKLTRP 350
Adeh_0249 382 TAIETHAPHLGPISPEPD--GNRAILDGLGRGT--PRTVLVHPVVLR-QRTACLLYADNGPAAV--SPRRLADLVLFLAGLAPALERVIQARKRARG 463
Bd1937 462 IVATTQKPYHGYISLNAI---NEKFFDGWNQGRI-PDHVTVTPIIIN-EKLVGMLMGFAEK-------AAYNKVSLTLAEKLSGEFTKGLQAA---- 543
EAO36114 281 DVAEGRRYSLGPLMDTPE---NRRILQLLELPG--DASLFVLPVVLG-NRAVAVLLVSVEMDD---PMACLAELRTLAHEAERALAMLIIRKKGMSQ 368
EAO36351 498 DVLKSGRYFYGQCNDAVL---STHLHARIGTPH--SPKMMLMPIKAL-GRVIALIYGDFGDMAG--SPLQIDLLDIAARHAGLLLDNSLYRKRYLAS 586
EAO37543 445 EAGKSGRSGIFTPAMTPL---DCQILKQLGGDT--PAEVFIGPIMGS-SGLIGFLYGDNLPDGG--PLSGTETLAMFLALAGSAMERGLQPSRGRA- 532
EAO38091 499 DMVKTGTMYYGFHSDSTW---PHQLYRLIGRPD--SPEVLLFPLVRA-NRVVAFIYADFGSRPA--TAPTLACIEALVQYSTAQVSISAYRQKLKAM 587
GAF:
NORR_ECOLI 74 PRLEAIARAGDVVRFPAD-5-PYDGLIPGQESLK-VHACVGLPLFAG-QNLIGALTLDGM-QPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQ 169
FHLA_ECOLI 260 TLTERVFKSKEMLLINLH-5-APYERMLFDTW3--IQTLCLLPLMSG-DTMLGVLKLAQC-EEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRL 356
PDE6B_BOVIN 137 GVVGHVAQTKKMVNVQDV-6-SSFADELTDYV---TRNILATPIMNG-KDVVAVIMAVNKLDGPCFTSEDEDVFLKYLNFGTLNLKIYHLSYLHNCE 232
PDB: 1MC0 251 GIAGHVATTGQILNIPDA-6-YRGVDDSTGFR---TRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAHSLLYKKVNEA 347
.HHHHHHHH..EEEEEEE....HHHHHHH.......EEEEEEEEEE...EEEEEEEEEE........HHHHHHHHHHHHHHHHHHHHHHHHHHH...