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Library:881 (dbEST ID)
NCI_CGAP_Alv1
Library Description
| Organism: | Homo sapiens |
| Tissue: | alveolar rhabdomyosarcoma |
| Vector: | pAMP10 |
| Vector type: | plasmid (ampicillin resistant) |
| Lab host: | DH10B |
mRNA made from alveolar rhabdomyosarcoma, cDNA made by oligo-dT priming. Non-directionally cloned. Size-selected on agarose gel, average insert size 600 bp. Reference: Krizman et al. (1996) Cancer Research 56:5380-5383.
Source: Robert Strausberg, Ph.D.
Gene Content Analysis
3,602 ESTs from this library were grouped into 1,793 UniGene entries (putative genes) [UniGene build #218, 05-Jan-2009]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).
| ESTs | TPM | UniGene Entry | ||
|---|---|---|---|---|
| 1 | 278 |  |
Hs.707281 | Hypothetical protein LOC284889. |
| 1 | 278 | |
Hs.707250 | Transcribed locus. |
| 1 | 278 | |
Hs.707223 | Transcribed locus, strongly similar to NP_033106.1 ribosomal protein L26 [Mus musculus]. |
| 1 | 278 | |
Hs.707165 | Transcribed locus, moderately similar to NP_387506.1 death-associated protein 3 [Homo sapiens]. |
| 1 | 278 | |
Hs.707090 | Transcribed locus, moderately similar to NP_000959.2 ribosomal protein L4 [Homo sapiens]. |
| 1 | 278 | |
Hs.706939 | Transcribed locus. |
| 1 | 278 | |
Hs.706890 | Tyrosyl-tRNA synthetase. |
| 1 | 278 | |
Hs.706888 | Transcribed locus. |
| 1 | 278 | |
Hs.706813 | Chromosome 21 open reading frame 66. |
| 1 | 278 | |
Hs.706676 | 5-azacytidine induced 2. |
| 1 | 278 | |
Hs.706617 | Calponin 3, acidic. |
| 1 | 278 | |
Hs.705990 | Transcribed locus. |
| 1 | 278 | |
Hs.705892 | Transcribed locus. |
| 1 | 278 | |
Hs.705267 | Transcribed locus. |
| 1 | 278 | |
Hs.704007 | Reticulon 4. |
| 1 | 278 | |
Hs.7037 | Pallidin homolog (mouse). |
| 1 | 278 | |
Hs.703496 | Transcribed locus. |
| 1 | 278 | |
Hs.702902 | Transcribed locus, weakly similar to NP_182049.1 MAP1A (METHIONINE AMINOPEPTIDASE 1A); methionyl aminopeptidase [Arabidopsis thaliana]. |
| 1 | 278 | |
Hs.702563 | Transcribed locus. |
| 1 | 278 | |
Hs.702316 | Family with sequence similarity 174, member B. |
| 1 | 278 | |
Hs.702173 | Transcribed locus, strongly similar to NP_035995.1 poly(rC) binding protein 1 [Mus musculus]. |
| 1 | 278 | |
Hs.702075 | Transcribed locus. |
| 1 | 278 | |
Hs.702056 | Glucosamine-phosphate N-acetyltransferase 1. |
| 1 | 278 | |
Hs.702041 | CDNA clone IMAGE:4181418. |
| 1 | 278 | |
Hs.701361 | Transcribed locus. |
| 1 | 278 | |
Hs.701265 | Transcribed locus. |
| 1 | 278 | |
Hs.700844 | Transcribed locus. |
| 1 | 278 | |
Hs.700830 | Transcribed locus. |
| 1 | 278 | |
Hs.700762 | Heterogeneous nuclear ribonucleoprotein C (C1/C2). |
| 1 | 278 | |
Hs.700576 | ATP-binding cassette, sub-family D (ALD), member 3. |
| 1 | 278 | |
Hs.700445 | Transcribed locus. |
| 1 | 278 | |
Hs.700350 | Transcribed locus, moderately similar to NP_001013249.1 phosphoprotein enriched in astrocytes 15A [Rattus norvegicus]. |
| 1 | 278 | |
Hs.699980 | VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa. |
| 1 | 278 | |
Hs.699901 | Transcribed locus. |
| 1 | 278 | |
Hs.699526 | Transcribed locus. |
| 1 | 278 | |
Hs.699494 | Transcribed locus. |
| 1 | 278 | |
Hs.699445 | Myosin, heavy chain 2, skeletal muscle, adult. |
| 1 | 278 | |
Hs.699301 | Voltage-dependent anion channel 3. |
| 1 | 278 | |
Hs.696248 | Membrane-associated ring finger (C3HC4) 1. |
| 1 | 278 | |
Hs.696238 | Baculoviral IAP repeat-containing 2. |
| 1 | 278 | |
Hs.696109 | Tetratricopeptide repeat domain 17. |
| 1 | 278 | |
Hs.696074 | DEAH (Asp-Glu-Ala-His) box polypeptide 15. |
| 1 | 278 | |
Hs.694721 | CD24 molecule. |
| 1 | 278 | |
Hs.693867 | Transcribed locus, moderately similar to XP_001146330.1 PREDICTED: similar to DNA-binding protein TAXREB107 isoform 1 [Pan troglodytes]. |
| 1 | 278 | |
Hs.693837 | Interferon regulatory factor 2 binding protein 2. |
| 1 | 278 | |
Hs.693760 | Transcribed locus, moderately similar to XP_800750.2 PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]. |
| 1 | 278 | |
Hs.693730 | Transcribed locus. |
| 1 | 278 | |
Hs.693667 | Transcribed locus, strongly similar to NP_057427.3 centromere protein F [Homo sapiens]. |
| 1 | 278 | |
Hs.692790 | Transcribed locus. |
| 1 | 278 | |
Hs.692453 | Transcribed locus. |
| 1 | 278 | |
Hs.689733 | Transcribed locus. |
| 1 | 278 | |
Hs.6891 | Splicing factor, arginine/serine-rich 6. |
| 1 | 278 | |
Hs.687295 | Transcribed locus. |
| 1 | 278 | |
Hs.686241 | Transcribed locus. |
| 1 | 278 | |
Hs.685021 | CDNA clone IMAGE:5285703. |
| 1 | 278 | |
Hs.6838 | Rho family GTPase 3. |
| 1 | 278 | |
Hs.6834 | Formin binding protein 4. |
| 1 | 278 | |
Hs.683233 | Transcribed locus. |
| 1 | 278 | |
Hs.682393 | Transcribed locus. |
| 1 | 278 | |
Hs.681201 | Transcribed locus. |
| 1 | 278 | |
Hs.681187 | Transcribed locus. |
| 1 | 278 | |
Hs.680695 | Transcribed locus. |
| 1 | 278 | |
Hs.678918 | Myosin, heavy chain 7, cardiac muscle, beta. |
| 1 | 278 | |
Hs.678582 | Transcribed locus. |
| 1 | 278 | |
Hs.678312 | Transcribed locus. |
| 1 | 278 | |
Hs.677622 | Transcribed locus. |
| 1 | 278 | |
Hs.677041 | Transcribed locus. |
| 1 | 278 | |
Hs.676702 | Transcribed locus. |
| 1 | 278 | |
Hs.675663 | Transcribed locus. |
| 1 | 278 | |
Hs.675589 | Transcribed locus. |
| 1 | 278 | |
Hs.675588 | Transcribed locus. |
| 1 | 278 | |
Hs.674650 | Transcribed locus. |
| 1 | 278 | |
Hs.672910 | Transcribed locus. |
| 1 | 278 | |
Hs.672515 | Transcribed locus. |
| 1 | 278 | |
Hs.672054 | Transcribed locus. |
| 1 | 278 | |
Hs.668572 | Transcribed locus. |
| 1 | 278 | |
Hs.667359 | Transcribed locus. |
| 1 | 278 | |
Hs.667136 | Transcribed locus. |
| 1 | 278 | |
Hs.666746 | Transcribed locus. |
| 1 | 278 | |
Hs.665911 | Transcribed locus. |
| 1 | 278 | |
Hs.665869 | Chromosome 4 open reading frame 15. |
| 1 | 278 | |
Hs.665117 | Transcribed locus. |
| 1 | 278 | |
Hs.665105 | Transcribed locus. |
| 1 | 278 | |
Hs.665104 | Transcribed locus. |
| 1 | 278 | |
Hs.665101 | Transcribed locus. |
| 1 | 278 | |
Hs.665100 | Transcribed locus. |
| 1 | 278 | |
Hs.665099 | Transcribed locus. |
| 1 | 278 | |
Hs.665098 | Transcribed locus. |
| 1 | 278 | |
Hs.664874 | Transcribed locus. |
| 1 | 278 | |
Hs.664873 | Chromosome 6 open reading frame 59. |
| 1 | 278 | |
Hs.664872 | Transcribed locus. |
| 1 | 278 | |
Hs.664871 | Transcribed locus. |
| 1 | 278 | |
Hs.664868 | CDNA FLJ26447 fis, clone KDN02931. |
| 1 | 278 | |
Hs.664867 | Transcribed locus. |
| 1 | 278 | |
Hs.664866 | Transcribed locus. |
| 1 | 278 | |
Hs.664865 | Transcribed locus. |
| 1 | 278 | |
Hs.664577 | Transcribed locus. |
| 1 | 278 | |
Hs.664575 | Transcribed locus. |
| 1 | 278 | |
Hs.664574 | Transcribed locus. |
| 1 | 278 | |
Hs.664455 | CDNA FLJ12259 fis, clone MAMMA1001547. |
Source: NCBI UniGene
EST Sequences
4,907 EST sequences from this library have been submitted to the public sequence database as of 05-Jan-2009.
Source: NCBI GenBank
Click the button to save sequences to a file (FASTA format)
Keywords
- muscle
- soft tissue/muscle tissue tumor
- unknown developmental stage
- non-normalized
Source: NCBI Clone Registry