NCI_CGAP_HSC2

Library Description

Organism:	Homo sapiens
Developmental stage:	adult
Organ:	bone marrow
Tissue:	stem cell 34+/38+
Vector:	pAMP1
Vector type:	plasmid (ampicillin resistant)
Lab host:	DH10B

mRNA made from bone marrow, stem cells 34+/38+, cDNA made by oligo-dT priming. Directionally cloned. Size-selected on agarose gel, average insert size 400 bp. Primary library, non-amplified.

Source: Robert Strausberg, Ph.D.

Gene Content Analysis

1,359 ESTs from this library were grouped into 371 UniGene entries (putative genes) [UniGene build #218, 05-Jan-2009]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs	TPM	UniGene Entry
2	1472	Hs.672525	Transcribed locus.
2	1472	Hs.668470	Transcribed locus.
2	1472	Hs.668391	Transcribed locus.
2	1472	Hs.668061	Transcribed locus.
2	1472	Hs.662164	Ankyrin repeat domain 13B.
2	1472	Hs.656652	FLJ38717 protein.
2	1472	Hs.654864	HOP homeobox.
2	1472	Hs.654563	Intercellular adhesion molecule 3.
2	1472	Hs.654543	Tubulin, beta 2A.
2	1472	Hs.63489	Protein tyrosine phosphatase, non-receptor type 6.
2	1472	Hs.634522	Cold inducible RNA binding protein.
2	1472	Hs.602707	Transcribed locus, weakly similar to NP_036182.1 ribosomal protein S3 [Mus musculus].
2	1472	Hs.595418	Hypothetical protein LOC100233156.
2	1472	Hs.591768	Basic transcription factor 3.
2	1472	Hs.57813	Zinc ribbon domain containing 1.
2	1472	Hs.561483	Transcribed locus.
2	1472	Hs.560430	Transcribed locus, strongly similar to NP_001002486.1 ribosomal protein L38 [Danio rerio].
2	1472	Hs.551886	Transcribed locus.
2	1472	Hs.535464	Eukaryotic translation initiation factor 3, subunit C-like.
2	1472	Hs.534798	Transcribed locus.
2	1472	Hs.534333	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa.
2	1472	Hs.533122	Splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila).
2	1472	Hs.530461	Histone cluster 2, H2aa3.
2	1472	Hs.528713	Kinesin family member C2.
2	1472	Hs.523512	Tumor susceptibility gene 101.
2	1472	Hs.523185	Ribosomal protein L13a.
2	1472	Hs.521056	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2.
2	1472	Hs.515472	Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa.
2	1472	Hs.515169	TRM1 tRNA methyltransferase 1 homolog (S. cerevisiae).
2	1472	Hs.514220	Granulin.
2	1472	Hs.511605	Annexin A2.
2	1472	Hs.510328	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24.
2	1472	Hs.502875	V-rel reticuloendotheliosis viral oncogene homolog A (avian).
2	1472	Hs.501578	Mitochondrial GTPase 1 homolog (S. cerevisiae).
2	1472	Hs.474781	Neutrophil cytosolic factor 4, 40kDa.
2	1472	Hs.473286	Glucocorticoid modulatory element binding protein 2.
2	1472	Hs.461200	Clone HLS_IMAGE_136933 mRNA sequence.
2	1472	Hs.460558	Sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4.
2	1472	Hs.449621	Immunoglobulin kappa locus.
2	1472	Hs.436418	Transcribed locus.
2	1472	Hs.436287	Transcribed locus.
2	1472	Hs.433701	Ribosomal protein L37a.
2	1472	Hs.433419	Cytochrome c oxidase subunit IV isoform 1.
2	1472	Hs.429843	Transcribed locus.
2	1472	Hs.412870	Processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae).
2	1472	Hs.410111	ATP-binding cassette, sub-family C (CFTR/MRP), member 12.
2	1472	Hs.408960	Potassium inwardly-rectifying channel, subfamily J, member 10.
2	1472	Hs.406683	Ribosomal protein S15.
2	1472	Hs.386390	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
2	1472	Hs.380710	Matrix metallopeptidase 28.
2	1472	Hs.370504	Ribosomal protein S15a.
2	1472	Hs.36587	Protein phosphatase 1, regulatory (inhibitor) subunit 7.
2	1472	Hs.355333	Catechol-O-methyltransferase domain containing 1.
2	1472	Hs.355264	Cytochrome b-561.
2	1472	Hs.288809	Basic, immunoglobulin-like variable motif containing.
2	1472	Hs.263812	Nuclear distribution gene C homolog (A. nidulans).
2	1472	Hs.194329	Transcription elongation factor A (SII)-like 4.
2	1472	Hs.183684	Eukaryotic translation initiation factor 4 gamma, 2.
2	1472	Hs.180877	H3 histone, family 3B (H3.3B).
2	1472	Hs.174050	Endothelial differentiation-related factor 1.
2	1472	Hs.160849	Transcribed locus.
2	1472	Hs.160800	Transcribed locus.
2	1472	Hs.155782	Transcribed locus.
2	1472	Hs.15277	Small nuclear ribonucleoprotein 25kDa (U11/U12).
2	1472	Hs.149363	Chromosome 18 open reading frame 1.
2	1472	Hs.11615	Serine/threonine/tyrosine interacting-like 1.
2	1472	Hs.110571	Growth arrest and DNA-damage-inducible, beta.
1	736	Hs.99884	ADP-ribosylarginine hydrolase.
1	736	Hs.91816	RNA binding motif protein 7.
1	736	Hs.76095	Partial mRNA; ID YG40-2.
1	736	Hs.716846	Transcribed locus.
1	736	Hs.716384	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2).
1	736	Hs.714503	Transcribed locus.
1	736	Hs.713383	Transcribed locus.
1	736	Hs.713089	Transcribed locus.
1	736	Hs.709401	Tripartite motif-containing pseudogene 1.
1	736	Hs.709208	Guanine nucleotide binding protein (G protein), beta polypeptide 1.
1	736	Hs.709184	Amyloid beta (A4) precursor-like protein 2.
1	736	Hs.708256	Transcribed locus, moderately similar to NP_989488.2 eukaryotic translation elongation factor 1 alpha 1 [Gallus gallus].
1	736	Hs.708232	Family with sequence similarity 43, member A.
1	736	Hs.707052	Transcribed locus.
1	736	Hs.702552	Transcribed locus.
1	736	Hs.702218	Transcribed locus, strongly similar to NP_000220.1 lecithin-cholesterol acyltransferase precursor [Homo sapiens].
1	736	Hs.699841	Transcribed locus, moderately similar to XP_001116723.1 PREDICTED: immunoglobulin heavy constant alpha 2 (A2m marker) [Macaca mulatta].
1	736	Hs.697645	Transcribed locus, moderately similar to NP_001007968.1 ribosomal protein L30 [Gallus gallus].
1	736	Hs.695995	Chromosome 12 open reading frame 51.
1	736	Hs.694903	Transcribed locus, strongly similar to NP_113640.1 hypothetical protein LOC83640 [Homo sapiens].
1	736	Hs.690217	DNA-damage-inducible transcript 3.
1	736	Hs.689859	Transcribed locus.
1	736	Hs.688526	Transcribed locus.
1	736	Hs.688225	Transcribed locus.
1	736	Hs.685787	Transcribed locus.
1	736	Hs.681137	Transcribed locus.
1	736	Hs.675576	Transcribed locus.
1	736	Hs.6734	Chromosome 15 open reading frame 38.
1	736	Hs.672542	Transcribed locus.
1	736	Hs.672526	Transcribed locus.
1	736	Hs.667725	Transcribed locus.
1	736	Hs.666431	Transcribed locus, strongly similar to NP_002153.1 intercellular adhesion molecule 3 precursor [Homo sapiens].
1	736	Hs.661002	Transcribed locus, moderately similar to NP_998444.1 ribosomal protein S2 [Danio rerio].