BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= FNP_0256
(319 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148322821|gb|EDK88071.1| hypothetical protein FNP_0256 [... 556 e-157
gi|34763219|ref|ZP_00144182.1| hypothetical protein [Fusoba... 465 e-129
gi|19703575|ref|NP_603137.1| hypothetical protein FN0230 [F... 340 1e-91
gi|42526697|ref|NP_971795.1| hypothetical protein TDE1187 [... 323 7e-87
gi|24379584|ref|NP_721539.1| hypothetical protein SMU.1153c... 317 8e-85
gi|118053746|ref|ZP_01522289.1| putative transmembrane prot... 176 2e-42
gi|121531294|ref|ZP_01663900.1| putative transmembrane prot... 167 6e-40
gi|83746529|ref|ZP_00943580.1| Hypothetical Protein RRSL_03... 167 8e-40
gi|83748429|ref|ZP_00945452.1| Hypothetical Protein RRSL_01... 167 1e-39
gi|153887734|ref|ZP_02008883.1| putative transmembrane prot... 166 2e-39
gi|17548734|ref|NP_522074.1| PUTATIVE TRANSMEMBRANE PROTEIN... 163 1e-38
gi|121528419|ref|ZP_01661033.1| putative transmembrane prot... 163 1e-38
gi|17546957|ref|NP_520359.1| PROBABLE TRANSMEMBRANE PROTEIN... 157 1e-36
gi|78063508|ref|YP_373416.1| hypothetical protein Bcep18194... 154 7e-36
gi|134292846|ref|YP_001116582.1| hypothetical protein Bcep1... 150 1e-34
gi|19703574|ref|NP_603136.1| hypothetical protein FN0229 [F... 132 2e-29
gi|119717430|ref|YP_924395.1| putative transmembrane protei... 105 3e-21
>gi|148322821|gb|EDK88071.1| hypothetical protein FNP_0256 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 319
Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats.
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MITKCNNWNKIFHKISRSFIVMLKYLKSLFYLFVFYFFFNFSSNLLATEIKAQEKLYGIT 60
MITKCNNWNKIFHKISRSFIVMLKYLKSLFYLFVFYFFFNFSSNLLATEIKAQEKLYGIT
Sbjct: 1 MITKCNNWNKIFHKISRSFIVMLKYLKSLFYLFVFYFFFNFSSNLLATEIKAQEKLYGIT 60
Query: 61 IDDGWYDDVKIEDIIDGIKNLPVKPVVRIVMSKDIKPKDYVSLFSKVHKVAYIMAQPVDS 120
IDDGWYDDVKIEDIIDGIKNLPVKPVVRIVMSKDIKPKDYVSLFSKVHKVAYIMAQPVDS
Sbjct: 61 IDDGWYDDVKIEDIIDGIKNLPVKPVVRIVMSKDIKPKDYVSLFSKVHKVAYIMAQPVDS 120
Query: 121 FEMNTYKNIESYRNRFEDSYRYLKDYVDIWEIGNEVNGEEWIKENPKLTAKKIYSAYKFI 180
FEMNTYKNIESYRNRFEDSYRYLKDYVDIWEIGNEVNGEEWIKENPKLTAKKIYSAYKFI
Sbjct: 121 FEMNTYKNIESYRNRFEDSYRYLKDYVDIWEIGNEVNGEEWIKENPKLTAKKIYSAYKFI 180
Query: 181 KSKNGITALTPYYFPPEENEISMENWLKKYIPVDMKNGLDYVFISYYEDDNDGFQPKWKN 240
KSKNGITALTPYYFPPEENEISMENWLKKYIPVDMKNGLDYVFISYYEDDNDGFQPKWKN
Sbjct: 181 KSKNGITALTPYYFPPEENEISMENWLKKYIPVDMKNGLDYVFISYYEDDNDGFQPKWKN 240
Query: 241 IFINLEKIFPNSKLGIGECGNTSQNATKESKIKMINHYYSMPKYTANYVGGYFWWYWVQD 300
IFINLEKIFPNSKLGIGECGNTSQNATKESKIKMINHYYSMPKYTANYVGGYFWWYWVQD
Sbjct: 241 IFINLEKIFPNSKLGIGECGNTSQNATKESKIKMINHYYSMPKYTANYVGGYFWWYWVQD 300
Query: 301 CVPYKNNEVWSEILNIMKN 319
CVPYKNNEVWSEILNIMKN
Sbjct: 301 CVPYKNNEVWSEILNIMKN 319
>gi|34763219|ref|ZP_00144182.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|27887099|gb|EAA24207.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 275
Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats.
Identities = 246/275 (89%), Positives = 261/275 (94%)
Query: 45 LLATEIKAQEKLYGITIDDGWYDDVKIEDIIDGIKNLPVKPVVRIVMSKDIKPKDYVSLF 104
+LATEIK QEKLYGITIDD WYDDVKIEDIIDGIKNLP+KPVVRIVMSKDIKPKDY+SLF
Sbjct: 1 MLATEIKIQEKLYGITIDDSWYDDVKIEDIIDGIKNLPIKPVVRIVMSKDIKPKDYISLF 60
Query: 105 SKVHKVAYIMAQPVDSFEMNTYKNIESYRNRFEDSYRYLKDYVDIWEIGNEVNGEEWIKE 164
S+VHKVAYIMAQPVDSFEMNTYKN+ESYR RFEDSY+YLKDYVDIWEIGNEVNGEEWIKE
Sbjct: 61 SEVHKVAYIMAQPVDSFEMNTYKNVESYRKRFEDSYKYLKDYVDIWEIGNEVNGEEWIKE 120
Query: 165 NPKLTAKKIYSAYKFIKSKNGITALTPYYFPPEENEISMENWLKKYIPVDMKNGLDYVFI 224
NPK TAKKIYSAYKFIKSKNGITALTPYYFPPEEN+ISMENWL KYIP DMK+GLDYVF+
Sbjct: 121 NPKFTAKKIYSAYKFIKSKNGITALTPYYFPPEENKISMENWLVKYIPKDMKSGLDYVFV 180
Query: 225 SYYEDDNDGFQPKWKNIFINLEKIFPNSKLGIGECGNTSQNATKESKIKMINHYYSMPKY 284
SYYE+DND FQPKWK +F NLEKIFPNSKLGIGECGNTSQNATK+SKIKMINHYYSM KY
Sbjct: 181 SYYENDNDNFQPKWKEVFTNLEKIFPNSKLGIGECGNTSQNATKQSKIKMINHYYSMTKY 240
Query: 285 TANYVGGYFWWYWVQDCVPYKNNEVWSEILNIMKN 319
T NYVGGYFWWYWVQDC+PYKNNEVW E+ N MK+
Sbjct: 241 TTNYVGGYFWWYWVQDCIPYKNNEVWLELSNNMKD 275
>gi|19703575|ref|NP_603137.1| hypothetical protein FN0230 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19713675|gb|AAL94436.1| Hypothetical protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 232
Score = 340 bits (871), Expect = 1e-91, Method: Composition-based stats.
Identities = 200/228 (87%), Positives = 214/228 (93%)
Query: 22 MLKYLKSLFYLFVFYFFFNFSSNLLATEIKAQEKLYGITIDDGWYDDVKIEDIIDGIKNL 81
MLKYLKS FYLF+FYFFFNFSSNLLATEIK+QEKLYGITIDD WYDD KIE+II+GIKNL
Sbjct: 1 MLKYLKSSFYLFIFYFFFNFSSNLLATEIKSQEKLYGITIDDSWYDDEKIENIIEGIKNL 60
Query: 82 PVKPVVRIVMSKDIKPKDYVSLFSKVHKVAYIMAQPVDSFEMNTYKNIESYRNRFEDSYR 141
PVKPVVRIVMSKDIKPKDYVSLF KVHK AYIMAQP+DSFEMNTYKN+ESYR RFEDSY+
Sbjct: 61 PVKPVVRIVMSKDIKPKDYVSLFRKVHKAAYIMAQPIDSFEMNTYKNVESYRKRFEDSYK 120
Query: 142 YLKDYVDIWEIGNEVNGEEWIKENPKLTAKKIYSAYKFIKSKNGITALTPYYFPPEENEI 201
YLKDYVDIWEIGNEVNGEEWIKE+PK T KKIYSAYK IKSKNGITALTPYYFPPEEN+I
Sbjct: 121 YLKDYVDIWEIGNEVNGEEWIKESPKFTVKKIYSAYKLIKSKNGITALTPYYFPPEENKI 180
Query: 202 SMENWLKKYIPVDMKNGLDYVFISYYEDDNDGFQPKWKNIFINLEKIF 249
SMENWL+KYIP DMK+GLDYVFISYYEDDND FQPKWK++F L+K F
Sbjct: 181 SMENWLEKYIPKDMKSGLDYVFISYYEDDNDNFQPKWKDVFTILKKYF 228
>gi|42526697|ref|NP_971795.1| hypothetical protein TDE1187 [Treponema denticola ATCC 35405]
gi|41817012|gb|AAS11706.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
Length = 305
Score = 323 bits (829), Expect = 7e-87, Method: Composition-based stats.
Identities = 157/288 (54%), Positives = 209/288 (72%), Gaps = 6/288 (2%)
Query: 32 LFVFYFFFNFSSNLLATE------IKAQEKLYGITIDDGWYDDVKIEDIIDGIKNLPVKP 85
L++F+ F+ L A E + Q+ + GITIDD WY+ VK+E +++ +KN+ KP
Sbjct: 8 LYLFFLSCIFAGMLFAQEQGSKIRFQDQDFILGITIDDSWYETVKLEAVVNALKNMKTKP 67
Query: 86 VVRIVMSKDIKPKDYVSLFSKVHKVAYIMAQPVDSFEMNTYKNIESYRNRFEDSYRYLKD 145
VRIVMSKD Y+ +F ++ KVAYI+A PVDS++M YK + SY+ RF+ +Y L
Sbjct: 68 TVRIVMSKDESVSMYIPIFEEIGKVAYILACPVDSYDMKYYKTVYSYKKRFKTAYEVLGK 127
Query: 146 YVDIWEIGNEVNGEEWIKENPKLTAKKIYSAYKFIKSKNGITALTPYYFPPEENEISMEN 205
Y D+WEIGNE+NGE+W+ +NPKL A K+ +AY FIKSK GIT +T Y F P +I M +
Sbjct: 128 YTDMWEIGNEINGEDWLGKNPKLIADKVAAAYDFIKSKEGITVVTAYAFAPGMQKIEMID 187
Query: 206 WLKKYIPVDMKNGLDYVFISYYEDDNDGFQPKWKNIFINLEKIFPNSKLGIGECGNTSQN 265
WLK Y+P +KN +DY+ +SYYEDDN+GFQP W IF LE IFPNSKLGIGECG+T +N
Sbjct: 188 WLKTYLPPRIKNNVDYLLVSYYEDDNEGFQPDWGKIFAVLESIFPNSKLGIGECGSTDEN 247
Query: 266 ATKESKIKMINHYYSMPKYTANYVGGYFWWYWVQDCVPYKNNEVWSEI 313
A +++K+ MI HYY MPKYT N++GGYFWWYWVQDCVP++NN +W EI
Sbjct: 248 ADEKTKLNMIRHYYGMPKYTKNFIGGYFWWYWVQDCVPHENNVLWEEI 295
>gi|24379584|ref|NP_721539.1| hypothetical protein SMU.1153c [Streptococcus mutans UA159]
gi|24377531|gb|AAN58845.1|AE014952_3 hypothetical protein SMU_1153c [Streptococcus mutans UA159]
Length = 303
Score = 317 bits (811), Expect = 8e-85, Method: Composition-based stats.
Identities = 158/287 (55%), Positives = 203/287 (70%), Gaps = 1/287 (0%)
Query: 32 LFVFYFFFNFSSNLLATEIKAQEKLYGITIDDGWYDDVKIEDIIDGIKNLPVKPVVRIVM 91
+ VF F T +K +LYG+TIDD WYD K+ DII +K +PVKP VRIVM
Sbjct: 17 ILVFIGIFVSKVRPTKTTLKKDTQLYGVTIDDSWYDRTKMTDIIAALKAMPVKPTVRIVM 76
Query: 92 SKDIKPKDYVSLFSKVHKVAYIMAQPVDSFEMNTYKNIESYRNRFEDSYRYLKDYVDIWE 151
SKD PK YV+LF K+HKVAY+MA PVDS+EMN YK++ SYR RF +Y YL Y DIWE
Sbjct: 77 SKDSSPKSYVNLFRKLHKVAYVMACPVDSYEMNLYKDVNSYRKRFAVAYHYLSSYTDIWE 136
Query: 152 IGNEVNGEEWIKENPKLTAKKIYSAYKFIKSKNGITALTPYYFPPEENEISMENWLKKYI 211
IGNEVNG +WIK+ L +K+ + + I S G TALT YY P+ + M W+KK I
Sbjct: 137 IGNEVNGTDWIKQKNTLITQKLKAVCQTISSAGGKTALTFYYENPKYDH-DMIAWIKKNI 195
Query: 212 PVDMKNGLDYVFISYYEDDNDGFQPKWKNIFINLEKIFPNSKLGIGECGNTSQNATKESK 271
PV +++ +DY FISYYEDDN+G+QP W+++F L+ +FPNS +G+GECGNT+ NAT+ SK
Sbjct: 196 PVMLRSRVDYGFISYYEDDNEGYQPDWQSVFNQLQNLFPNSNVGMGECGNTADNATENSK 255
Query: 272 IKMINHYYSMPKYTANYVGGYFWWYWVQDCVPYKNNEVWSEILNIMK 318
I M YY+MPKYT +YVGGYFWW WVQDCVP++NN ++ I +K
Sbjct: 256 IAMAKRYYTMPKYTKHYVGGYFWWEWVQDCVPHENNPIYDAINKSLK 302
>gi|118053746|ref|ZP_01522289.1| putative transmembrane protein [Comamonas testosteroni KF-1]
gi|117998954|gb|EAV13115.1| putative transmembrane protein [Comamonas testosteroni KF-1]
Length = 288
Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats.
Identities = 102/262 (38%), Positives = 151/262 (57%), Gaps = 18/262 (6%)
Query: 56 LYGITIDDGWYDDVKIEDIIDGIKNLPVKPVVRIVMSKDIKPKDYVSLFSKVHKVAYIMA 115
+YG+T+DD ++ DI + +L +P RIV + + P Y ++ KV+Y+M
Sbjct: 32 IYGVTVDDV----SRLNDITRSLSSLAYRPTTRIVFDEFVNPDYYRKPAVEISKVSYVMG 87
Query: 116 QPVDSFEMNTYKNIESYRNRFEDSYRYLKDYVDIWEIGNEVNGEEWIKENPKLTAKKIYS 175
+ +DS+ + Y +++ Y R L D VDIWE+ NEVNGE W+ N + AK + +
Sbjct: 88 EILDSYYVKQY-SVDGYIQRTNQYLNALSDVVDIWEVANEVNGE-WLGANADVVAK-MTN 144
Query: 176 AYKFIKSKNGITALTPYY----FPPEENEISMENWLKKYIPVDMKNGLDYVFISYYEDDN 231
AY +K++N A+T YY + NE M W + +P MK GLDYV+ISYYEDD
Sbjct: 145 AYNIVKAQNKTAAVTLYYNQGCWSQSSNE--MFKWAEANVPAYMKQGLDYVWISYYEDDC 202
Query: 232 DGFQPKWKNIFINLEKIFPNSKLGIGECGNTSQNATKESKIKMINHYYSMPKYTANYVGG 291
+G +P W+ +F L +FPNSK+G GE G + K K + + YY+M T NYVGG
Sbjct: 203 NGLKPNWQQVFDKLHVMFPNSKIGFGEVGTSR----KTKKAEYLTRYYTMKITTPNYVGG 258
Query: 292 YFWWYWVQDCVPYKNNEVWSEI 313
+FWWY+ QD VP E+W+ +
Sbjct: 259 HFWWYFRQDMVPV-TKELWTTL 279
>gi|121531294|ref|ZP_01663900.1| putative transmembrane protein [Ralstonia pickettii 12J]
gi|153884357|ref|ZP_02005516.1| putative transmembrane protein [Ralstonia pickettii 12D]
gi|121301718|gb|EAX42690.1| putative transmembrane protein [Ralstonia pickettii 12J]
gi|151579390|gb|EDN43787.1| putative transmembrane protein [Ralstonia pickettii 12D]
Length = 294
Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 96/260 (36%), Positives = 144/260 (55%), Gaps = 14/260 (5%)
Query: 56 LYGITIDDGWYDDVKIEDIIDGIKNLPVKPVVRIVMSKDIKPKDYVSLFSKVHKVAYIMA 115
LYG+T+D DDV ++D + +L P VR+V + ++ DY + + + +VAY+M
Sbjct: 36 LYGVTVDA--VDDVPA--VVDALAHLSRIPTVRVVFDEGMRAADYAAPVAAIRRVAYVMG 91
Query: 116 QPVDSFEMNTYKNIESYRNRFEDSYRYLKDYVDIWEIGNEVNGEEWIKENPKLTAKKIYS 175
+ DS + Y ++ R R + L VD+WEIGNE+NGE W P+ K +
Sbjct: 92 ELADSSTLRQY-SVRQIRERADAYVGALGSNVDVWEIGNEINGE-WTGR-PRDVVDKTVA 148
Query: 176 AYKFIKSKNGITALTPYYFP--PEENEISMENWLKKYIPVDMKNGLDYVFISYYEDDNDG 233
AY + G TALT YY EE +M W + +P ++NG+DYVFIS+YEDD
Sbjct: 149 AYDVVTQHGGRTALTLYYNEGCAEEPSHAMFRWTESRVPASLRNGVDYVFISFYEDDCRV 208
Query: 234 FQPKWKNIFINLEKIFPNSKLGIGECGNTSQNATKESKIKMINHYYSMPKYTANYVGGYF 293
P W +F L ++FP++ LG GE G +++A + K +I HYY + + GGYF
Sbjct: 209 PSPDWNVVFGRLGRLFPHAVLGFGEVG--TRHAAR--KAALIAHYYGLTISHPRFAGGYF 264
Query: 294 WWYWVQDCVPYKNNEVWSEI 313
WWY+ QD VP ++ +W I
Sbjct: 265 WWYFRQDMVP-RSRPLWRNI 283
>gi|83746529|ref|ZP_00943580.1| Hypothetical Protein RRSL_03527 [Ralstonia solanacearum UW551]
gi|83726860|gb|EAP73987.1| Hypothetical Protein RRSL_03527 [Ralstonia solanacearum UW551]
Length = 331
Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats.
Identities = 98/293 (33%), Positives = 152/293 (51%), Gaps = 30/293 (10%)
Query: 42 SSNLLATEIKAQEKLYGITIDDGWYDDVKIEDIIDGIKNLPVKPVVRIVMSKDIKPKDYV 101
+SN A + + +YG+T+DD I I+ + +LP KP VR+V DY
Sbjct: 33 ASNASAQATRPKAPIYGVTLDDV----SNINAIVASLTHLPYKPTVRVVFDPGTSATDYY 88
Query: 102 SLFSKVHKVAYIMAQPVDSFEMNTYKNIESYRNRFEDSYRYLKDYVDIWEIGNEVNGEEW 161
K+H VAY+M + +DS+ T ++ +Y+ R ++ LK+ VD+WEI NE+NGE W
Sbjct: 89 PALVKLHSVAYVMGEIMDSYYFPT--DLATYQARTQELVGTLKNVVDVWEIANEINGE-W 145
Query: 162 IKENP-----------KLTAKKIYSAYKFIKSKNGITALTPYYFPPEEN----EISMENW 206
++ +P + + SAY +KS G+ A+T YY + ++ M++W
Sbjct: 146 LRNDPNGPTSLATSEEQAIGTMVGSAYDIVKSNGGLAAVTMYYNDDGKGNNCWQLPMDSW 205
Query: 207 ---LKKYIPVDMKNGLDYVFISYYE-DDNDGFQPKWKNIFINLEKIFPNSKLGIGECGNT 262
++P ++ G DY SYY D G P W N F LE++FP +K+G GE G +
Sbjct: 206 RTWATTFLPARVRQGADYALFSYYPYQDCPGLSPSWTNDFKLLEQVFPVAKVGFGEIGTS 265
Query: 263 SQNATKESKIKMINHYYSM-PKYTAN---YVGGYFWWYWVQDCVPYKNNEVWS 311
S A K + +I YY M K A ++GGYFWW +V+ +PY + WS
Sbjct: 266 SIYAPKSVQQSLITTYYPMGTKQMAGDTRFIGGYFWWNYVEQMLPYSTSSYWS 318
>gi|83748429|ref|ZP_00945452.1| Hypothetical Protein RRSL_01826 [Ralstonia solanacearum UW551]
gi|83724945|gb|EAP72100.1| Hypothetical Protein RRSL_01826 [Ralstonia solanacearum UW551]
Length = 367
Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 95/260 (36%), Positives = 140/260 (53%), Gaps = 14/260 (5%)
Query: 56 LYGITIDDGWYDDVKIEDIIDGIKNLPVKPVVRIVMSKDIKPKDYVSLFSKVHKVAYIMA 115
L+G+T+D DDV ++D + +L P VRIV + + Y + + + +VAY+M
Sbjct: 103 LFGVTVDA--VDDVN--SVVDALAHLSHTPTVRIVFDEGMDAAHYAAPVAAIRRVAYVMG 158
Query: 116 QPVDSFEMNTYKNIESYRNRFEDSYRYLKDYVDIWEIGNEVNGEEWIKENPKLTAKKIYS 175
+ +DS + Y ++ R D L VD+WEIGNE+NGE W + K + +
Sbjct: 159 ELIDSSTLRMY-SVRQVGERATDYLDVLAGSVDLWEIGNEINGE-WTGRTRDVVDKTL-A 215
Query: 176 AYKFIKSKNGITALTPYYFP--PEENEISMENWLKKYIPVDMKNGLDYVFISYYEDDNDG 233
AY +K + TALT YY E+ +M +W + +P ++NG+DYVFISYYEDD
Sbjct: 216 AYDAVKQRGARTALTLYYNEGCAEQPSRAMFDWAGRNLPARLRNGVDYVFISYYEDDCPI 275
Query: 234 FQPKWKNIFINLEKIFPNSKLGIGECGNTSQNATKESKIKMINHYYSMPKYTANYVGGYF 293
P W +F L ++FP++ LG GE G E K +I HYY + YVGGYF
Sbjct: 276 APPDWNAVFARLGELFPHAALGFGEVGTRH----AERKPALIAHYYGLTVEHPRYVGGYF 331
Query: 294 WWYWVQDCVPYKNNEVWSEI 313
WW + QD VP ++ +W I
Sbjct: 332 WWSFRQDMVP-RSRPLWRHI 350
>gi|153887734|ref|ZP_02008883.1| putative transmembrane protein [Ralstonia pickettii 12D]
gi|151575848|gb|EDN40255.1| putative transmembrane protein [Ralstonia pickettii 12D]
Length = 331
Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 93/295 (31%), Positives = 152/295 (51%), Gaps = 30/295 (10%)
Query: 47 ATEIKAQEKLYGITIDDGWYDDVKIEDIIDGIKNLPVKPVVRIVMSKDIKPKDYVSLFSK 106
A + + +YG+T+DD I I+ + +LP KP VR+V + Y +
Sbjct: 38 AQATRPKAPIYGVTVDDV----SNINAIVASLTHLPYKPTVRVVFDPGMSAAQYYPALVE 93
Query: 107 VHKVAYIMAQPVDSFEMNTYKNIESYRNRFEDSYRYLKDYVDIWEIGNEVNGEEWIKENP 166
+H VAY+M + +DS+ + ++++Y +R + LK+ VD+WEI NE+NGE W++ +P
Sbjct: 94 LHAVAYVMGEIMDSYYFPS--DLQTYTDRTNELVGTLKNVVDVWEIANEINGE-WLRADP 150
Query: 167 -----------KLTAKKIYSAYKFIKSKNGITALTPYYFPPEEN----EISMENW---LK 208
+ + +A+ +K+ G+TA+T YY + E+ M++W +
Sbjct: 151 TGPNSVAASEEQDIGNMVAAAHDIVKAAGGLTAVTMYYNDDGKGTNCYELPMDSWRTWAQ 210
Query: 209 KYIPVDMKNGLDYVFISYYE-DDNDGFQPKWKNIFINLEKIFPNSKLGIGECGNTSQNAT 267
Y+P ++ G DY SYY D G P W N F LE IFP +K+G GE G +S +A
Sbjct: 211 TYLPARVRQGADYALFSYYPYQDCPGLHPTWANDFKLLESIFPVAKVGFGEIGTSSTSAP 270
Query: 268 KESKIKMINHYYSMPKYT----ANYVGGYFWWYWVQDCVPYKNNEVWSEILNIMK 318
+ +I YY M T ++GGYFWW + + +PY + WS + N +K
Sbjct: 271 ASVQQNLIKSYYPMGTTTMAADPRFIGGYFWWNYAEQMLPYSTSSYWSLLSNTIK 325
>gi|17548734|ref|NP_522074.1| PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum GMI1000]
gi|17430983|emb|CAD17664.1| putative transmembrane protein [Ralstonia solanacearum]
Length = 295
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 92/260 (35%), Positives = 141/260 (54%), Gaps = 14/260 (5%)
Query: 56 LYGITIDDGWYDDVKIEDIIDGIKNLPVKPVVRIVMSKDIKPKDYVSLFSKVHKVAYIMA 115
L+G+T+D DDV ++D + +L P RIV + + Y + + + +VAY+M
Sbjct: 35 LFGVTVDA--VDDVN--GVVDALAHLSRTPTARIVFDEGMDAAHYAAPVAAIRRVAYVMG 90
Query: 116 QPVDSFEMNTYKNIESYRNRFEDSYRYLKDYVDIWEIGNEVNGEEWIKENPKLTAKKIYS 175
+ +DS + Y ++ R D L D VD+WEIGNE+NGE W ++ K + +
Sbjct: 91 ELIDSSTLRLY-SVRQVGARATDYLDVLGDSVDLWEIGNEINGE-WTGRTREVVDKTL-A 147
Query: 176 AYKFIKSKNGITALTPYYFP--PEENEISMENWLKKYIPVDMKNGLDYVFISYYEDDNDG 233
Y + + TALT YY + + +M +W + +P ++NG+DYVFISYYEDD
Sbjct: 148 VYDAARQRGVRTALTLYYNEGCAGQPDRAMFDWAARNLPARLRNGVDYVFISYYEDDCKI 207
Query: 234 FQPKWKNIFINLEKIFPNSKLGIGECGNTSQNATKESKIKMINHYYSMPKYTANYVGGYF 293
P W +F L +FP++ LG GE G + K +I HYY + + YVGGYF
Sbjct: 208 APPDWDAVFTRLGGLFPHAALGFGEVGTRH----ADRKRALIAHYYGLTVHHPRYVGGYF 263
Query: 294 WWYWVQDCVPYKNNEVWSEI 313
WWY+ QD VP ++ +W +I
Sbjct: 264 WWYFRQDMVP-RSRPLWRDI 282
>gi|121528419|ref|ZP_01661033.1| putative transmembrane protein [Ralstonia pickettii 12J]
gi|121305187|gb|EAX46151.1| putative transmembrane protein [Ralstonia pickettii 12J]
Length = 318
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 93/295 (31%), Positives = 151/295 (51%), Gaps = 30/295 (10%)
Query: 47 ATEIKAQEKLYGITIDDGWYDDVKIEDIIDGIKNLPVKPVVRIVMSKDIKPKDYVSLFSK 106
A + + +YG+T+DD I I+ + +LP KP VR+V Y K
Sbjct: 25 AQATRPKAPIYGVTVDDV----SNINAIVASLTHLPYKPTVRVVFDPGTTAAQYYPALVK 80
Query: 107 VHKVAYIMAQPVDSFEMNTYKNIESYRNRFEDSYRYLKDYVDIWEIGNEVNGEEWIKENP 166
+H VAY+M + +DS+ + ++++Y +R + LK+ VD+WEI NE+NGE W++ +P
Sbjct: 81 LHAVAYVMGEIMDSYYFPS--DLQTYTDRTNELVGTLKNVVDVWEIANEINGE-WLRTDP 137
Query: 167 -----------KLTAKKIYSAYKFIKSKNGITALTPYYFPPEEN----EISMENW---LK 208
+ + +A+ +K+ G+TA+T YY + E+ M++W +
Sbjct: 138 TGPNSVAASEEQDIGNMVAAAHDIVKAAGGLTAVTMYYNDDGKGTNCYELPMDSWRTWAQ 197
Query: 209 KYIPVDMKNGLDYVFISYYE-DDNDGFQPKWKNIFINLEKIFPNSKLGIGECGNTSQNAT 267
Y+P ++ G DY SYY D G P W N F LE IFP +K+G GE G +S +A
Sbjct: 198 SYLPARVRQGADYALFSYYPYQDCPGLNPTWANDFKLLESIFPVAKVGFGEIGTSSTSAP 257
Query: 268 KESKIKMINHYYSMPKYTA----NYVGGYFWWYWVQDCVPYKNNEVWSEILNIMK 318
+ ++ YY M T ++GGYFWW + + +PY + WS + N +K
Sbjct: 258 ASVQQNLLKSYYPMGTTTMAADRRFIGGYFWWNYAEQMLPYSTSSYWSLLNNTIK 312
>gi|17546957|ref|NP_520359.1| PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum GMI1000]
gi|17429258|emb|CAD15945.1| probable transmembrane protein [Ralstonia solanacearum]
Length = 331
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 91/293 (31%), Positives = 147/293 (50%), Gaps = 30/293 (10%)
Query: 42 SSNLLATEIKAQEKLYGITIDDGWYDDVKIEDIIDGIKNLPVKPVVRIVMSKDIKPKDYV 101
+ N A + + +YG+T+DD I I+ + +LP KP VR+V Y
Sbjct: 33 AGNASAQATRPKAPIYGVTLDDV----SNINAIVASLTHLPYKPTVRVVFDPGTTAAQYY 88
Query: 102 SLFSKVHKVAYIMAQPVDSFEMNTYKNIESYRNRFEDSYRYLKDYVDIWEIGNEVNGEEW 161
K+H VAY+M + +DS+ T ++ +Y+ R ++ LK+ VD+WEI NE+NGE W
Sbjct: 89 PALVKLHAVAYVMGEIMDSYYFPT--DLATYQARTQELVGTLKNVVDVWEIANEINGE-W 145
Query: 162 IKENP-----------KLTAKKIYSAYKFIKSKNGITALTPYYFPPEEN----EISMENW 206
++ NP + + + SAY +K G+ ++T YY + E+ M++W
Sbjct: 146 LRANPSGPTATATSQEQAIGQMVGSAYDIVKGAGGLVSVTMYYNDDGKGTNCYELPMDSW 205
Query: 207 ---LKKYIPVDMKNGLDYVFISYYE-DDNDGFQPKWKNIFINLEKIFPNSKLGIGECGNT 262
++P ++ G DY SYY D G P W + F LE+IFP +K+G GE G +
Sbjct: 206 RTWATNFLPARVRQGADYALFSYYPYQDCPGLSPTWTSDFKLLEQIFPVAKVGFGEIGTS 265
Query: 263 SQNATKESKIKMINHYYSMPKYT----ANYVGGYFWWYWVQDCVPYKNNEVWS 311
S A + +I YY + ++GGYFWW +V+ +PY + W+
Sbjct: 266 SIYAPTSVQQSLIKTYYPIGTTQMASDPRFIGGYFWWNYVEQMLPYTTSTYWN 318
>gi|78063508|ref|YP_373416.1| hypothetical protein Bcep18194_B2661 [Burkholderia sp. 383]
gi|77971393|gb|ABB12772.1| hypothetical protein Bcep18194_B2661 [Burkholderia sp. 383]
Length = 322
Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 90/273 (32%), Positives = 142/273 (52%), Gaps = 28/273 (10%)
Query: 56 LYGITIDDGWYDDVKIEDIIDGIKNLPVKPVVRIVMSKDIKPKDYVSLFSKVHKVAYIMA 115
+YG+T+DD K++ I+ ++NLP KP VR+V DY + ++H VAY+M
Sbjct: 40 VYGVTLDD----LTKLDAIVASLQNLPYKPTVRVVFDPGTSAADYYAPLLRLHAVAYVMG 95
Query: 116 QPVDSFEMNTYKNIESYRNRFEDSYRYLKDYVDIWEIGNEVNGEEWIKENPKLT------ 169
+ DS+ T + +Y+ R ++ LK+ VD+WEI NE+NGE W++ NP T
Sbjct: 96 EIYDSYYFPT--TLATYQARTQELVSQLKNTVDVWEIANEINGE-WLRNNPSGTNAVVNS 152
Query: 170 -----AKKIYSAYKFIKSKNGITALTPYYFPP-------EENEISMENWLKKYIPVDMKN 217
+ + +A + +KS G TA+T YY E+ + + W ++ ++
Sbjct: 153 QEQQIGQMVAAANQIVKSNGGKTAITLYYNDDSKGNNCWEKPQDYWKTWPTTFLSTTVRQ 212
Query: 218 GLDYVFISYYE-DDNDGFQPKWKNIFINLEKIFPNSKLGIGECGNTSQNATKESKIKMIN 276
DY SYY D G P WKN F LE IFPN+K+G GE G + +A + +I
Sbjct: 213 QADYALFSYYPYQDCTGLNPTWKNDFAALESIFPNAKVGFGEIGTSETSAPASVQQNLIK 272
Query: 277 HYYSMPKYTAN--YVGGYFWWYWVQDCVPYKNN 307
YY M + ++GG+FWW +V+ +PY +
Sbjct: 273 TYYPMVDSMNDPRFIGGFFWWNYVEQMLPYSTS 305
>gi|134292846|ref|YP_001116582.1| hypothetical protein Bcep1808_4137 [Burkholderia vietnamiensis G4]
gi|134136003|gb|ABO57117.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
Length = 326
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 87/270 (32%), Positives = 139/270 (51%), Gaps = 28/270 (10%)
Query: 56 LYGITIDDGWYDDVKIEDIIDGIKNLPVKPVVRIVMSKDIKPKDYVSLFSKVHKVAYIMA 115
+YG+T+DD K++ I+ ++NLP +P VR+V DY + ++H VAY+M
Sbjct: 44 VYGVTLDD----LTKLDAIVASLQNLPYRPTVRVVFDPGTSAADYYAPLLRLHSVAYVMG 99
Query: 116 QPVDSFEMNTYKNIESYRNRFEDSYRYLKDYVDIWEIGNEVNGEEWIKENPKLT------ 169
+ DS+ T + +Y+ R ++ LK+ VD+WEI NE+NGE W++ +P T
Sbjct: 100 EIYDSYYFPT--TLSAYQARTQELVSQLKNTVDVWEIANEINGE-WLRNDPNGTNTVVNS 156
Query: 170 -----AKKIYSAYKFIKSKNGITALTPYYFPPEEN-------EISMENWLKKYIPVDMKN 217
+ + +A +KS G TA+T YY + + + W ++ ++
Sbjct: 157 EEQQIGQMVAAANTIVKSNGGKTAITLYYNDDSKGNNCWAKPQDYWKTWPTNFLSSTVRQ 216
Query: 218 GLDYVFISYYE-DDNDGFQPKWKNIFINLEKIFPNSKLGIGECGNTSQNATKESKIKMIN 276
DY SYY D G P WKN F LE IFPN+K+G GE G + A + +I
Sbjct: 217 QADYALFSYYPYQDCPGLSPSWKNDFAALESIFPNAKVGFGEIGTSDIAAPTSVQQNLIT 276
Query: 277 HYYSMPKYTAN--YVGGYFWWYWVQDCVPY 304
YY M + ++GG+FWW +V++ +PY
Sbjct: 277 TYYPMVNSMTDPRFIGGFFWWNYVEEMLPY 306
>gi|19703574|ref|NP_603136.1| hypothetical protein FN0229 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19713674|gb|AAL94435.1| Hypothetical protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 81
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 67/77 (87%), Positives = 70/77 (90%)
Query: 242 FINLEKIFPNSKLGIGECGNTSQNATKESKIKMINHYYSMPKYTANYVGGYFWWYWVQDC 301
F LEKIFPNSKLGIGECGNTSQNATK+SKIKMINHYYSM KYT NYVGGYFWWYWVQDC
Sbjct: 5 FYYLEKIFPNSKLGIGECGNTSQNATKQSKIKMINHYYSMTKYTTNYVGGYFWWYWVQDC 64
Query: 302 VPYKNNEVWSEILNIMK 318
+PYKNNEVW E+ N MK
Sbjct: 65 IPYKNNEVWLELSNNMK 81
>gi|119717430|ref|YP_924395.1| putative transmembrane protein [Nocardioides sp. JS614]
gi|119538091|gb|ABL82708.1| putative transmembrane protein [Nocardioides sp. JS614]
Length = 330
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 70/252 (27%), Positives = 122/252 (48%), Gaps = 30/252 (11%)
Query: 84 KPVVRIVMSKDIKPKDYVSLFSKVHKVAYIMAQPVDSFEMNTYKNIESYRNRFEDSYRYL 143
+PV RIV + P Y ++H +Y+M + +DS + + YRNR
Sbjct: 67 RPVARIVFQRGAGPAHYTRAVRRLHDDSYLMGEILDSTAVRR-TTVREYRNRTRAFVHRF 125
Query: 144 KDYVDIWEIGNEVNGEEWIKENPKLTAKKIYSAYKFIKSKNGITAL----TPYYFPPEEN 199
+D++EIGNE+NGE W+ P+ K+ +AY +K + L T Y+P
Sbjct: 126 GSRLDLYEIGNELNGE-WLGR-PRSINAKVAAAYDVVKGEYADLGLRSVVTLNYWP--SR 181
Query: 200 EISMENW-----LKKYIPVDMKNGLDYVFISYYEDD-NDGFQP---KWKNIFINLEKIFP 250
+ +W + +P +++G+D V +S+YE + P ++ + +L +IFP
Sbjct: 182 DCYAHDWEATLPFARQLPRRVRHGVDLVLLSFYETACSPRAHPSAGQFASTLRSLGEIFP 241
Query: 251 NSKLGIGECG------NTSQNATKESKIKMINHYYSMPKYTAN-----YVGGYFWWYWVQ 299
++++GIGE G ++ T K ++ Y M A+ +VGGYFWWY+
Sbjct: 242 DAQVGIGELGAQGRADGLPRDPTSAEKERIARRYIGMHDRLADAVGPRFVGGYFWWYYAT 301
Query: 300 DCVPY-KNNEVW 310
D VP+ + + +W
Sbjct: 302 DAVPWDRADSLW 313
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.320 0.138 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,280,802,879
Number of Sequences: 5470121
Number of extensions: 57336689
Number of successful extensions: 197402
Number of sequences better than 1.0e-05: 17
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 197341
Number of HSP's gapped (non-prelim): 17
length of query: 319
length of database: 1,894,087,724
effective HSP length: 133
effective length of query: 186
effective length of database: 1,166,561,631
effective search space: 216980463366
effective search space used: 216980463366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)