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UGID:1370664     UniGene Hs.534350     Homo sapiens (human)   SMARCB1 Order cDNA clone, Links
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 (SMARCB1)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
XP_001084370.1 PREDICTED: similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 isoform 1 M. mulatta 100.0 393
XP_001169668.1 PREDICTED: hypothetical protein isoform 2 P. troglodytes 100.0 393
NP_035548.1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 M. musculus 100.0 384
NP_003064.2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 isoform a H. sapiens 100.0 384
XP_848814.1 PREDICTED: similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 isoform 2 C. lupus familiaris 100.0 384
XP_001929472.1 PREDICTED: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 isoform 1 S. scrofa 100.0 384
NP_001035647.1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 isoform a B. taurus 100.0 384
NP_001020899.1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 R. norvegicus 100.0 375
NP_001085508.1 MGC80271 protein X. laevis 99.2 377
NP_001007297.1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1a D. rerio 98.7 372
NP_730935.1 Snf5-related 1 CG1064-PA D. melanogaster 76.0 369
NP_497890.1 hypothetical protein R07E5.3 C. elegans 61.5 377

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; uncharacterized tissue; placenta; lymph; lung; eye; mixed; embryonic tissue; vascular; esophagus; intestine; larynx; mammary gland; mouth; uterus; testis; prostate; blood; pancreas; kidney; thymus; cervix; adrenal gland; nerve; spleen; bone marrow; thyroid; bladder; stomach; ovary; liver; lymph node; bone; amniotic fluid; muscle; heart; salivary gland; skin; connective tissue; tonsil; epididymis; ascites; ganglia
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 22
Map position: 22q11.23|22q11
UniSTS entry: Chr 22 A006E25
UniSTS entry: Chr 22 G20745
UniSTS entry: (n/a)
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (36)

AJ011737.1 Homo sapiens mRNA for integrase interactor 1a protein (INI1A) P
AJ011738.1 Homo sapiens mRNA for integrase interactor 1b protein (INI1B) P
AY207471.1 Homo sapiens integrase interactor 1 protein isoform E (SMARCB1) mRNA, partial cds; alternatively spliced P
AY207470.1 Homo sapiens integrase interactor 1 protein isoform D (SMARCB1) mRNA, partial cds; alternatively spliced P
NM_003073.3 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 (SMARCB1), transcript variant 1, mRNA PA
AY562997.1 Homo sapiens SWI/SNF-related matrix-associated protein (SMARCB1) mRNA, partial cds, alternatively spliced P
CR456581.1 Homo sapiens SMARCB1 full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.SMARCB1) P
CR626732.1 full-length cDNA clone CS0DA005YC17 of Neuroblastoma of Homo sapiens (human) P
CR625707.1 full-length cDNA clone CS0DA011YE11 of Neuroblastoma of Homo sapiens (human) P
CR625181.1 full-length cDNA clone CS0DI071YB16 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR624865.1 full-length cDNA clone CS0DI016YN24 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR621760.1 full-length cDNA clone CS0DI030YN10 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR621090.1 full-length cDNA clone CS0DD001YJ18 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) P
CR621083.1 full-length cDNA clone CS0DI057YI07 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR620956.1 full-length cDNA clone CS0DF004YC19 of Fetal brain of Homo sapiens (human) P
CR619411.1 full-length cDNA clone CS0DI042YG07 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR619336.1 full-length cDNA clone CS0DI030YM09 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR617530.1 full-length cDNA clone CS0DG001YP09 of B cells (Ramos cell line) of Homo sapiens (human) P
CR601509.1 full-length cDNA clone CS0DI080YF20 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR600940.1 full-length cDNA clone CS0DI022YN22 of Placenta Cot 25-normalized of Homo sapiens (human) P
CR600743.1 full-length cDNA clone CS0DE008YC21 of Placenta of Homo sapiens (human) P
CR599485.1 full-length cDNA clone CS0DC029YF01 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) P
CR595672.1 full-length cDNA clone CS0DB003YC16 of Neuroblastoma Cot 10-normalized of Homo sapiens (human) P
CR594771.1 full-length cDNA clone CS0DF006YK20 of Fetal brain of Homo sapiens (human) P
CR590517.1 full-length cDNA clone CS0DB001YE08 of Neuroblastoma Cot 10-normalized of Homo sapiens (human) P
CR590397.1 full-length cDNA clone CS0DC023YL08 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) P
NM_001007468.1 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 (SMARCB1), transcript variant 2, mRNA PA
AB017523.1 Homo sapiens Ini1 mRNA, complete cds P
AK021419.1 Homo sapiens cDNA FLJ11357 fis, clone HEMBA1000201, highly similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily Bmember 1 P
AK024025.1 Homo sapiens cDNA FLJ13963 fis, clone Y79AA1001299, highly similar to Homo sapiens mRNA for integrase interactor 1b protein (INI1B) P
BC117114.1 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, mRNA (cDNA clone MGC:150723 IMAGE:40125665), complete cds P
AK299411.1 Homo sapiens cDNA FLJ58881 complete cds, highly similar to SWI/SNF-related matrix-associatedactin-dependent regulator of chromatin subfamily B member 1 P
AK303620.1 Homo sapiens cDNA FLJ57037 complete cds, highly similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 P
AL389881.1 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 152038 PA
AL389878.1 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1160430 PA
BC143667.1 Homo sapiens SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, mRNA (cDNA clone MGC:177198 IMAGE:9052181), complete cds P

EST sequences (10 of 565) [Show all sequences]

AA992555.1 Clone IMAGE:1623905 embryonic tissue 3' read A
AI022260.1 Clone IMAGE:1651465 skin 3' read A
AI051427.1 Clone IMAGE:1659038 embryonic tissue 3' read A
AI075165.1 Clone IMAGE:1672917 mixed 3' read A
BX112404.1 Clone IMAGp998P22113_;_IMAGE:121605 mixed P
AI219922.1 Clone IMAGE:1841277 mixed 3' read A
AI219942.1 Clone IMAGE:1841301 mixed 3' read A
CB159362.1 Clone L18POOL1n1-30-F10 liver 5' read P
CB161660.1 Clone L18POOL1n1-48-D11 liver 5' read P
CB116236.1 Clone L6ChoCK0-15-H04 liver 5' read


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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