BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TF1698
(92 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156107067|gb|EDO08812.1| hypothetical protein BACOVA_046... 81 2e-14
gi|150010084|ref|YP_001304827.1| mobilization protein BmgB ... 73 5e-12
gi|34540638|ref|NP_905117.1| mobilization protein [Porphyro... 64 3e-09
gi|60682752|ref|YP_212896.1| mobilization protein [Bacteroi... 64 4e-09
gi|19068108|gb|AAL29919.1| mobilization protein BmgB [Bacte... 62 8e-09
gi|154489827|ref|ZP_02030088.1| hypothetical protein PARMER... 61 2e-08
gi|29350029|ref|NP_813532.1| mobilization protein BmgB [Bac... 59 9e-08
gi|156107807|gb|EDO09552.1| hypothetical protein BACOVA_054... 56 7e-07
>gi|156107067|gb|EDO08812.1| hypothetical protein BACOVA_04668 [Bacteroides ovatus ATCC 8483]
Length = 129
Score = 80.9 bits (198), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/88 (50%), Positives = 62/88 (70%)
Query: 1 MATEEFYSLKAKARLAGITRSEYIRRCIAASIVRQRLSSELMSHLRQLSGMANNVNQIAH 60
MATE++Y LK+KA+ AG++ SE+IR CI V++RLS E +R+L GMANN+NQ+A
Sbjct: 40 MATEDYYLLKSKAKSAGVSASEFIRDCIKEGGVKERLSKEHGDLIRKLCGMANNLNQLAR 99
Query: 61 KANAMGYARVYQDNLVMTERLDNIIKRI 88
KANA GYA V+ + +DN++ RI
Sbjct: 100 KANAEGYASVFVTCRALMIEIDNLVNRI 127
>gi|150010084|ref|YP_001304827.1| mobilization protein BmgB [Parabacteroides distasonis ATCC 8503]
gi|149938508|gb|ABR45205.1| mobilization protein BmgB [Parabacteroides distasonis ATCC 8503]
Length = 118
Score = 73.2 bits (178), Expect = 5e-12, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 56/88 (63%)
Query: 1 MATEEFYSLKAKARLAGITRSEYIRRCIAASIVRQRLSSELMSHLRQLSGMANNVNQIAH 60
MAT ++Y L +A AG++ SEY+R C V++RLS E ++RQL GMANN+NQ+AH
Sbjct: 29 MATADYYRLLTRAHEAGVSPSEYMRGCFRNGHVKERLSEEHAGYIRQLCGMANNLNQLAH 88
Query: 61 KANAMGYARVYQDNLVMTERLDNIIKRI 88
KANA G+ D V R+ ++ +I
Sbjct: 89 KANAGGFHDERWDCKVAVARIHELLTKI 116
>gi|34540638|ref|NP_905117.1| mobilization protein [Porphyromonas gingivalis W83]
gi|34396952|gb|AAQ66016.1| mobilization protein [Porphyromonas gingivalis W83]
Length = 117
Score = 63.5 bits (153), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/70 (44%), Positives = 49/70 (70%)
Query: 1 MATEEFYSLKAKARLAGITRSEYIRRCIAASIVRQRLSSELMSHLRQLSGMANNVNQIAH 60
+ T E+++LK+KA AG+ ++EY+R I+ ++ R++ E M +R LSGMANN+NQIAH
Sbjct: 28 LNTMEYFTLKSKASEAGVNKNEYLRSLISEGQIKARITVEQMKEIRLLSGMANNINQIAH 87
Query: 61 KANAMGYARV 70
+ N G + V
Sbjct: 88 RLNTFGVSTV 97
>gi|60682752|ref|YP_212896.1| mobilization protein [Bacteroides fragilis NCTC 9343]
gi|60494186|emb|CAH08979.1| mobilization protein [Bacteroides fragilis NCTC 9343]
Length = 127
Score = 63.5 bits (153), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 59/87 (67%)
Query: 5 EFYSLKAKARLAGITRSEYIRRCIAASIVRQRLSSELMSHLRQLSGMANNVNQIAHKANA 64
++Y++K +A +G+ SEY+R+ I ++ V RL+ + +R+L+G ANN+NQ+AH+ANA
Sbjct: 32 QYYAIKKRAGESGLPISEYVRQAIISTEVTPRLNKQDADSIRKLAGEANNLNQLAHRANA 91
Query: 65 MGYARVYQDNLVMTERLDNIIKRIEDD 91
G+A V + + + R+ II ++ DD
Sbjct: 92 GGFALVAVELVKLKNRIIEIINQLSDD 118
>gi|19068108|gb|AAL29919.1| mobilization protein BmgB [Bacteroides fragilis]
Length = 127
Score = 62.4 bits (150), Expect = 8e-09, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 59/87 (67%)
Query: 5 EFYSLKAKARLAGITRSEYIRRCIAASIVRQRLSSELMSHLRQLSGMANNVNQIAHKANA 64
++Y+++ +A AG+ SEY+R+ + ++ V RL+ + +R+L+G ANN+NQ+AH+ANA
Sbjct: 32 QYYAIRKRAGEAGLRVSEYVRQAVVSAEVIPRLNRQDADTIRKLAGEANNINQLAHRANA 91
Query: 65 MGYARVYQDNLVMTERLDNIIKRIEDD 91
G+A V + + + R+ II ++ DD
Sbjct: 92 GGFALVAVELVKLKNRIVEIINQLSDD 118
>gi|154489827|ref|ZP_02030088.1| hypothetical protein PARMER_00055 [Parabacteroides merdae ATCC
43184]
gi|154089269|gb|EDN88313.1| hypothetical protein PARMER_00055 [Parabacteroides merdae ATCC
43184]
Length = 127
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 58/87 (66%)
Query: 5 EFYSLKAKARLAGITRSEYIRRCIAASIVRQRLSSELMSHLRQLSGMANNVNQIAHKANA 64
++Y+++ +A AG+ SEY+R+ + ++ V RL+ + +R+L G ANN+NQ+AH+ANA
Sbjct: 32 QYYAIRKRAGEAGVRISEYVRQAVISAEVIPRLNRQDADAIRKLVGEANNINQLAHRANA 91
Query: 65 MGYARVYQDNLVMTERLDNIIKRIEDD 91
G+A V + + + +R+ II + DD
Sbjct: 92 GGFALVAVELVKLKDRIVEIINHLSDD 118
>gi|29350029|ref|NP_813532.1| mobilization protein BmgB [Bacteroides thetaiotaomicron VPI-5482]
gi|29341941|gb|AAO79726.1| mobilization protein BmgB [Bacteroides thetaiotaomicron VPI-5482]
Length = 122
Score = 58.9 bits (141), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 1 MATE-EFYSLKAKARLAGITRSEYIRRCIAASIVRQRLSSELMSHLRQLSGMANNVNQIA 59
M TE ++ +++KA AG++ +E+ + V QR+S E++S +R LSG+ANNVNQIA
Sbjct: 25 MFTENDYIYIQSKAEQAGLSVNEFCHQAAMDCQVCQRISPEMVSAIRDLSGIANNVNQIA 84
Query: 60 HKANAMGYARVYQDNLVMTERLDNIIKRIEDDC 92
H+ + G V Q + ++ II +++++C
Sbjct: 85 HQMHTYGLEAVKQQCFSIISEVNRIITQVKNNC 117
>gi|156107807|gb|EDO09552.1| hypothetical protein BACOVA_05415 [Bacteroides ovatus ATCC 8483]
Length = 122
Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 1 MATE-EFYSLKAKARLAGITRSEYIRRCIAASIVRQRLSSELMSHLRQLSGMANNVNQIA 59
M TE ++ +++KA+ AG++ +E+ + V QR+S E++S +R LSG+ANNVNQIA
Sbjct: 25 MFTENDYIYIQSKAQQAGLSVNEFCHQAAMGCEVGQRISPEMVSAIRDLSGIANNVNQIA 84
Query: 60 HKANAMGYARVYQDNLVMTERLDNIIKRIEDD 91
H+ + G V Q + + II +++++
Sbjct: 85 HQMHIYGLEAVKQQCFSIISEVSRIITQVKNN 116
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.322 0.131 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 259,535,730
Number of Sequences: 5470121
Number of extensions: 7223801
Number of successful extensions: 22448
Number of sequences better than 1.0e-05: 11
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22437
Number of HSP's gapped (non-prelim): 11
length of query: 92
length of database: 1,894,087,724
effective HSP length: 62
effective length of query: 30
effective length of database: 1,554,940,222
effective search space: 46648206660
effective search space used: 46648206660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 124 (52.4 bits)