R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|9758068|dbj|BAB08647.1| (AB009048) frnE protein-like [Arabidopsis thaliana]
Length = 217
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | 217
0 50 100 150 200
Plus Strand HSPs:
Score = 274 (96.5 bits), Expect = 6.9e-23, P = 6.9e-23
Identities = 53/78 (67%), Positives = 62/78 (79%), Frame = +1
Query: 13 GKYIGDHKFLLESAAKVGIEGAEEFLKDPNNGLKEVEEELKTYSGNISGVPYYVINGNHK 192
GK+IGD +FL+E+A KVGIEGAEEFL DPNNG+ EV+EEL YS NI+GVP Y ING K
Sbjct: 139 GKFIGDREFLVETANKVGIEGAEEFLSDPNNGVTEVKEELAKYSKNITGVPNYTINGKVK 198
Query: 193 LSGGQPPEVFLRAFQVAT 246
LSG QPPE F AF+ A+
Sbjct: 199 LSGAQPPETFQSAFKAAS 216
>gi|10174520|dbj|BAB05621.1| (AP001513) BH1902~unknown conserved protein in
others [Bacillus halodurans]
Length = 95
Frame 1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 95
0 20 40 60 80
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 20/38 (52%), Positives = 26/38 (68%), Frame = +1
Query: 124 EELKTYSGNISGVPYYVINGNHKLSGGQPPEVFLRAFQ 237
EE K S + GVPY+VIN + LSG QP +VF+RA +
Sbjct: 24 EEAKAQSLQVRGVPYFVINDKYALSGAQPTDVFVRALK 61
>gi|3978168|gb|AAD03806.1| (AF047427) unknown [Mannheimia haemolytica]
Length = 94
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | | 94
0 20 40 60 80
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.0010, P = 0.0010
Identities = 24/70 (34%), Positives = 37/70 (52%), Frame = +1
Query: 40 LLESAAKVGIEGAE--EFLKDPNNGLKEVEEELKTYSGNISGVPYYVINGNHKLSGGQPP 213
L+ A +G+E E + L + G + E+E + I VP++VIN +SG QPP
Sbjct: 22 LISLALDIGLERDEIAQLLTGDDFGHEVREDERVAHKYGIHSVPFFVINEKLGVSGAQPP 81
Query: 214 EVFLRAFQVA 243
E+ L A + A
Sbjct: 82 EILLDAIKQA 91
>gi|7471903|pir||E75491 frnE protein - Deinococcus radiodurans (strain R1)
>gi|6458362|gb|AAF10238.1|AE001923_5 (AE001923) frnE protein
[Deinococcus radiodurans]
Length = 252
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | || 252
0 50 100 150 200 250
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.037, P = 0.036
Identities = 24/75 (32%), Positives = 40/75 (53%), Frame = +1
Query: 13 GKYIGDHKFLLESAAKVGIE-GAEEFLKDPNNGLKEVE-EELKTYSGNISGVPYYVINGN 186
G+ + D L + AA+VG++ GA + + V +E + I+GVP++V+ G
Sbjct: 140 GQNVNDLDTLQKLAAEVGLDAGAARAALEAGTYAQAVRYDEAQAQQLGITGVPFFVLGGK 199
Query: 187 HKLSGGQPPEVFLRA 231
+ +SG Q PE L A
Sbjct: 200 YGVSGAQAPETLLGA 214
>gi|3170570|gb|AAC18100.1| (AF058302) FrnE [Streptomyces roseofulvus]
Length = 216
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.20, P = 0.18
Identities = 24/71 (33%), Positives = 35/71 (49%), Frame = +1
Query: 13 GKYIGDHKFLLESAAKVGIEGA---EEFLKDPNNGLKEVEEELKTYSGNISGVPYYVING 183
G +GDH LL A + G++ A E D + +E+ G + GVP +VI G
Sbjct: 132 GVSVGDHPTLLALAEEAGLDAAAAAEVLAGDAHAEDVRADEDRAARLG-VGGVPAFVIGG 190
Query: 184 NHKLSGGQPPEV 219
+SG QP E+
Sbjct: 191 RWSVSGAQPAEL 202
>gi|1353122|sp|P34655|YOT0_CAEEL HYPOTHETICAL 8.7 KD PROTEIN ZK632.10 IN
CHROMOSOME III >gi|3881704|emb|CAA80190.1| (Z22181) contains
similarity to Pfam domain: PF01679 (Uncharacterized protein
family), Score=99.2, E-value=2.7e-26, N=1 [Caenorhabditis elegans]
Length = 80
Frame -2 hits (HSPs): _______________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 80
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL01309: Uncharacterized protein family 30..50
Entrez Transmembrane region: POTENTIAL. 4..24
Entrez Transmembrane region: POTENTIAL. 32..52
PFAM UPF0057: Uncharacterized protein family 2..52
PRODOM PD004756: 4..50
PRODOM PD051035: YOT0_CAEEL 52..79
__________________
Minus Strand HSPs:
Score = 61 (21.5 bits), Expect = 4.4, P = 0.99
Identities = 12/39 (30%), Positives = 26/39 (66%), Frame = -2
Query: 132 ELLLNLLQTIVGVLKKLFCSFYTNLCSRFQKKLMVTNVF 16
+LL+N+L T +G++ + ++Y LC ++K +V N++
Sbjct: 27 DLLINILLTCLGIIPGIIHAWYIILC---KEKTVVQNIY 62
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.353 0.156 0.616
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.364 0.165 0.556
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.331 0.149 0.471
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.354 0.160 0.562
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.360 0.164 0.568
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.355 0.160 0.566
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 139 139 10. 73 3 12 22 0.12 33
30 0.10 36
+2 0 140 140 10. 73 3 12 22 0.12 33
30 0.11 36
+1 0 140 140 10. 73 3 12 22 0.12 33
30 0.11 36
-1 0 140 140 10. 73 3 12 22 0.12 33
30 0.11 36
-2 0 140 140 10. 73 3 12 22 0.12 33
30 0.11 36
-3 0 139 139 10. 73 3 12 22 0.12 33
30 0.10 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 6
No. of states in DFA: 591 (58 KB)
Total size of DFA: 176 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 137.39u 0.85s 138.24t Elapsed: 00:00:36
Total cpu time: 137.41u 0.87s 138.28t Elapsed: 00:00:36
Start: Fri Jan 18 12:02:07 2002 End: Fri Jan 18 12:02:43 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000