NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs356006          
refSNP ID: rs356006
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:79/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
NM_152721.3:c.66+19362A>G
NT_025028.13:g.14878754A>G
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss2331234 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs356006 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss451983KWOK|OVLP-000621-380138fwd/TA/Gatacaggaagcccatgaagttaaggaagctagataacacaagcaggctcagatctgttac06/30/0010/10/0379Genomic99 %
ss500285SC_JCM|AC015673.3_118977fwd/TA/Gatacaggaagcccatgaagttaaggaagctagataacacaagcaggctcagatctgttac07/12/0010/10/0387Genomicunknown
ss1148005KWOK|OVLP-000804-446393fwd/TA/Gatacaggaagcccatgaagttaaggaagctagataacacaagcaggctcagatctgttac09/02/0010/10/0386Genomic99 %
ss2033261KWOK|OVLP-000925-706414fwd/TA/Gatacaggaagcccatgaagttaaggaagctagataacacaagcaggctcagatctgttac10/06/0010/10/0387Genomic99 %
ss2331234TSC-CSHL|TSC0745162fwd/TA/Gatacaggaagcccatgaagttaaggaagctagataacacaagcaggctcagatctgttac10/20/0010/10/0388Genomic95 %
ss5754385SC_JCM|NT_033907.2_10643833fwd/TA/Gatacaggaagcccatgaagttaaggaagctagataacacaagcaggctcagatctgttac01/10/0310/10/03111Genomicunknown
ss15840412SC_SNP|NT_025028.13_14878754fwd/TA/Gatacaggaagcccatgaagttaaggaagctagataacacaagcaggctcagatctgttac11/17/0311/22/03120Genomicunknown
ss16766190CSHL-HAPMAP|CSHL-HuAA-200402.chr18.NT_025028.13_14878754fwd/TA/Gatacaggaagcccatgaagttaaggaagctagataacacaagcaggctcagatctgttac02/17/0403/04/04120Genomicunknown
ss21463315SSAHASNP|WGSA-200403-chr18.chr18.NT_025028.13_14878754fwd/TA/Gatacaggaagcccatgaagttaaggaagctagataacacaagcaggctcagatctgttac03/20/0403/20/04121Genomicunknown
ss83342063HGSV|Cor18555_SNV_20070510.chr18_65238888fwd/TA/Gatacaggaagcccatgaagttaaggaagctagataacacaagcaggctcagatctgttac11/27/0712/04/07130Genomicunknown
ss85699531HGSV|Cor18517_SNV_20070510.chr18_65238888fwd/TA/Gatacaggaagcccatgaagttaaggaagctagataacacaagcaggctcagatctgttac12/06/0712/10/07130Genomicunknown
ss90841670BCMHGSC_JDW|JWB-1120211fwd/TA/Gatacaggaagcccatgaagttaaggaagctagataacacaagcaggctcagatctgttac02/26/0803/01/08129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs356006|allelePos=31|totalLen=596|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=130
 ATACAGGAAG CCCATGAAGT TAAGGAAGCT
 R
 AGATAACACA AGCAGGCTCA GATCTGTTAC ACTGATTTCT AGCGCCTTCT CAGAACACCT
 GTTTCAACCA CTGCACACAA TTTCATGACA GTGTATTCCA CCCTTACCCC AGAGGAGGTT
 GGCGTATCTC TGAGGATGCC GATTGGTGTG CCATCCTAGA CTAGGACATG ATACCCTTTT
 TCTATATAAT CTACAGTAAT TCTAAGGCTC CTATTTTATA TAGTTTTTCC CCAATTTAAT
 TGGAACCATT GGCTGTATCT ATTTCAATTC ACAGTCCCTG ATGAGTGCCT CAACCAATCT
 CAAAGGTAAT GTCACTAACG ATTCCTCAGA TCTCTTGATC ACTTTCCCTG TTATGTGTGC
 AGTCTACCAT CTTTGAAACC CTAAGATGCA TGCATCACTT TAAATGTACT CAAAGATTAA
 GACAGGTTCT CAATTGTACT TATTTTAAAA CCTGAAAAAC CTTTACAAAA ACATTCTATA
 TGCAGCAGTA TGATTCTGAA ATGTCTTTTC TTCCATCTCA TTGATGTTGG TTTTGATAAT
 GTGATTTTAT GACTTAGCTG GAGCT

  GeneView back to top
GeneView via analysis of contig annotation: DOK6 docking protein 6
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_025028->NM_152721
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_025028->NM_152721->NP_68993414878754forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs356006 maps exactly once on NCBI human chromosome 18
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
18NW_001838469.11489066263807313plusGalt_assembly_8HuRefHuRefview30
18NW_927129.1196908763935529plusGalt_assembly_1CeleraCeleraview30
18NT_025028.131487875465238888plusAref_assemblyreferencereferenceview30

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_033907.2 AC026585 AC026585.2
dbSNP Blast Analysis

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceG/G
HWPG
ss2331234HapMap-CEUEuropean 108IG 1.000 1.000
HapMap-HCBAsian 82IG 1.000 1.000
HapMap-JPTAsian 88IG 1.000 1.000
HapMap-YRISub-Saharan African 112IG 1.000 1.000

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
27021000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterwithHapMapFreqUNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .