prokMSA_id: 11380
prokMSAname: Atopobium minutum str. NCFB 2751
GenBank ACCESSION: X67148.1
GenBank GI: 38862
Pubmed/Medline:
RDP_id: S000004268
NCBI_tax_id: 1381
Study_id: 16740
Chimera Test Result
bellerophon=checked, not chimeric
bel3_div_ratio=
G2_chip_tax_string=Bacteria; Actinobacteria; Actinobacteria; Coriobacteriales; Coriobacteriaceae; sf_1; otu_1383
Hugenholtz_tax_string=Bacteria; Actinobacteria; Coriobacteridae; Atopobiales
Ludwig_tax_string=prokaryotes; Bacteria; Actinobacteria; Choriobacteraceae - Rubrobacteraceae; Coriobacteriaceae; Atopobium - Olsenella; Atopobium
Pace_tax_string=Bacteria; Actinobacteria; Coriobacteridae; Atopobium
RDP_tax_string=Bacteria; Actinobacteria; Actinobacteria; Coriobacteridae; Coriobacteriales; Coriobacterineae; Coriobacteriaceae; Atopobium
ncbi_tax_string=Bacteria; Actinobacteria; Coriobacteridae; Coriobacteriales; Coriobacterineae; Coriobacteriaceae; Atopobium
authors(alphabetically)=Collins,M.D., Reading,S., Wallbanks,S.
blast_perc_ident_to_template=80.3
chi_checked=1
contact_info=S. Reading, AFRC Inst of Food Research, Reading Laboratory, Earley Gate, Whiteknights Road, Reading Berkshire RG6 2EF, UK
create_date=16-NOV-1992
decision=named_isolate
description=A.minutum 16S rRNA
gold_id=Gi00044_1of1
journal=FEMS Microbiol. Lett. 95, 235-240 (1992)
longest_insertion=2
ncbi_acc=X67148
non_ACGT_count=2
non_ACGT_percent=0.1386
organism=Atopobium minutum
perc_ident_to_invariant_core=98.4
prokMSA_id=11380
prokMSAname=Atopobium minutum str. NCFB 2751
small_gap_intrusions=2
source=Atopobium minutum
span_aligned=9..1454
strain=NCFB 2751
submit_date=01-JUL-1992
template=104024
timestamp=20060323132325
title=Comparative sequence analyses of the 16S rRNA genes of Lactobacillus minutus, Lactobacillus rimae and Streptococcus parvulus: Proposal for the creation of a new genus Atopobium
unaligned_length=1446
update_date=16-NOV-1992
>Atopobium minutum str. NCFB 2751 prokMSA_id:11380 X67148.1
AGAGTTCGANCCTGGCTCAGGATGAACGCTGGCGGCGCGCCTAACACATG
CAAGTCGAACGATTAAAGCATCTTTTAGATGTGTATAAAGTGGCGAACGG
CTGAGTAACACGTGGGCAACCTGCCCTTTTCTTTGGGATAGCTACGGGAA
ACCGTGGGTAATACCGAATATTTCTTGAGTGTCGCATGGCACACAAGACA
AAGCGTCTAGCGGAAAAGGATGGGCCCGCGGCCTGTTAGCTTGTTGGTGG
GGTAATGGCCTACCAAGGCAGTTATGGGTAGCCGGGTTGAGAGACCGACC
GGCCAGATTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGT
GGGGAATCTTGCGCAATGGGGGAAACCCTGACGCAGCGACGCCGCGTGCG
GGATGAAGGCCTTCGGGTTGTAAACCGCTTTCAGCAGGGACGAGGCCGCA
AGGTGACGGTACCTGCAGAAGAAGCTCCGGCTAAATACGTGCCAGCAGCC
GCGGTAATACGTATGGAGCAAGCGTTATCCGGATTCATTGGGCGTAAAGC
GCTCGTAGGCGGTCTGTTAGGTCGGTAAGTTAAATCCGGGGGCTCAACCC
CCGTCCGCTTCCGATACCGGCAGACTTGAGTTTGGTAGGGGAAGGTGGAA
TTCCTAGTGTAGCGGTGGAATGCGCAGATATTAGGAAGAACACCGGTGGC
GAAGGCGGCCTTCTGGGCCATAACTGACGCTGAGGAGCGAAAGCTAGGGG
AGCGAACAGGATTAGATACCCTGGTAGTCCTAGCCGTAAACGATGGACAC
TAGGTGTGGGGGGATGTACCTTCCGTGCCGCAGCTAACGCATTAAGTGTC
CCGCCTGGGGAGTACGACCGCAAGGTTAAAACTCAAAGGAATTGACGGGG
GCCCGCACAAGCAGCGGAGCATGTGGCTTAATTCGAAGCAACGCGAAGAA
CCTTACCAGGGCTTGACATTTAGGTGAAGCGGCGGAAACGTCGTGGCCGA
AAGGAGCCTAAACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGA
TGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCGCATGTTGCCAGC
AGGTCAAGCTGGGCACCCGTGCGAGACCGCCGGCGTCAAGCCGGAGGAAG
GTGGGGACGACGTCAAGTCATCATGCCCCTTATGTCCTGGGCTGCACACG
TGCTACAATGGTCGGCACAGCGGGAAGCAAACTTGCGAAAGTAAGCCAAT
CCCTTAAAGCCGGCCCCAGTTCGGATTGGAGGCTGCAACCCGCCTCCATG
AAGTCGGAGTTGCTAGTAATCGCGGATCAGCACGCCGCGGTGAATGCGTT
CCCGGGCCTTGTACACACCGCCCGTCACACCACCCGAGTCTTTNGCACCC
GAAGTCGTCGGCCTAACCCGCAAGGGAGGGAGGCGCCGAAGTGTGG
>Atopobium minutum str. NCFB 2751 prokMSA_id:11380 X67148.1
..................................................
..................................................
........AGAGTTC-GA--N-CC-T-G-GCTC-AG-GA-TGAA-C-GC-
-TGG-C--G-GC-G-CG--C----C-T--AACACA-T-GC-A-AGT-CGA
-A-CG----------A-TTA------------------------------
----AAG-C-AT--------------------------------------
--------------CTT-T-------------------------------
--------------------------------------------------
-TAG-ATGT----------------G-TA--T--AA-----AG-T-GG-C
-GA-A--C-------------GGC-TGAGT-A--AC-AC-G-T-G-GG--
-CAA--C-CT-G--C-C-CTT--TT-C-----------------------
-------------------------------------------T-TT---
-GGG-AT-AG-CTA-------------------------C-G-G------
-----------------GAA-A---CCG-TGG-GTAA-TA---CC-G--A
-AT-A---------------------------------T-TT-C-T--T-
-G----------------AGT---GT-C----------------------
--------------------------------------------------
-----------------------------------------------G-C
A-T-----------------------------------------------
--------------------------------------------------
-------------------------------------G-G-C--A-C---
------------A--C-A-A-GAC--------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---------------------------AAAG-CG-T--------------
--------------------------------------------------
--------------------------------------------------
----------------------CTA-------------------------
--------------------------------------------------
--------------------------------------------------
-------G---C-G--------------G----A-A---A-AG-G---AT
---G-G-----G-CCC-GCG--G-CCT--G------TT--A--G-CT-T-
---G---TTGG-T-G-GG-G-T----AAT-GG-C-C-T-ACCA--A-GG-
C-A--G-TT-A------------TGG-G-T------AG-CC-G-G-GTT-
G-AG----A--GA-CC--G-AC-C-GG-CCAG-A-TTGGG--A-C-TG-A
-GA-C-AC-G-G-CCCAGA-CTCC-TAC-G--G-G-A-G-GC-A-GC-A-
G-TG---GG-G-A-ATC-TTGCG-C-AA-T-GG--GG-GA-A----A-C-
CC-T-GA-CG-CA-GCGA-CGCC-G-CG-T---G-C-G--G--GA-T-G-
-A--A-G-G-CC-----TT-CG---------G-G-T-T-G-T--A---AA
-C-CGC--------TT-TC-A-G--C-AGG----GA-C--G---AGGC--
------------------CGCAA-G-------------------------
--GT-GA-CG-GT-A-C-CT-G-CA-G---------AA-----------G
AAGC-TCC-GG-C-TAA---A--T-ACGT--GCCA--G-C---A--GCCG
---C-GG--TA-AT--AC---GT-AT-GGA-GCA-A-G-CG-TTAT-C-C
GG-AT-TC-A--T-T--GGGC-GTA----AA-GCGC-TC--G-TA-G-G-
C-G------------G--T-CT-G-T-T-AG----G-T-C-G---GTAAG
-TT-A-AA-TC--CG-GGG-G-----------------------------
---------------------------------------CT-C-AA----
--------------------------------------------------
-------------------CC-C-C-CG-TC-C------G-C-T-T-C--
------C--GA-T-A-C-C-G-GCA--G-A-C------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---------------------T-T-G-A-G-T-T-----T-GG--TA-G-
G------------G-GA-A-GG-T----GG--AATT-CCT-A-GT--GT-
A-GCG-GTGGAA-TG-CGC-AGAT-A-TT-A-GGA--AG-A-AC-A-CC-
GG--T--G--GC-GAA-G--G-C---G----G--C-C-TTCTG------G
-GC-CA--------------------------------------------
------------------TA-A-C-T--GA--CG-----CT-GA-GG--A
-G-CGA--AA-G-C--------------T-AGGG-GAG-C-G-AACA--G
G-ATTA-G-ATA-C-----CC-T-G-GTA-G-T----C-CT--A-G-CCG
-T-AAA--C-GATG-GA--CA-CT---------A-GG--T--G-T-GG-G
-GG-G--A------------------------------------------
-------------------------------------------TGTA-CC
-T------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---T--C-C-G-T-GC-C------GC--A----GC-TAA--CG-C-A-T-
-T--AA-GT--G----T-CCC-GCC-T-G-GG-GAG-TA---CGA-----
C-C--G-C-A-A-GGT-T--AAA-ACTC-AAA---------GGAA-TTG-
ACGGG-G-G-CCCG----C-A--C-A-A-GCA-GC-G--G--AG-CA-T-
-GT-GGC-TT-AATT-C-G-AAG-CAAC-G-CG-A-AG-A-A-CC-TT-A
-CC-AGGGC-TT-G-AC-A-T-T------------T-AGG-T-G------
-------A-AG-C-G-G--CG----GA-A-A-C--G-T-C--G-T-G-G-
---------CC-------------------------------------G-
-AA-A------------------------------------------GG-
------------AG-CCT---A--AA------------------------
---------------------------C-A-G-G-T-GGTG-CA-TGG-C
T--GTC-GTC-A-GC-TC---G-TG-TC-G--TGA-GA-TGT-T-GG-G-
TT-AA-GT-CCCGC-AA--------C-GAG-CGC-A-ACC-C-T-TG--T
C--G-CATG--T-T-G-C-C---AG-C-A--G--G---------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
----------------TCA-------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
-----------------------------AG---C----T-G--------
----G----G---C-A--CC---------------C-G-T-G-C-GA-G-
-AC-C-G-CCG--G-C----------------------------------
--G-T---CAA----------------------------------G-C-C
-G--G-A-GG-A--AGG-T--GGGG-A-CGAC-GTC--AAGT-C---ATC
-A-T-G-C-C-C-CTT----AT-G--TC-C-T-GG-GC-TG-CAC-ACGT
G-C--TA--CAATG---G-TCGG-C-A--C-AGC-GG-GA----------
--------------------------------------------------
--------------------------------------A-G-C-A-A--A
-CTTG-C--G---------------------------------------A
-AA-G-T-----------A--A-G-CC---A----------A--TCC-C-
-----T-T-AAAGC-CG-G-C-C-C-CAG-TTC--------GGA-T-TGG
AG-GC--T-GCAA-CC-C--------------------------------
--------------------------------------------------
---------------G-CCTCC-A-T-G-AA-G-TC-GGAGT-TG-C-TA
--G-TA-AT-C-G-C----GGA-TC-A-G-C-------AC--GCC-GC-G
-GT-G-AAT-GCGT-T-CCCGGGCCT-TGTA----CACACCG-CCC-GTC
-----A---CA--CCA-CC-CG-A--G---TCT-T-TN-GC-ACC--C-G
AA------G--T-CGT-CG-G-C-C-T-AA--CC----------------
---------------------------------------------C-GC-
AA------------------------------------------------
--------------------------------------------------
--GGG-A--GG-G--A---GG-CG---CC--GAA-G----T-G.......
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
..................................................
................................