Handout     NAR 2006 Paper     NAR 2002 Paper     FAQ     MIAME     Email GEO  
   NCBI > GEO > Accession Display Not logged in | Login
GEO help: Mouse over screen elements for information.
Scope:    Format:    Amount:   GEO accession:    Go
Sample GSM3089 Query DataSets for GSM3089
Status Public on Jul 01, 2003
Title Gastrointestinal Stroma Tumor: patient GIST-5, tumor tissue, 2nd repetition
Sample type RNA
 
Source Name Gastrointestinal Stroma Tumor
Organism(s) Homo sapiens
Extracted molecule total RNA
 
Description patientid=GIST-5
sex=f
age=81
birthyear=1915
stage=recurrence
type=GIST
tumorsite=stomach
survival_months=45
died=no
tumorsize.cm=17
CD34_expression=yes
SMA_expression=no
S100_expression=no
mitoses_in_10_hpf=2
mucosal_ulceration=no
metastases_or_recurrence=no
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice)
Keywords = Gastrointestinal Stroma Tumor from stomach
Lot batch = filter=36211243 reuse=3 date=28-Nov-2000
 
Submission date Dec 11, 2002
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL9
Series (1)
GSE112 Distinctive gene expression patterns in gastrointestinal stromal tumors identified with cDNA arrays

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-BKD_RAW

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 689010 466489 222521
2 276355 466489 -190134
3 496111 466489 29622
4 459595 466489 -6894
5 675378 466489 208889
6 6221980 466489 5755491
7 50561224 466489 50094735
8 407782 466489 -58707
9 335247 466489 -131242
10 355422 466489 -111067
11 551534 466489 85045
12 635380 466489 168891
13 42545768 466489 42079279
14 276811 466489 -189678
15 165280 466489 -301209
16 547421 466489 80932
17 414774 370881 43893
18 613829 370881 242948
19 288310 370881 -82571
20 452269 370881 81388

Total number of rows: 36865

Table truncated, full table size 979 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Section 508 |
NCBI Home NCBI Search NCBI SiteMap