R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|10178199|dbj|BAB11623.1| (AB016875) N-carbamyl-L-amino acid
amidohydrolase-like protein [Arabidopsis thaliana]
Length = 441
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 441
0 150 300
Plus Strand HSPs:
Score = 253 (89.1 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 56/90 (62%), Positives = 60/90 (66%), Frame = +2
Query: 65 AHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIXLEVXSFXSXEPXXFGICCXGSX 244
+HIDA PYSGKYDGVVGVLGA EAI VL RSGF P LE+ F S EP FGI C GS
Sbjct: 102 SHIDAIPYSGKYDGVVGVLGAIEAINVLKRSGFKPKRSLEIILFTSEEPTRFGISCLGSR 161
Query: 245 LLAGXXDLAYSLXTXX-DXQXXSFXHAAGS 331
LLAG +LA +L T D Q SF AA S
Sbjct: 162 LLAGSKELAEALKTTVVDGQNVSFIEAARS 191
>gi|10173375|dbj|BAB04480.1| (AP001509) N-carbamyl-L-amino acid amidohydrolase
[Bacillus halodurans]
Length = 414
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 414
0 150 300
Plus Strand HSPs:
Score = 129 (45.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/86 (32%), Positives = 46/86 (53%), Frame = +2
Query: 65 AHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIXLEVXSFXSXEPXXFGICCXGSX 244
+HID+ P+ G++DG +GVLGA EA+ + +G +E+ SF E FG GS
Sbjct: 86 SHIDSVPHGGRFDGTLGVLGAIEAVRTMKEAGIKLKHSIEIVSFTDEEGARFGAGFIGSK 145
Query: 245 LLAGXXDLAYSLXTXXDXQXXSFXHA 322
+AG +L + + D + ++ A
Sbjct: 146 GMAG--ELTETTFSLADDKGVTYREA 169
>gi|7473192|pir||F75429 N-carbamyl-L-amino acid amidohydrolase (EC 3.5.1.-)
DR1154 [similarity] - Deinococcus radiodurans (strain R1)
>gi|6458894|gb|AAF10728.1|AE001965_2 (AE001965) N-carbamyl-L-amino
acid amidohydrolase [Deinococcus radiodurans]
Length = 416
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 416
0 150 300
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.00017, P = 0.00017
Identities = 29/87 (33%), Positives = 41/87 (47%), Frame = +2
Query: 41 PGCRNS-ARAHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIXLEVXSFXSXEPXX 217
PG R +H+D P +G+YDG++GV+ A++ R P LEV F E
Sbjct: 74 PGARTLYIGSHLDTVPNAGRYDGIIGVVFGY-ALVEALRERELP-FHLEVLGFSEEEGVR 131
Query: 218 FGICCXGSXLLAGXXDLAYSLXTXXDXQ 301
+G+ GS L G D L T D +
Sbjct: 132 YGVSFIGSRALVGTAD---ELLTVSDRE 156
>gi|11350628|pir||C83591 N-carbamoyl-beta-alanine amidohydrolase PA0444
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9946302|gb|AAG03833.1|AE004481_9 (AE004481)
N-carbamoyl-beta-alanine amidohydrolase [Pseudomonas aeruginosa]
Length = 427
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 427
0 150 300
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.00022, P = 0.00022
Identities = 26/72 (36%), Positives = 33/72 (45%), Frame = +2
Query: 65 AHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIXLEVXSFXSXEPXXFGICCXGSX 244
+HID P GK+DG GV+ E I L G LEV + + E F C GS
Sbjct: 91 SHIDTQPTGGKFDGCFGVMAGLEVIRTLNDLGVETEAPLEVVVWTNEEGSRFAPCMMGSG 150
Query: 245 LLAGXXDLAYSL 280
+ AG L +L
Sbjct: 151 VFAGKFTLEETL 162
>gi|773414|gb|AAB05989.1| (U23751) beta galactosidase [Cloning vector
pBBR1MCS-2] >gi|833819|gb|AAB06689.1| (U25059) LacZ alpha peptide
[Cloning vector pBBR1MCS-3] >gi|833823|gb|AAB06692.1| (U25060) LacZ
alpha peptide [Cloning vector pBBR1MCS-4] >gi|833827|gb|AAB06695.1|
(U25061) LacZ alpha peptide [Cloning vector pBBR1MCS-5]
Length = 121
Frame -2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 121
0 50 100
Minus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.00031, P = 0.00031
Identities = 18/30 (60%), Positives = 21/30 (70%), Frame = -2
Query: 92 PSKV*HQCALVXNSCSPGDPLVXERPXPGW 3
PS+ +L+ NSCSPGDPLV ERP P W
Sbjct: 24 PSRSTVSISLISNSCSPGDPLVLERPPPRW 53
>gi|9294786|gb|AAF86670.1|AF178449_1 (AF178449) beta-galactosidase alpha
peptide [Integration vector pCD11PKS]
>gi|9294795|gb|AAF86676.1|AF178452_1 (AF178452) beta-galactosidase
alpha peptide [Integration vector pCD13PKS]
Length = 127
Frame -2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 127
0 50 100
Minus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.00031, P = 0.00031
Identities = 18/30 (60%), Positives = 21/30 (70%), Frame = -2
Query: 92 PSKV*HQCALVXNSCSPGDPLVXERPXPGW 3
PS+ +L+ NSCSPGDPLV ERP P W
Sbjct: 24 PSRSTVSISLISNSCSPGDPLVLERPPPRW 53
>gi|762925|emb|CAA59990.1| (X85998) elastin like protein [Drosophila
melanogaster]
Length = 110
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | | 110
0 20 40 60 80 100
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.00050, P = 0.00050
Identities = 23/41 (56%), Positives = 29/41 (70%), Frame = +2
Query: 2 SSPVXAALXLVDPPGCRNSAR----AHIDAXPYSG-KYDGV 109
S+ V AAL LVDPPGCRNSAR A++++ Y+G Y GV
Sbjct: 3 STAVAAALELVDPPGCRNSARDRQRANLNSQLYAGYPYPGV 43
>gi|7384996|gb|AAF61634.1| (AF153422) lacZ [Cloning vector pTG8]
Length = 197
Frame -2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 197
0 50 100 150
Minus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.00059, P = 0.00059
Identities = 18/30 (60%), Positives = 21/30 (70%), Frame = -2
Query: 92 PSKV*HQCALVXNSCSPGDPLVXERPXPGW 3
PS+ +L+ NSCSPGDPLV ERP P W
Sbjct: 27 PSRSTVSISLISNSCSPGDPLVLERPPPRW 56
>gi|560554|gb|AAB31222.1| (S71728) truncated protein [Saccharomyces cerevisiae]
Length = 33
Frame -2 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | 33
0 20
Minus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.00063, P = 0.00063
Identities = 16/22 (72%), Positives = 18/22 (81%), Frame = -2
Query: 68 ALVXNSCSPGDPLVXERPXPGW 3
+L+ NSCSPGDPLV ERP P W
Sbjct: 7 SLISNSCSPGDPLVLERPPPRW 28
>gi|560556|gb|AAB31223.1| (S71730) influenza virus hemagglutinin 5' epitope
tag=fusion protein {N-terminal, frame 1} [Saccharomyces
cerevisiae=yeast, YCpIF15,16,17 cloning vector, Peptide Plasmid
Synthetic Partial, 45 aa]
Length = 45
Frame -2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | 45
0 20 40
Minus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.00063, P = 0.00063
Identities = 16/22 (72%), Positives = 18/22 (81%), Frame = -2
Query: 68 ALVXNSCSPGDPLVXERPXPGW 3
+L+ NSCSPGDPLV ERP P W
Sbjct: 19 SLISNSCSPGDPLVLERPPPRW 40
>gi|7672255|emb|CAB89444.1| (AL354048) putative amino acid hydrolase
[Streptomyces coelicolor A3(2)]
Length = 405
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 405
0 150 300
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.0015, P = 0.0015
Identities = 22/64 (34%), Positives = 33/64 (51%), Frame = +2
Query: 65 AHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIXLEVXSFXSXEPXXFGICCXGSX 244
+H+D+ P G +DG +GV+ A A+ L G L + +F E FG+ C GS
Sbjct: 74 SHLDSVPDGGAFDGPLGVVSAFAALDELRGRGARFTRPLGIVNFGDEEGARFGLACVGSR 133
Query: 245 LLAG 256
L +G
Sbjct: 134 LTSG 137
>gi|4028979|emb|CAA06470.1| (AJ005323) glutamate permease [synthetic construct]
>gi|4028985|emb|CAA06473.1| (AJ005326) glutamate permease
[synthetic construct] >gi|4028991|emb|CAA06476.1| (AJ005329)
glutamate permease [synthetic construct]
Length = 459
Frame -2 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 459
0 150 300 450
Minus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.0030, P = 0.0030
Identities = 18/30 (60%), Positives = 21/30 (70%), Frame = -2
Query: 92 PSKV*HQCALVXNSCSPGDPLVXERPXPGW 3
PS+ +L+ NSCSPGDPLV ERP P W
Sbjct: 197 PSRSTVSISLISNSCSPGDPLVLERPPPRW 226
>gi|12720378|gb|AAK02244.1| (AE006050) unknown [Pasteurella multocida]
Length = 412
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 412
0 150 300
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.0069, P = 0.0069
Identities = 25/86 (29%), Positives = 35/86 (40%), Frame = +2
Query: 65 AHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIXLEVXSFXSXEPXXFGICCXGSX 244
+HID +GK DG +G + E + L G LE+ F E F GS
Sbjct: 78 SHIDTVVNAGKLDGPLGSVAGLEILFQLCEQGIKTRYPLELIIFTCEESSRFNYATLGSK 137
Query: 245 LLAGXXDLAYSLXTXXDXQXXSFXHA 322
++ G + A L D Q +F A
Sbjct: 138 VMCGVVEQA-GLSHLRDKQGTAFAQA 162
>gi|560558|gb|AAB31224.1| (S71742) influenza virus hemagglutinin 5' epitope
tag=fusion protein {N-terminal} [Saccharomyces cerevisiae=yeast,
YCpIF15,16,17 cloning vector, Peptide Plasmid Synthetic Partial, 50
aa]
Length = 50
Frame -1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | 50
0 20 40
Minus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.065, P = 0.063
Identities = 15/19 (78%), Positives = 16/19 (84%), Frame = -1
Query: 57 EFLQPGGSTSXRAAXTGLE 1
EFLQPGGSTS RAA T +E
Sbjct: 28 EFLQPGGSTSSRAAATAVE 46
>gi|560560|gb|AAB31225.1| (S71745) influenza virus hemagglutinin 5' epitope
tag=fusion protein {N-terminal, frame 3} [Saccharomyces
cerevisiae=yeast, YCpIF15,16,17 cloning vector, Peptide Plasmid
Synthetic Partial, 56 aa]
Length = 56
Frame -1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 56
0 20 40
Minus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.065, P = 0.063
Identities = 15/19 (78%), Positives = 16/19 (84%), Frame = -1
Query: 57 EFLQPGGSTSXRAAXTGLE 1
EFLQPGGSTS RAA T +E
Sbjct: 34 EFLQPGGSTSSRAAATAVE 52
>gi|417170|sp|Q01264|HYUC_PSESN HYDANTOIN UTILIZATION PROTEIN C (ORF4)
>gi|151284|gb|AAA25847.1| (M72717) DL-hydantoinase [Pseudomonas
sp.] >gi|216833|dbj|BAA01379.1| (D10494) N-carbamyl-L-amino acid
amidohydrolase [Pseudomonas sp.]
Length = 414
Frame 2 hits (HSPs): _________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 414
0 150 300
__________________
Annotated Domains:
DOMO DM03866: 1..413
PRODOM PD038201: AMB1(1) AMB2(1) HYUC(1) 6..61
PRODOM PD001808: Q93332(3) QPCT(2) 63..143
PRODOM PD210834: HYUC_PSESN 145..209
PRODOM PD001757: PEPT(5) DAPE(3) ACY1(2) 211..412
__________________
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 0.32, P = 0.27
Identities = 20/64 (31%), Positives = 30/64 (46%), Frame = +2
Query: 65 AHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIXLEVXSFXSXEPXXFGICCXGSX 244
+HID+ GK+DGV+GVL E + + + +EV +F E F GS
Sbjct: 82 SHIDSVRNGGKFDGVIGVLAGIEIVHAISEANVVHEHSIEVVAFCEEEGSRFNDGLFGSR 141
Query: 245 LLAG 256
+ G
Sbjct: 142 GMVG 145
>gi|285313|pir||D42594 N-carbamyl-L-amino acid amidohydrolase (EC 3.5.1.-) hyuC
[similarity] - Pseudomonas sp. plasmid pHN671
Length = 414
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 414
0 150 300
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 0.32, P = 0.27
Identities = 20/64 (31%), Positives = 30/64 (46%), Frame = +2
Query: 65 AHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIXLEVXSFXSXEPXXFGICCXGSX 244
+HID+ GK+DGV+GVL E + + + +EV +F E F GS
Sbjct: 82 SHIDSVRNGGKFDGVIGVLAGIEIVHAISEANVVHEHSIEVVAFCEEEGSRFNDGLFGSR 141
Query: 245 LLAG 256
+ G
Sbjct: 142 GMVG 145
>gi|7489187|pir||T02229 protein BYJ15 - common tobacco (fragment)
>gi|2280518|dbj|BAA21615.1| (AB005878) BYJ15 [Nicotiana tabacum]
Length = 172
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 172
0 50 100 150
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 0.35, P = 0.30
Identities = 17/23 (73%), Positives = 18/23 (78%), Frame = +1
Query: 1 LQPGXGRSXTSGSPGLQEFXTSA 69
L G GRS TSGSPGLQEF TS+
Sbjct: 3 LHRGGGRSRTSGSPGLQEFGTSS 25
>gi|3402817|emb|CAA07704.1| (AJ007829) lacZ' [Cloning vector pGreen]
Length = 120
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 120
0 50 100
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.48, P = 0.38
Identities = 15/19 (78%), Positives = 16/19 (84%), Frame = +2
Query: 2 SSPVXAALXLVDPPGCRNS 58
S+ V AAL LVDPPGCRNS
Sbjct: 21 STAVAAALELVDPPGCRNS 39
>gi|7228243|emb|CAA16615.2| (AL021637) hyuC-like protein [Arabidopsis thaliana]
>gi|7268802|emb|CAB79007.1| (AL161552) hyuC-like protein
[Arabidopsis thaliana]
Length = 525
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 525
0 150 300 450
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.63, P = 0.47
Identities = 23/66 (34%), Positives = 33/66 (50%), Frame = +2
Query: 65 AHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIX--LEVXSFXSXEPXXFGICCXG 238
+H+D +GKYDG +G++ A A+ VL G + +EV +F E F G
Sbjct: 166 SHMDTVIDAGKYDGSLGIISAISALKVLKIDGRLGELKRPVEVIAFSDEEGVRFQSTFLG 225
Query: 239 SXLLAG 256
S LAG
Sbjct: 226 SAALAG 231
>gi|10954712 ref|NP_066647.1| similar to amaB gene [Agrobacterium rhizogenes]
>gi|8918712|dbj|BAA97777.1| (AB039932) similar to amaB gene
[Agrobacterium rhizogenes] >gi|10567376|dbj|BAB16185.1| (AP002086)
similar to amaB gene [Agrobacterium rhizogenes]
Length = 421
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 421
0 150 300
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.67, P = 0.49
Identities = 22/78 (28%), Positives = 37/78 (47%), Frame = +2
Query: 59 ARAHIDAXPYSGKYDGVVGVLGAXEAIIVLX----RSGFXPXIXLEVXSFXSXEPXXFGI 226
A +H+D P G++DG +GVL A +A + + R P L V ++ + E +
Sbjct: 81 AGSHLDTQPRGGRFDGTLGVLAAGQAALDIHAEVQRGRCKPRYNLAVVNWTNEEGARYQP 140
Query: 227 CCXGSXLLAGXXDLAYSL 280
GS + +G L +L
Sbjct: 141 SLTGSAVFSGTLGLEDAL 158
>gi|9294789|gb|AAF86672.1|AF178450_1 (AF178450) beta-galactosidase alpha
peptide [Integration vector pCD11PSK]
>gi|9294798|gb|AAF86678.1|AF178453_1 (AF178453) beta-galactosidase
alpha peptide [Integration vector pCD13PSK]
Length = 127
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 127
0 50 100
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.71, P = 0.51
Identities = 15/19 (78%), Positives = 16/19 (84%), Frame = +2
Query: 2 SSPVXAALXLVDPPGCRNS 58
S+ V AAL LVDPPGCRNS
Sbjct: 21 STAVAAALELVDPPGCRNS 39
>gi|2492828|sp|Q57051|Y588_HAEIN HYPOTHETICAL PROTEIN HI0588
>gi|1075052|pir||D64079 probable N-carbamyl-L-amino acid
amidohydrolase (EC 3.5.1.-) HI0588 [similarity] - Haemophilus
influenzae (strain Rd KW20) >gi|1573578|gb|AAC22245.1| (U32740)
N-carbamyl-L-amino acid amidohydrolase [Haemophilus influenzae Rd]
Length = 411
Frame 2 hits (HSPs): ___________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 411
0 150 300
__________________
Annotated Domains:
PFAM Peptidase_M20: Peptidase family M20/M25/ 11..357
PRODOM PD009793: O32149(1) YLBB(1) Y588(1) 6..129
PRODOM PD116073: O32149(1) O85664(1) Y588(1) 135..204
PRODOM PD001757: PEPT(5) DAPE(3) ACY1(2) 206..403
PROSITE ARGE_DAPE_CPG2_1: ArgE / dapE / ACY1 / C 74..83
__________________
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 0.99, P = 0.63
Identities = 22/86 (25%), Positives = 34/86 (39%), Frame = +2
Query: 65 AHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIXLEVXSFXSXEPXXFGICCXGSX 244
+HID +GK+DG +G + E ++ L LE+ F E F GS
Sbjct: 78 SHIDTVVNAGKFDGPLGSVAGLEILLQLCEQNIQTRYPLELIIFTCEESSRFNFATLGSK 137
Query: 245 LLAGXXDLAYSLXTXXDXQXXSFXHA 322
++ G + L + D Q A
Sbjct: 138 VMCGIVNQE-KLSSLRDKQGKGLSEA 162
>gi|9910619|sp|O32149|ALLC_BACSU PROBABLE ALLANTOATE AMIDOHYDROLASE
>gi|7428263|pir||G70017 probable N-carbamyl-L-amino acid
amidohydrolase (EC 3.5.1.-) yurH [similarity] - Bacillus subtilis
>gi|2635750|emb|CAB15243.1| (Z99120) similar to N-carbamyl-L-amino
acid amidohydrolase [Bacillus subtilis]
Length = 412
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 412
0 150 300
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 1.4, P = 0.75
Identities = 23/64 (35%), Positives = 28/64 (43%), Frame = +2
Query: 65 AHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIXLEVXSFXSXEPXXFGICCXGSX 244
+HID GKYDG GVL A A+ L + P LE S E F + GS
Sbjct: 83 SHIDTVINGGKYDGAYGVLAAMLALKQLKETYGAPKKTLEAVSLCEEEGSRFPMTYWGSG 142
Query: 245 LLAG 256
+ G
Sbjct: 143 NMTG 146
>gi|11993889|gb|AAG42155.1| (AY012159) virion-associated nuclear-shuttling
protein [Mus musculus]
Length = 576
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | 576
0 150 300 450
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 1.4, P = 0.76
Identities = 17/24 (70%), Positives = 17/24 (70%), Frame = +1
Query: 1 LQPGXGRSXTSGSPGLQEFXTSAH 72
L G GRS TSGSPGLQEF T H
Sbjct: 7 LHRGGGRSRTSGSPGLQEFGTRVH 30
>gi|10566719|dbj|BAB15929.1| (AB029899) N-Carbamoyl-L-cysteine amidohydrolase
[Pseudomonas sp. ON4a]
Length = 435
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 435
0 150 300
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 1.5, P = 0.77
Identities = 18/52 (34%), Positives = 25/52 (48%), Frame = +2
Query: 65 AHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIXLEVXSFXSXEPXXF 220
+H D P G+YDG+ GVLG E I L +G +E + + E F
Sbjct: 103 SHADTQPTGGRYDGIYGVLGGLEVIRTLNDAGVRTEHPVEAVIWTNEEGSRF 154
>gi|7489188|pir||T02232 protein BYJ6 - common tobacco (fragment)
>gi|2280520|dbj|BAA21616.1| (AB005879) BYJ6 [Nicotiana tabacum]
Length = 177
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 177
0 50 100 150
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 1.6, P = 0.80
Identities = 16/20 (80%), Positives = 16/20 (80%), Frame = +1
Query: 10 GXGRSXTSGSPGLQEFXTSA 69
G GRS TSGSPGLQEF T A
Sbjct: 7 GGGRSRTSGSPGLQEFGTRA 26
>gi|2126861|pir||I40357 hypothetical protein 1 - Bacillus stearothermophilus
(fragment) >gi|436796|emb|CAA52341.1| (X74289) ORF1 [Bacillus
stearothermophilus]
Length = 350
Frame 2 hits (HSPs): __________
Annotated Domains: __
__________________________________________________
Database sequence: | | | | 350
0 150 300
__________________
Annotated Domains:
PROSITE MYB_1: Myb DNA-binding domain repeat sig 326..334
__________________
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 2.2, P = 0.89
Identities = 19/64 (29%), Positives = 29/64 (45%), Frame = +2
Query: 65 AHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIXLEVXSFXSXEPXXFGICCXGSX 244
+H+D+ G +DG +GVL E + + G +EV +F E F GS
Sbjct: 19 SHLDSVYNGGCFDGPLGVLAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGARFRFGMIGSR 78
Query: 245 LLAG 256
+AG
Sbjct: 79 AMAG 82
>gi|2492825|sp|Q53389|AMB2_BACST N-CARBAMOYL-L-AMINO ACID AMIDOHYDROLASE
(L-CARBAMOYLASE) >gi|538915|pir||JN0885 N-carbamyl-L-amino acid
amidohydrolase (EC 3.5.1.-) [validated] - Bacillus
stearothermophilus (strain NS1122A) >gi|460895|gb|AAC60456.1|
(S67784) N-carbamyl-L-amino acid amidohydrolase [Bacillus
stearothermophilus, NS1122A, Peptide, 409 aa]
Length = 409
Frame 2 hits (HSPs): _________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 409
0 150 300
__________________
Annotated Domains:
PFAM Peptidase_M20: Peptidase family M20/M25/ 25..355
PRODOM PD038201: AMB1(1) AMB2(1) HYUC(1) 1..57
PRODOM PD001808: Q93332(3) QPCT(2) 59..139
PRODOM PD155651: AMB1(1) AMB2(1) 141..193
PRODOM PD001757: PEPT(5) DAPE(3) ACY1(2) 195..401
__________________
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 2.8, P = 0.94
Identities = 19/64 (29%), Positives = 29/64 (45%), Frame = +2
Query: 65 AHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIXLEVXSFXSXEPXXFGICCXGSX 244
+H+D+ G +DG +GVL E + + G +EV +F E F GS
Sbjct: 78 SHLDSVYNGGCFDGPLGVLAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGARFRFGMIGSR 137
Query: 245 LLAG 256
+AG
Sbjct: 138 AMAG 141
>gi|2506176|sp|P37113|AMB1_BACST N-CARBAMOYL-L-AMINO ACID AMIDOHYDROLASE
(L-CARBAMOYLASE) >gi|1842192|emb|CAA69999.1| (Y08752)
N-carbamyl-L-amino acid amidohydrolase [Bacillus
stearothermophilus]
Length = 409
Frame 2 hits (HSPs): _________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 409
0 150 300
__________________
Annotated Domains:
PRODOM PD038201: AMB1(1) AMB2(1) HYUC(1) 1..57
PRODOM PD001808: Q93332(3) QPCT(2) 59..139
PRODOM PD155651: AMB1(1) AMB2(1) 141..193
PRODOM PD001757: PEPT(5) DAPE(3) ACY1(2) 195..401
PROSITE MYB_1: Myb DNA-binding domain repeat sig 385..393
__________________
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 2.8, P = 0.94
Identities = 19/64 (29%), Positives = 29/64 (45%), Frame = +2
Query: 65 AHIDAXPYSGKYDGVVGVLGAXEAIIVLXRSGFXPXIXLEVXSFXSXEPXXFGICCXGSX 244
+H+D+ G +DG +GVL E + + G +EV +F E F GS
Sbjct: 78 SHLDSVYNGGCFDGPLGVLAGVEVVQTMNEHGVVTHHPIEVVAFTDEEGARFRFGMIGSR 137
Query: 245 LLAG 256
+AG
Sbjct: 138 AMAG 141
>gi|10281475|gb|AAG15510.1|U56995_1 (U56995) mutant green fluorescent protein
[Cloning vector pGreenscript A]
Length = 302
Frame 2 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | || 302
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 6.4, P = 1.0
Identities = 15/19 (78%), Positives = 16/19 (84%), Frame = +2
Query: 2 SSPVXAALXLVDPPGCRNS 58
S+ V AAL LVDPPGCRNS
Sbjct: 21 STAVAAALELVDPPGCRNS 39
>gi|1684629|emb|CAA70550.1| (Y09374) lacZ-PhoC [synthetic construct]
Length = 316
Frame 2 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | 316
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 6.8, P = 1.0
Identities = 15/19 (78%), Positives = 16/19 (84%), Frame = +2
Query: 2 SSPVXAALXLVDPPGCRNS 58
S+ V AAL LVDPPGCRNS
Sbjct: 21 STAVAAALELVDPPGCRNS 39
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.92
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.359 0.162 0.591
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.324 0.141 0.446
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.339 0.151 0.591
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.334 0.142 0.456
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.339 0.152 0.537
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.356 0.157 0.532
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 169 126 10. 72 3 12 22 0.10 33
29 0.12 35
+2 0 169 126 10. 72 3 12 22 0.10 33
29 0.12 35
+1 0 170 125 10. 72 3 12 22 0.10 33
29 0.11 35
-1 0 170 127 10. 72 3 12 22 0.10 33
29 0.12 35
-2 0 169 127 10. 72 3 12 22 0.10 33
29 0.12 35
-3 0 169 121 10. 71 3 12 22 0.098 33
29 0.11 35
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 32
No. of states in DFA: 590 (58 KB)
Total size of DFA: 145 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 101.25u 1.13s 102.38t Elapsed: 00:00:18
Total cpu time: 101.28u 1.16s 102.44t Elapsed: 00:00:18
Start: Mon Oct 1 20:36:30 2001 End: Mon Oct 1 20:36:48 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000