R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|5091556|gb|AAD39585.1|AC007067_25 (AC007067) T10O24.25 [Arabidopsis
thaliana]
Length = 288
Frame -2 hits (HSPs): _______
Frame -3 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | | 288
0 50 100 150 200 250
Minus Strand HSPs:
Score = 59 (20.8 bits), Expect = 1.3, Sum P(2) = 0.71
Identities = 17/39 (43%), Positives = 23/39 (58%), Frame = -2
Query: 134 KHLNLLKGKT*PLYSKDVCLTQNTRVHXNHHRHNT*VLG 18
K+ NL + K PL++KDV N R H NHH + +LG
Sbjct: 228 KNSNL-RFKLYPLWAKDV---NNNR-HHNHHPNQNCILG 261
Score = 29 (10.2 bits), Expect = 1.3, Sum P(2) = 0.71
Identities = 5/5 (100%), Positives = 5/5 (100%), Frame = -3
Query: 154 THPSQ 140
THPSQ
Sbjct: 118 THPSQ 122
>gi|493856|pdb|1BAF|L Chain L, Fab Fragment Of Murine Monoclonal Antibody An02
Complex With Its Hapten (2,2,6,6-Tetramethyl-1-Piperidinyloxy-
Dinitrophenyl)
Length = 214
Frame 2 hits (HSPs): ______
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | 214
0 50 100 150 200
Plus Strand HSPs:
Score = 51 (18.0 bits), Expect = 3.1, Sum P(2) = 0.96
Identities = 12/26 (46%), Positives = 17/26 (65%), Frame = +2
Query: 71 VLNKHP*NKVVMSCLSASSSVLDL*W 148
+++ P KV M+C SASSSV + W
Sbjct: 10 IMSASPGEKVTMTC-SASSSVYYMYW 34
Score = 30 (10.6 bits), Expect = 3.1, Sum P(2) = 0.96
Identities = 5/6 (83%), Positives = 6/6 (100%), Frame = +1
Query: 148 GVLSSW 165
GVL+SW
Sbjct: 158 GVLNSW 163
>gi|110350|pir||S25058 Ig kappa chain - mouse >gi|54829|emb|CAA47650.1|
(X67211) immunoglobulin kappa light chain [Mus musculus]
Length = 235
Frame 2 hits (HSPs): ______
Frame 1 hits (HSPs): __
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | | 235
0 50 100 150 200
__________________
Annotated Domains:
PROSITE IG_MHC: Immunoglobulins and major histoc 213..219
__________________
Plus Strand HSPs:
Score = 52 (18.3 bits), Expect = 3.2, Sum P(2) = 0.96
Identities = 12/26 (46%), Positives = 17/26 (65%), Frame = +2
Query: 71 VLNKHP*NKVVMSCLSASSSVLDL*W 148
+++ P KV M+C SASSSV + W
Sbjct: 32 IMSASPGEKVTMTC-SASSSVSKMQW 56
Score = 30 (10.6 bits), Expect = 3.2, Sum P(2) = 0.96
Identities = 5/6 (83%), Positives = 6/6 (100%), Frame = +1
Query: 148 GVLSSW 165
GVL+SW
Sbjct: 179 GVLNSW 184
>gi|5870749|gb|AAD54572.1|AF137206_1 (AF137206) rhodopsin [Acipenser sp.]
Length = 288
Frame 2 hits (HSPs): _____
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 288
0 50 100 150 200 250
Plus Strand HSPs:
Score = 43 (15.1 bits), Expect = 3.8, Sum P(2) = 0.98
Identities = 7/21 (33%), Positives = 12/21 (57%), Frame = +2
Query: 14 CSLKLMYYVCDGXRALWCFVL 76
C+++ + G ALWC V+
Sbjct: 80 CNIEGFFATLGGEIALWCLVV 100
Score = 41 (14.4 bits), Expect = 3.8, Sum P(2) = 0.98
Identities = 9/22 (40%), Positives = 15/22 (68%), Frame = +1
Query: 112 PFSKFKCFG---LVMGVLSSWLL 171
P S F+ FG +MGV+ +W++
Sbjct: 112 PMSNFR-FGENHAIMGVVFTWIM 133
>gi|7415929|dbj|BAA93613.1| (AB038631) ORF3 [TTV-like mini virus]
Length = 115
Frame -2 hits (HSPs): _______ __________
__________________________________________________
Database sequence: | | | | 115
0 50 100
Minus Strand HSPs:
Score = 40 (14.1 bits), Expect = 3.8, Sum P(2) = 0.98
Identities = 8/21 (38%), Positives = 11/21 (52%), Frame = -2
Query: 98 LYSKDVCLTQNTRVHXNHHRH 36
L S+ + Q+T H H RH
Sbjct: 60 LQSQQPGVQQHTEKHKTHRRH 80
Score = 33 (11.6 bits), Expect = 3.8, Sum P(2) = 0.98
Identities = 7/15 (46%), Positives = 10/15 (66%), Frame = -2
Query: 170 SNHELNTPITSPKHL 126
+N + +PITS K L
Sbjct: 2 NNQPIPSPITSYKQL 16
>gi|3212405|pdb|1A6T|A Chain A, Fab Fragment Of Mab1-Ia Monoclonal Antibody To
Human Rhinovirus 14 Nim-Ia Site >gi|3212407|pdb|1A6T|C Chain C, Fab
Fragment Of Mab1-Ia Monoclonal Antibody To Human Rhinovirus 14
Nim-Ia Site
Length = 210
Frame 2 hits (HSPs): ______
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | 210
0 50 100 150 200
Plus Strand HSPs:
Score = 50 (17.6 bits), Expect = 3.8, Sum P(2) = 0.98
Identities = 12/26 (46%), Positives = 17/26 (65%), Frame = +2
Query: 71 VLNKHP*NKVVMSCLSASSSVLDL*W 148
+L+ P KV+M+C S SSSV + W
Sbjct: 10 ILSASPGEKVIMTC-SPSSSVSYMQW 34
Score = 30 (10.6 bits), Expect = 3.8, Sum P(2) = 0.98
Identities = 5/6 (83%), Positives = 6/6 (100%), Frame = +1
Query: 148 GVLSSW 165
GVL+SW
Sbjct: 157 GVLNSW 162
>gi|3212470|pdb|1AY1|L Chain L, Anti Taq Fab Tp7 >gi|3891940|pdb|1BGX|L Chain
L, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
Length = 210
Frame 2 hits (HSPs): ______
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | 210
0 50 100 150 200
Plus Strand HSPs:
Score = 50 (17.6 bits), Expect = 3.8, Sum P(2) = 0.98
Identities = 12/26 (46%), Positives = 17/26 (65%), Frame = +2
Query: 71 VLNKHP*NKVVMSCLSASSSVLDL*W 148
+++ P KV M+C SASSSV + W
Sbjct: 10 IMSASPGEKVTMTC-SASSSVSYMYW 34
Score = 30 (10.6 bits), Expect = 3.8, Sum P(2) = 0.98
Identities = 5/6 (83%), Positives = 6/6 (100%), Frame = +1
Query: 148 GVLSSW 165
GVL+SW
Sbjct: 157 GVLNSW 162
>gi|466311|gb|AAA39083.1| (L30139) immunoglobulin light chain V region [Mus
musculus]
Length = 106
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | 106
0 20 40 60 80 100
Plus Strand HSPs:
Score = 59 (20.8 bits), Expect = 4.1, P = 0.98
Identities = 13/26 (50%), Positives = 18/26 (69%), Frame = +2
Query: 71 VLNKHP*NKVVMSCLSASSSVLDL*W 148
+++ P KV M+C SASSSV D+ W
Sbjct: 10 IMSASPGEKVTMTC-SASSSVSDMHW 34
>gi|468353|gb|AAA39085.1| (L31516) immunoglobulin light chain V region [Mus
musculus]
Length = 106
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | 106
0 20 40 60 80 100
Plus Strand HSPs:
Score = 59 (20.8 bits), Expect = 4.1, P = 0.98
Identities = 13/26 (50%), Positives = 18/26 (69%), Frame = +2
Query: 71 VLNKHP*NKVVMSCLSASSSVLDL*W 148
+++ P KV M+C SASSSV D+ W
Sbjct: 10 IMSASPGEKVTMTC-SASSSVSDMHW 34
>gi|8134388|sp|Q9WWR3|CYOC_PSEPU CYTOCHROME O UBIQUINOL OXIDASE SUBUNIT III
>gi|4586339|dbj|BAA76358.1| (AB016787) cytochrome o ubiquinol
oxidase C [Pseudomonas putida]
Length = 207
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 4.4, P = 0.99
Identities = 15/36 (41%), Positives = 20/36 (55%), Frame = +2
Query: 56 ALWCFVLNKH---P*NKVVMSCLSASSSVLDL*WVC 154
A+ + +NKH P K MSCLS LD+ W+C
Sbjct: 161 AIMMYQINKHGITPTAKTRMSCLSLFWHFLDVVWIC 196
>gi|1065189|pdb|1BQL|L Chain L, Hyhel-5 Fab Complexed With Bobwhite Quail
Lysozyme >gi|1065174|pdb|2IFF|L Chain L, Igg1 Fab Fragment
(Hyhel-5) Complexed With Lysozyme Mutant With Arg 68 Replaced By
Lys (R68k) >gi|1127202|pdb|3HFL|L Chain L, IgG1 Fab Fragment
(HyHEL-5) Complexed With Lysozyme (E.C.3.2.1.17)
Length = 212
Frame 2 hits (HSPs): ______
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | 212
0 50 100 150 200
Plus Strand HSPs:
Score = 49 (17.2 bits), Expect = 5.0, Sum P(2) = 0.99
Identities = 12/26 (46%), Positives = 17/26 (65%), Frame = +2
Query: 71 VLNKHP*NKVVMSCLSASSSVLDL*W 148
+++ P KV M+C SASSSV + W
Sbjct: 10 IMSASPGEKVTMTC-SASSSVNYMYW 34
Score = 30 (10.6 bits), Expect = 5.0, Sum P(2) = 0.99
Identities = 5/6 (83%), Positives = 6/6 (100%), Frame = +1
Query: 148 GVLSSW 165
GVL+SW
Sbjct: 156 GVLNSW 161
>gi|5931796|emb|CAB56646.1| (AJ249202) rod opsin [Anguilla japonica]
Length = 352
Frame 2 hits (HSPs): ____
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 352
0 150 300
Plus Strand HSPs:
Score = 43 (15.1 bits), Expect = 6.0, Sum P(2) = 1.0
Identities = 7/21 (33%), Positives = 12/21 (57%), Frame = +2
Query: 14 CSLKLMYYVCDGXRALWCFVL 76
C+++ + G ALWC V+
Sbjct: 110 CNIEGFFATLGGEIALWCLVV 130
Score = 41 (14.4 bits), Expect = 6.0, Sum P(2) = 1.0
Identities = 10/22 (45%), Positives = 14/22 (63%), Frame = +1
Query: 112 PFSKFKCFG---LVMGVLSSWLL 171
P S F+ FG +MGV +WL+
Sbjct: 142 PMSNFR-FGENHAIMGVAFTWLM 163
>gi|3322249|gb|AAC26549.1| (AF003724) anti BoNT/A Hc scFv antibody [Mus
musculus]
Length = 232
Frame 2 hits (HSPs): __ _______
__________________________________________________
Database sequence: | | | | | | 232
0 50 100 150 200
Plus Strand HSPs:
Score = 50 (17.6 bits), Expect = 6.3, Sum P(2) = 1.0
Identities = 11/26 (42%), Positives = 18/26 (69%), Frame = +2
Query: 71 VLNKHP*NKVVMSCLSASSSVLDL*W 148
+++ P KV+++C SASSSV + W
Sbjct: 135 IMSSSPGEKVIITC-SASSSVSYMHW 159
Score = 29 (10.2 bits), Expect = 6.3, Sum P(2) = 1.0
Identities = 5/7 (71%), Positives = 6/7 (85%), Frame = +2
Query: 29 MYYVCDG 49
+YYV DG
Sbjct: 100 IYYVYDG 106
>gi|2194074|pdb|1CLO|L Chain L, Anti-Carcinoembryonic Antigen Monoclonal
Antibody A5b7
Length = 213
Frame 2 hits (HSPs): ______
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | 213
0 50 100 150 200
Plus Strand HSPs:
Score = 48 (16.9 bits), Expect = 6.5, Sum P(2) = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Frame = +2
Query: 71 VLNKHP*NKVVMSCLSASSSVLDL*W 148
+L+ P KV M+C ASSSV + W
Sbjct: 10 ILSASPGEKVTMTC-RASSSVTYIHW 34
Score = 30 (10.6 bits), Expect = 6.5, Sum P(2) = 1.0
Identities = 5/6 (83%), Positives = 6/6 (100%), Frame = +1
Query: 148 GVLSSW 165
GVL+SW
Sbjct: 157 GVLNSW 162
>gi|5835473 ref|NP_008402.1|ND4_13475 NADH dehydrogenase subunit 4
[Balanoglossus carnosus] >gi|7432327|pir||T11136 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 4 - acorn worm mitochondrion
>gi|3065683|gb|AAD11946.1| (AF051097) NADH dehydrogenase subunit 4
[Balanoglossus carnosus]
Length = 462
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): __
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | 462
0 150 300 450
Plus Strand HSPs:
Score = 41 (14.4 bits), Expect = 8.1, Sum P(3) = 1.0
Identities = 7/21 (33%), Positives = 15/21 (71%), Frame = +1
Query: 31 VLCL*WXS-CTLVFCVKQTSLE 93
++C+ W + T + CV+QT ++
Sbjct: 265 IICI-WGALATSLICVRQTDMK 285
Score = 29 (10.2 bits), Expect = 8.1, Sum P(3) = 1.0
Identities = 6/11 (54%), Positives = 8/11 (72%), Frame = +2
Query: 8 LMCSLKLMYYV 40
L+CSL L+ V
Sbjct: 99 LLCSLTLILIV 109
Score = 29 (10.2 bits), Expect = 8.1, Sum P(3) = 1.0
Identities = 6/15 (40%), Positives = 8/15 (53%), Frame = +3
Query: 126 QVFWTCDGCVKLMVA 170
Q W G + LM+A
Sbjct: 306 QTTWGIHGSLILMIA 320
>gi|1171917|sp|P41590|OPSD_ASTFA RHODOPSIN >gi|2119489|pir||I50047 rhodopsin -
Mexican tetra >gi|525316|gb|AAA74422.1| (U12328) rhodopsin
[Astyanax mexicanus]
Length = 352
Frame 2 hits (HSPs): ____
Frame 1 hits (HSPs): ____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 352
0 150 300
__________________
Annotated Domains:
BLOCKS BL00237A: G-protein coupled receptors pr 103..142
BLOCKS BL00237B: G-protein coupled receptors pr 212..223
BLOCKS BL00237C: G-protein coupled receptors pr 245..271
BLOCKS BL00237D: G-protein coupled receptors pr 298..314
DOMO DM00013: G-PROTEINCOUPLEDRECEPTORS 31..322
Entrez Domain: EXTRACELLULAR (POTENTIAL). 1..36
Entrez Transmembrane region: 1 (POTENTIAL). 37..61
Entrez Domain: CYTOPLASMIC (POTENTIAL). 62..73
Entrez Transmembrane region: 2 (POTENTIAL). 74..98
Entrez Domain: EXTRACELLULAR (POTENTIAL). 99..113
Entrez Transmembrane region: 3 (POTENTIAL). 114..133
Entrez Domain: CYTOPLASMIC (POTENTIAL). 134..152
Entrez Transmembrane region: 4 (POTENTIAL). 153..176
Entrez Domain: EXTRACELLULAR (POTENTIAL). 177..202
Entrez Transmembrane region: 5 (POTENTIAL). 203..230
Entrez Domain: CYTOPLASMIC (POTENTIAL). 231..252
Entrez Transmembrane region: 6 (POTENTIAL). 253..276
Entrez Domain: EXTRACELLULAR (POTENTIAL). 277..284
Entrez Transmembrane region: 7 (POTENTIAL). 285..309
Entrez Domain: CYTOPLASMIC (POTENTIAL). 310..352
Entrez glycosylation site: BY SIMILARITY. 2
Entrez glycosylation site: BY SIMILARITY. 15
Entrez binding site: RETINAL CHROMOPHORE (BY SI 296
Entrez lipid-binding site: PALMITATE (BY SIMILA 322
Entrez lipid-binding site: PALMITATE (BY SIMILA 323
Entrez mutagenized site: Y->F: DECREASE OF ABSO 261
PFAM 7tm_1: 7 transmembrane receptor (rhodops 54..306
PRINTS RHODOPSIN1: Rhodopsin motif I - 2 3..21
PRINTS RHODOPSIN2: Rhodopsin motif II - 2 22..38
PRINTS GPCRRHODOPSN1: GPCR transmembrane motif 39..63
PRINTS OPSIN1: Opsin motif I - 1 60..72
PRINTS GPCRRHODOPSN2: GPCR transmembrane motif 72..93
PRINTS RHODOPSIN3: Rhodopsin motif III - 2 85..101
PRINTS GPCRRHODOPSN3: GPCR transmembrane motif 117..139
PRINTS GPCRRHODOPSN4: GPCR transmembrane motif 152..173
PRINTS OPSIN2: Opsin motif II - 1 174..186
PRINTS RHODOPSIN4: Rhodopsin motif IV - 2 191..207
PRINTS GPCRRHODOPSN5: GPCR transmembrane motif 204..227
PRINTS GPCRRHODOPSN6: GPCR transmembrane motif 250..274
PRINTS RHODOPSIN5: Rhodopsin motif V - 2 271..289
PRINTS OPSIN3: Opsin motif III - 1 285..297
PRINTS GPCRRHODOPSN7: GPCR transmembrane motif 288..314
PRINTS RHODOPSIN6: Rhodopsin motif VI - 2 319..332
PRODOM PD000638: OPSD(41) OPSB(12) OPSG(9) 6..65
PRODOM PD000009: OPSD(50) OPSB(13) MSHR(13) 67..174
PRODOM PD000346: OPSD(50) OPSB(13) OPSG(9) 176..228
PRODOM PD028783: OPSD(33) OPSB(11) OPSG(9) 231..278
PRODOM PD000965: OPSD(41) OPSB(12) OPSG(9) 280..333
PROSITE OPSIN: Visual pigments (opsins) retinal 290..306
__________________
Plus Strand HSPs:
Score = 45 (15.8 bits), Expect = 9.4, Sum P(2) = 1.0
Identities = 8/23 (34%), Positives = 13/23 (56%), Frame = +2
Query: 8 LMCSLKLMYYVCDGXRALWCFVL 76
L C+L+ + G +LWC V+
Sbjct: 108 LGCNLEGFFATFGGINSLWCLVV 130
Score = 37 (13.0 bits), Expect = 9.4, Sum P(2) = 1.0
Identities = 9/22 (40%), Positives = 13/22 (59%), Frame = +1
Query: 112 PFSKFKCFG---LVMGVLSSWLL 171
P S F+ FG +MGV +W +
Sbjct: 142 PMSNFR-FGENHAIMGVAFTWFM 163
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.87
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.363 0.154 0.633
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.358 0.154 0.645
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.356 0.157 0.612
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.363 0.157 0.551
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.336 0.145 0.481
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.378 0.163 0.641
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 56 54 10. 58 3 12 22 0.12 29
26 0.097 29
+2 0 56 53 10. 58 3 12 22 0.11 29
26 0.090 29
+1 0 57 55 10. 58 3 12 22 0.12 29
26 0.10 29
-1 0 57 54 10. 58 3 12 22 0.12 29
26 0.097 29
-2 0 56 54 10. 58 3 12 22 0.12 29
26 0.097 29
-3 0 56 53 10. 58 3 12 22 0.11 29
26 0.090 29
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 16
No. of states in DFA: 573 (56 KB)
Total size of DFA: 109 KB (128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 55.87u 0.89s 56.76t Elapsed: 00:00:16
Total cpu time: 55.91u 0.91s 56.82t Elapsed: 00:00:17
Start: Wed Jan 16 21:53:04 2002 End: Wed Jan 16 21:53:21 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000