R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 60 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|6587821|gb|AAF18512.1|AC010924_25 (AC010924) Contains similarity to
gb|AF181686 membrane protein TMS1d from Drosophila melanogaster.
ESTs gb|R64994, gb|AI994832, gb|Z47674 come from this gene.
[Arabidopsis thaliana]
Length = 412
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): ___________________
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 412
0 150 300
Plus Strand HSPs:
Score = 654 (230.2 bits), Expect = 4.7e-73, Sum P(2) = 4.7e-73
Identities = 118/156 (75%), Positives = 133/156 (85%), Frame = +2
Query: 146 MWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFAFSLVVAWILREVAAPLMESL 325
M+AASCLASCCAACACDACRTVVSGISRRSARIAYCGLFA SL+V+WILREVAAPLME L
Sbjct: 1 MFAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL 60
Query: 326 PWINHFKHTPSREWFETDAVLRVSLGNFLFFTILAVLMVGVKTQRDPRDSMHHGGWMMKI 505
PWINHF TP REWFETDAVLRVSLGNFLFF+IL+V+M+GVK Q+DPRD +HHGGWMMKI
Sbjct: 61 PWINHFHKTPDREWFETDAVLRVSLGNFLFFSILSVMMIGVKNQKDPRDGIHHGGWMMKI 120
Query: 506 ICWCLLVIFMFFVQMRSSASMKQYQRLARACFFLVK 613
ICWC+LVIFMFF+ + + + F LV+
Sbjct: 121 ICWCILVIFMFFLPNEIISFYESMSKFGAGFFLLVQ 156
Score = 112 (39.4 bits), Expect = 4.7e-73, Sum P(2) = 4.7e-73
Identities = 23/57 (40%), Positives = 31/57 (54%), Frame = +3
Query: 630 FGHGWNDKWVGYEEQFW--DMFIWWFPCWMGHIAFQGVFFTFYA-FGKD-GDSWLFI 788
F HGWND WVGY+EQFW + + C++ F G F ++ G D G + FI
Sbjct: 163 FVHGWNDTWVGYDEQFWYAALLVVSLVCYLATFVFSGFLFHWFTPSGHDCGLNTFFI 219
Score = 111 (39.1 bits), Expect = 0.013, P = 0.013
Identities = 37/78 (47%), Positives = 45/78 (57%), Frame = +1
Query: 538 FRPNEIISFYETISKVGSGMFLLGQGMLLVDLVMDGMTN---GLDMKNNSGTCLFGGSLV 708
F PNEIISFYE++SK G+G FLL Q +LL+D V G + G D + L SLV
Sbjct: 132 FLPNEIISFYESMSKFGAGFFLLVQVVLLLDFV-HGWNDTWVGYD-EQFWYAALLVVSLV 189
Query: 709 GW-GTLHSKGF-FLLFTPLG 762
+ T GF F FTP G
Sbjct: 190 CYLATFVFSGFLFHWFTPSG 209
>gi|6862921|gb|AAF30310.1|AC018907_10 (AC018907) hypothetical protein
[Arabidopsis thaliana]
Length = 315
Frame 3 hits (HSPs): __________
Frame 2 hits (HSPs): ____________
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | | 315
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 141 (49.6 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 32/76 (42%), Positives = 40/76 (52%), Frame = +2
Query: 437 MVGVKTQRDPRDSMHHGGWMMKIICWCLLVIFMFFVQMRSSASMKQYQRLARACFFLVK- 613
M+GVK Q D RDS HHGGW +K+I W LLV+ MFFV + + F LV+
Sbjct: 1 MIGVKDQNDRRDSWHHGGWGLKMIVWFLLVVLMFFVPNVIVSLYGTLSKFGAGAFLLVQV 60
Query: 614 -----ACSWWIWSWME 646
A W SW+E
Sbjct: 61 VLLLDATHNWNDSWVE 76
Score = 88 (31.0 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 19/34 (55%), Positives = 24/34 (70%), Frame = +1
Query: 529 LYVFRPNEIISFYETISKVGSGMFLLGQGMLLVD 630
L F PN I+S Y T+SK G+G FLL Q +LL+D
Sbjct: 32 LMFFVPNVIVSLYGTLSKFGAGAFLLVQVVLLLD 65
Score = 83 (29.2 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 18/58 (31%), Positives = 29/58 (50%), Frame = +3
Query: 636 HGWNDKWVGYEEQFW--DMFIWWFPCWMGHIAFQGVFFTFY-AFGKD-GDSWLFITRP 797
H WND WV +E+ W + + C++ F G+ F ++ G+D G + FI P
Sbjct: 68 HNWNDSWVEKDEKKWYIALLVISIVCYIATYTFSGILFIWFNPSGQDCGLNVFFIVMP 125
>gi|11282574|pir||T46332 hypothetical protein DKFZp434H0413.1 - human
(fragment) >gi|6807690|emb|CAB70662.1| (AL137261) hypothetical
protein [Homo sapiens]
Length = 457
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | || 457
0 150 300 450
Plus Strand HSPs:
Score = 150 (52.8 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 52/185 (28%), Positives = 82/185 (44%), Frame = +2
Query: 134 EEGSMWAASCLAS---C-CAACACDACRTVVSGISRRSARIAYCGLFAFSLVVAWILREV 301
E GS+ +AS C C + C CR SG + R+ Y + VA ++
Sbjct: 4 EMGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVM--- 60
Query: 302 AAPLMES----LPWI--NHFKHTPSREWFETDAVLRVSLGNFLFFTILAVLMVGVKTQRD 463
P ME +P N P AV R+ G +F+ +L++LM+ VK+ D
Sbjct: 61 LIPGMEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSD 120
Query: 464 PRDSMHHGGWMMKIICWCLLVIFMFFVQMRSSASMKQYQRLARA-CFFLVKA------CS 622
PR ++H+G W K ++I FF+ + ++ Y +A A CF L++
Sbjct: 121 PRAAVHNGFWFFKFAAAIAIIIGAFFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAH 180
Query: 623 WWIWSWME 646
W SW+E
Sbjct: 181 SWNESWVE 188
Score = 49 (17.2 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = +3
Query: 630 FGHGWNDKWVGYEEQ 674
F H WN+ WV E+
Sbjct: 178 FAHSWNESWVEKMEE 192
>gi|6382026|dbj|BAA86567.1| (AB033079) KIAA1253 protein [Homo sapiens]
Length = 472
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 472
0 150 300 450
Plus Strand HSPs:
Score = 150 (52.8 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 52/185 (28%), Positives = 82/185 (44%), Frame = +2
Query: 134 EEGSMWAASCLAS---C-CAACACDACRTVVSGISRRSARIAYCGLFAFSLVVAWILREV 301
E GS+ +AS C C + C CR SG + R+ Y + VA ++
Sbjct: 19 EMGSVLGLCSMASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVM--- 75
Query: 302 AAPLMES----LPWI--NHFKHTPSREWFETDAVLRVSLGNFLFFTILAVLMVGVKTQRD 463
P ME +P N P AV R+ G +F+ +L++LM+ VK+ D
Sbjct: 76 LIPGMEEQLNKIPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSD 135
Query: 464 PRDSMHHGGWMMKIICWCLLVIFMFFVQMRSSASMKQYQRLARA-CFFLVKA------CS 622
PR ++H+G W K ++I FF+ + ++ Y +A A CF L++
Sbjct: 136 PRAAVHNGFWFFKFAAAIAIIIGAFFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAH 195
Query: 623 WWIWSWME 646
W SW+E
Sbjct: 196 SWNESWVE 203
Score = 49 (17.2 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = +3
Query: 630 FGHGWNDKWVGYEEQ 674
F H WN+ WV E+
Sbjct: 193 FAHSWNESWVEKMEE 207
>gi|8895091|gb|AAF80758.1|AF164794_1 (AF164794) Diff33 protein homolog [Homo
sapiens]
Length = 453
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | || 453
0 150 300 450
Plus Strand HSPs:
Score = 149 (52.5 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 48/174 (27%), Positives = 77/174 (44%), Frame = +2
Query: 155 ASCLASCCAACACDACRTVVSGISRRSARIAYCGLFAFSLVVAWILREVAAPLMES---- 322
AS + C + C CR SG + R+ Y + VA ++ P ME
Sbjct: 11 ASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVM---LIPGMEEQLNK 67
Query: 323 LPWI--NHFKHTPSREWFETDAVLRVSLGNFLFFTILAVLMVGVKTQRDPRDSMHHGGWM 496
+P N P AV R+ G +F+ +L++LM+ VK+ DPR ++H+G W
Sbjct: 68 IPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWF 127
Query: 497 MKIICWCLLVIFMFFVQMRSSASMKQYQRLARA-CFFLVKA------CSWWIWSWME 646
K ++I FF+ + ++ Y +A A CF L++ W SW+E
Sbjct: 128 FKFAAAIAIIIGAFFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVE 184
Score = 49 (17.2 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = +3
Query: 630 FGHGWNDKWVGYEEQ 674
F H WN+ WV E+
Sbjct: 174 FAHSWNESWVEKMEE 188
>gi|9790269 ref|NP_062734.1| tumor differentially expressed 1, like; membrane
protein TMS-2 [Mus musculus] >gi|5853321|gb|AAD54421.1| (AF181685)
membrane protein TMS-2 [Mus musculus]
Length = 453
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | || 453
0 150 300 450
Plus Strand HSPs:
Score = 148 (52.1 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 48/174 (27%), Positives = 77/174 (44%), Frame = +2
Query: 155 ASCLASCCAACACDACRTVVSGISRRSARIAYCGLFAFSLVVAWILREVAAPLMES---- 322
AS + C + C CR SG + R+ Y + VA ++ P ME
Sbjct: 11 ASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVM---LIPGMEEQLNK 67
Query: 323 LPWI--NHFKHTPSREWFETDAVLRVSLGNFLFFTILAVLMVGVKTQRDPRDSMHHGGWM 496
+P N P AV R+ G +F+ +L++LM+ VK+ DPR ++H+G W
Sbjct: 68 IPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWF 127
Query: 497 MKIICWCLLVIFMFFVQMRSSASMKQYQRLARA-CFFLVKA------CSWWIWSWME 646
K ++I FF+ + ++ Y +A A CF L++ W SW+E
Sbjct: 128 FKFATAVAIIIGAFFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVE 184
Score = 49 (17.2 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = +3
Query: 630 FGHGWNDKWVGYEEQ 674
F H WN+ WV E+
Sbjct: 174 FAHSWNESWVEKMEE 188
>gi|3294180|emb|CAB16204.1| (Z99129) dJ425C14.2 (Placental protein DIFF33 LIKE)
[Homo sapiens]
Length = 440
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | 440
0 150 300
Plus Strand HSPs:
Score = 144 (50.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 46/167 (27%), Positives = 74/167 (44%), Frame = +2
Query: 176 CAACACDACRTVVSGISRRSARIAYCGLFAFSLVVAWILREVAAPLMES----LPWI--N 337
C + C CR SG + R+ Y + VA ++ P ME +P N
Sbjct: 5 CGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVM---LIPGMEEQLNKIPGFCEN 61
Query: 338 HFKHTPSREWFETDAVLRVSLGNFLFFTILAVLMVGVKTQRDPRDSMHHGGWMMKIICWC 517
P AV R+ G +F+ +L++LM+ VK+ DPR ++H+G W K
Sbjct: 62 EKGVVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWFFKFAAAI 121
Query: 518 LLVIFMFFVQMRSSASMKQYQRLARA-CFFLVKA------CSWWIWSWME 646
++I FF+ + ++ Y +A A CF L++ W SW+E
Sbjct: 122 AIIIGAFFIPEGTFTTVWFYVGMAGAFCFILIQLVLLIDFAHSWNESWVE 171
Score = 49 (17.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = +3
Query: 630 FGHGWNDKWVGYEEQ 674
F H WN+ WV E+
Sbjct: 161 FAHSWNESWVEKMEE 175
>gi|7506652|pir||T24196 hypothetical protein R11H6.2 - Caenorhabditis elegans
>gi|3879145|emb|CAB07645.1| (Z93386) predicted using
Genefinder~Similarity to Human placenta (DIFF33) protein
(TR:Q13530)~cDNA EST yk198a11.5 comes from this gene
[Caenorhabditis elegans]
Length = 442
Frame 2 hits (HSPs): ___________________
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 442
0 150 300
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 46/167 (27%), Positives = 73/167 (43%), Frame = +2
Query: 140 GSMWAAS-CLAS--CC-AACACDACRTVVSGISRRSA-RIAYCGLF--AFSLVVAWILRE 298
G++ AA C AS CC + AC C + G + RI Y + A + V +L
Sbjct: 2 GALLAAPFCAASAACCFGSSACSLCCSACPGAKNSTTTRIMYALMLISATFMAVVMLLPG 61
Query: 299 VAAPLMESLPWI----NHFKHTPSREWFETDAVLRVSLGNFLFFTILAVLMVGVKTQRDP 466
V L+E+ W+ N + AV RV G FF + +LM GV + +D
Sbjct: 62 VQKKLVEN-KWLCDGLNEYAGVNCEHAIGYQAVYRVCAGAASFFFLFMLLMFGVSSSKDG 120
Query: 467 RDSMHHGGWMMKIICWCLLVIFMFFVQMRSSASMKQYQRLARACFFLV 610
R S+ +G W K + ++ FF+ + A+ Y + A F++
Sbjct: 121 RSSIQNGFWFFKYLLMFGIIGGFFFIGSETLATPLMYIGMLGAFLFIL 168
Score = 49 (17.2 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 14/45 (31%), Positives = 24/45 (53%), Frame = +1
Query: 574 ISKVGSGMFLLGQGMLLVDLVMDGMTNGLDMKNNSGTCLFGGSLV 708
I +G+ +F+L Q +L+VD G+ N+S C + G L+
Sbjct: 158 IGMLGAFLFILIQLILIVDFA-HGLAESQYEDNDSRAC-YAGLLI 200
>gi|7324209|gb|AAF59616.1| (AC024832) contains similarity to TR:O75655
[Caenorhabditis elegans]
Length = 422
Frame 2 hits (HSPs): _____________________
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | 422
0 150 300
Plus Strand HSPs:
Score = 138 (48.6 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 46/167 (27%), Positives = 75/167 (44%), Frame = +2
Query: 140 GSMWAA-SCLAS--CC-AACACDACRTVVSGI-SRRSARIAYCGLFAFSLVVAWI--LRE 298
G++ AA +C AS CC + AC C ++ S + RI Y L S ++ I L
Sbjct: 33 GALLAAPACAASSACCFGSAACSLCCSICPTTKSSTTTRIMYAFLLFTSTFLSCIMLLPG 92
Query: 299 VAAPLMESLPW----INHFKHTPSREWFETDAVLRVSLGNFLFFTILAVLMVGVKTQRDP 466
+ L E+ W +N + AV RV F+ + ++M+GVK +D
Sbjct: 93 IQNKLAEN-KWFCEGLNEYAGISCAHATGFQAVYRVCAATASFYLLFMLIMIGVKDSKDG 151
Query: 467 RDSMHHGGWMMKIICWCLLVIFMFFVQMRSSASMKQYQRLARACFFLV 610
R S+ +G W K + L++ FF++ S A+ Y L F++
Sbjct: 152 RSSIQNGFWFFKYLILGALIVGFFFIRSESLATPLMYIGLIGGFMFIL 199
Score = 39 (13.7 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 9/19 (47%), Positives = 13/19 (68%), Frame = +1
Query: 574 ISKVGSGMFLLGQGMLLVD 630
I +G MF+L Q +L+VD
Sbjct: 189 IGLIGGFMFILIQLILIVD 207
>gi|5803193 ref|NP_006802.1| tumor differentially expressed 1; placental
transmembrane protein (mouse testicular tumor differentially
expressed) [Homo sapiens] >gi|11420844 ref|XP_009515.1| tumor
differentially expressed 1 [Homo sapiens]
>gi|2813966|emb|CAB09783.1| (Z97053) dJ179M20.2 (Tumour
differentially expressed 1(DIFF33)) [Homo sapiens]
>gi|4545219|gb|AAD22448.1| (AF112227) TDE homolog [Homo sapiens]
Length = 473
Frame 3 hits (HSPs): _____
Frame 2 hits (HSPs): _______________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 473
0 150 300 450
Plus Strand HSPs:
Score = 116 (40.8 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 35/141 (24%), Positives = 65/141 (46%), Frame = +2
Query: 155 ASCLASCCAACACDACRTVVSGISRRSARIAYCGLFAFSLVVAWIL-REVAAPLMESLPW 331
AS + C+ +C C + + R+ Y + S VV++I+ R+ ++ +P
Sbjct: 11 ASWVPCLCSGASCLLCSCCPNSKNSTVTRLIYAFILLLSTVVSYIMQRKEMETYLKKIPG 70
Query: 332 I--NHFKHTPSREWFETD--------AVLRVSLGNFLFFTILAVLMVGVKTQRDPRDSMH 481
FK + + D AV R+S +FF + ++LM VKT +D R ++H
Sbjct: 71 FCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVH 130
Query: 482 HGGWMMKIICWCLLVIFMFFV 544
+G W KI +++ F++
Sbjct: 131 NGFWFFKIAALIGIMVGSFYI 151
Score = 53 (18.7 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 13/47 (27%), Positives = 21/47 (44%), Frame = +3
Query: 630 FGHGWNDKWVGYEEQ----FWDMFIWWFPC--WMGHIAFQGVFFTFY 752
F H WN+ WV E+ W + F ++ I G+ +T+Y
Sbjct: 182 FAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYY 228
Score = 45 (15.8 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 12/36 (33%), Positives = 21/36 (58%), Frame = +1
Query: 523 GNLYVFRPNEIIS-FYETISKVGSGMFLLGQGMLLVD 630
G+ Y+ P S + + +G+ +F+L Q +LLVD
Sbjct: 147 GSFYI--PGGYFSSVWFVVGMIGAALFILIQLVLLVD 181
>gi|1293563|gb|AAB48858.1| (U49188) Diff33 gene product [Homo sapiens]
>gi|4960204|gb|AAD34641.1|AF153979_1 (AF153979) transmembrane
protein SBBI99 [Homo sapiens]
Length = 494
Frame 3 hits (HSPs): _____
Frame 2 hits (HSPs): _______________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 494
0 150 300 450
Plus Strand HSPs:
Score = 116 (40.8 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 35/141 (24%), Positives = 65/141 (46%), Frame = +2
Query: 155 ASCLASCCAACACDACRTVVSGISRRSARIAYCGLFAFSLVVAWIL-REVAAPLMESLPW 331
AS + C+ +C C + + R+ Y + S VV++I+ R+ ++ +P
Sbjct: 11 ASWVPCLCSGASCLLCSCCPNSKNSTVTRLIYAFILLLSTVVSYIMQRKEMETYLKKIPG 70
Query: 332 I--NHFKHTPSREWFETD--------AVLRVSLGNFLFFTILAVLMVGVKTQRDPRDSMH 481
FK + + D AV R+S +FF + ++LM VKT +D R ++H
Sbjct: 71 FCEGGFKIHEADINADKDCDVLVGYKAVYRISFAMAIFFFVFSLLMFKVKTSKDLRAAVH 130
Query: 482 HGGWMMKIICWCLLVIFMFFV 544
+G W KI +++ F++
Sbjct: 131 NGFWFFKIAALIGIMVGSFYI 151
Score = 53 (18.7 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 13/47 (27%), Positives = 21/47 (44%), Frame = +3
Query: 630 FGHGWNDKWVGYEEQ----FWDMFIWWFPC--WMGHIAFQGVFFTFY 752
F H WN+ WV E+ W + F ++ I G+ +T+Y
Sbjct: 182 FAHSWNESWVNRMEEGNPRLWYAALLSFTSAFYILSIICVGLLYTYY 228
Score = 45 (15.8 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 12/36 (33%), Positives = 21/36 (58%), Frame = +1
Query: 523 GNLYVFRPNEIIS-FYETISKVGSGMFLLGQGMLLVD 630
G+ Y+ P S + + +G+ +F+L Q +LLVD
Sbjct: 147 GSFYI--PGGYFSSVWFVVGMIGAALFILIQLVLLVD 181
>gi|310100|gb|AAA41097.1| (L20319) developmentally regulated protein [Rattus
norvegicus]
Length = 460
Frame 3 hits (HSPs): _____
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | 460
0 150 300 450
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 43/160 (26%), Positives = 67/160 (41%), Frame = +2
Query: 155 ASCLASCCAACACDACRTVVSGISR-RSARIAYCGLFAFSLVV----AWILREVAAPLME 319
A LA CC + C C + RS R Y LF F+LV+ + V + E
Sbjct: 7 AGQLACCCGSAGCALCCGCCPKFRQSRSTRFMY--LFYFTLVIIPCCVMMSPSVMKQMTE 64
Query: 320 SLPWINHF-KHTPSREWFET----DAVLRVSLGNFLFFTILAVLMVGVKTQRDPRDSMHH 484
+P+ F K + + E AV RV G FF + VL V + R S+H+
Sbjct: 65 HIPFFEDFCKGIKAGDTCENLVGYSAVYRVCFGMACFFFVFCVLTFKVNNSKSCRASIHN 124
Query: 485 GGWMMKIICWCLLVIFMFFV-QMRSSASMKQYQRLARACFFL 607
G W K++ + FF+ + ++ +Y + FF+
Sbjct: 125 GFWFFKLLLLGAMCSGAFFIPDQETFLNVWRYVGAVGSFFFI 166
Score = 49 (17.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 11/45 (24%), Positives = 18/45 (40%), Frame = +3
Query: 630 FGHGWNDKWVG--YEEQFW----DMFIWWFPCWMGHIAFQGVFFT 746
F H WN W + W + + + +G +A VF+T
Sbjct: 176 FAHKWNKNWTAGTVRNKLWYASLSLALIMYSIAVGGLALMAVFYT 220
>gi|9294097|dbj|BAB01949.1| (AP002048) gene_id:MXP5.3~unknown protein
[Arabidopsis thaliana]
Length = 528
Frame 2 hits (HSPs): __________
Frame 1 hits (HSPs): ____ __
__________________________________________________
Database sequence: | | | | | 528
0 150 300 450
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 30/110 (27%), Positives = 48/110 (43%), Frame = +2
Query: 215 SGISRRSARIAYCGLFAFSLVVAWILREVAAPLMESLPWINHFKHTPSRE-WFETDAVLR 391
+G + AR Y +F + ++AW R+ + + FK+ E TD VLR
Sbjct: 33 NGCNPWMARYVYGLIFLIANLLAWAARDYGRGALRK---VTRFKNCKGGENCLGTDGVLR 89
Query: 392 VSLGNFLFFTILAVLMVGVKTQRDPRDSMHHGGWMMKIICWCLLVIFMFFV 544
LF+ ++ + +G RD H G W +K+I W L I F +
Sbjct: 90 ------LFYFVMFLSTLGTSKTHSSRDRWHSGWWFVKLIMWPALTIIPFLL 134
Score = 53 (18.7 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 11/31 (35%), Positives = 19/31 (61%), Frame = +1
Query: 544 PNEIISFYETISKVGSGMFLLGQGMLLVDLV 636
P+ II Y I+ G+G+FLL Q + ++ +
Sbjct: 135 PSSIIHLYGEIAHFGAGVFLLIQLISVISFI 165
Score = 40 (14.1 bits), Expect = 0.00096, Sum P(3) = 0.00096
Identities = 7/17 (41%), Positives = 9/17 (52%), Frame = +1
Query: 676 SGTCLFGGSLVGWGTLH 726
+G F L+GW T H
Sbjct: 466 TGAMYFAMLLIGWNTHH 482
>gi|5853323|gb|AAD54422.1| (AF181686) membrane protein TMS1d [Drosophila
melanogaster]
Length = 465
Frame 2 hits (HSPs): _______ __________
__________________________________________________
Database sequence: | | | | | 465
0 150 300 450
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.0023, Sum P(2) = 0.0023
Identities = 24/79 (30%), Positives = 41/79 (51%), Frame = +2
Query: 380 AVLRVSLGNFLFFTILAVLMVGVKTQRDPRDSMHHGGWMMK-IICWCLLVIFMFFVQMRS 556
AV RV G FF +++++M+GVK+ RDPR + + W +K +IC+ + +F
Sbjct: 103 AVYRVCFGMACFFALMSLIMLGVKSSRDPRSHIQNNFWPLKFLICFGAAIGAIFIPDGSF 162
Query: 557 SASMKQYQRLARACFFLVK 613
+M + F LV+
Sbjct: 163 GPAMMWVGLIGGLAFILVQ 181
Score = 55 (19.4 bits), Expect = 0.0023, Sum P(2) = 0.0023
Identities = 21/58 (36%), Positives = 30/58 (51%), Frame = +2
Query: 152 AASCLASCCAACACDACRTVV-SGISRRSARIAYCGLFAFSLVVAWILREVA-AP-LMES 322
AA C A CC A C + S + S+R Y AF L+V +L +A +P L ++
Sbjct: 10 AAQC-AMCCGGTAASMCCSACPSCTNASSSRFMY----AFILLVGTVLGAIALSPGLQDT 64
Query: 323 L 325
L
Sbjct: 65 L 65
>gi|6755752 ref|NP_036162.1| tumor differentially expressed 1 [Mus musculus]
>gi|5853319|gb|AAD54420.1| (AF181684) membrane protein TMS-1 [Mus
musculus]
Length = 472
Frame 3 hits (HSPs): _______
Frame 2 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | 472
0 150 300 450
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.0025, Sum P(2) = 0.0025
Identities = 41/172 (23%), Positives = 74/172 (43%), Frame = +2
Query: 140 GSMWAASCLAS---C-CAACACDACRTVVSGISRRSARIAYCGLFAFSLVVAWILR-EVA 304
G++ A LAS C C+ +C C + R+ Y + +V+ I+ E
Sbjct: 2 GAVLAVFSLASWVPCLCSGASCLLCSCCPISKNSTVTRLIYAFILFLGTIVSCIMMTEGI 61
Query: 305 APLMESLPWINH----FKHTPSREWFETD------AVLRVSLGNFLFFTILAVLMVGVKT 454
++ +P K ++ + D AV R++ +FF +LM+ VKT
Sbjct: 62 QTQLKKIPGFCEGGFQIKMVDTKAEKDCDVLVGFKAVYRINFAVAIFFFAFFLLMLKVKT 121
Query: 455 QRDPRDSMHHGGWMMKIICWCLLVIFMFFVQMRSSASMKQYQRLARACFFLV 610
+DPR ++H+G W KI ++I F++ S + + A FF++
Sbjct: 122 SKDPRAAVHNGFWFFKIAAIIGIMIGSFYIPGGSFTEVWFVAGMLGASFFII 173
Score = 48 (16.9 bits), Expect = 0.0025, Sum P(2) = 0.0025
Identities = 15/59 (25%), Positives = 26/59 (44%), Frame = +3
Query: 636 HGWNDKWVGYEEQ----FWDMFIWWFPC--WMGHIAFQGVFFTFYAFGKD-GDSWLFIT 791
H WN+ WV E+ W + F ++ I F + + FY D ++ +FI+
Sbjct: 184 HSWNELWVNRMEEGNPRLWYAALLSFTSLFYILSIVFAALLYVFYTKPDDCTENKVFIS 242
>gi|7513851|pir||I53063 testicular tumor overexpressed protein - mouse
>gi|459890|gb|AAA74236.1| (L29441) overexpressed in testicular
tumors [Mus musculus]
Length = 393
Frame 3 hits (HSPs): ________
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 393
0 150 300
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.0032, Sum P(2) = 0.0032
Identities = 24/77 (31%), Positives = 41/77 (53%), Frame = +2
Query: 380 AVLRVSLGNFLFFTILAVLMVGVKTQRDPRDSMHHGGWMMKIICWCLLVIFMFFVQMRSS 559
AV R++ +FF +LM+ VKT +DPR ++H+G W KI ++I F++ S
Sbjct: 18 AVYRINFAVAIFFFAFFLLMLKVKTSKDPRAAVHNGFWFFKIAAIIGIMIGSFYIPGGSF 77
Query: 560 ASMKQYQRLARACFFLV 610
+ + A FF++
Sbjct: 78 TEVWFVAGMLGASFFII 94
Score = 48 (16.9 bits), Expect = 0.0032, Sum P(2) = 0.0032
Identities = 15/59 (25%), Positives = 26/59 (44%), Frame = +3
Query: 636 HGWNDKWVGYEEQ----FWDMFIWWFPC--WMGHIAFQGVFFTFYAFGKD-GDSWLFIT 791
H WN+ WV E+ W + F ++ I F + + FY D ++ +FI+
Sbjct: 105 HSWNELWVNRMEEGNPRLWYAALLSFTSLFYILSIVFAALLYVFYTKPDDCTENKVFIS 163
>gi|131044|sp|P80002|PRT2_SEPOF SPERMATID-SPECIFIC PROTEIN T2 [CONTAINS: SPERM
PROTAMINE SP2] >gi|102709|pir||B40973 spermatid-specific protein T2
precursor - common cuttlefish >gi|235523|gb|AAB19808.1|
spermatid-specific protein=variant T2 [cuttlefish, Peptide, 77 aa]
Length = 77
Frame -1 hits (HSPs): ______________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
__________________
Annotated Domains:
DOMO DM01168: PROTAMINEP1 1..76
Entrez Domain: HYDROPHOBIC. 1..21
Entrez Domain: ARG-RICH (HIGHLY BASIC). 22..77
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 19..76
__________________
Minus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.013, P = 0.013
Identities = 24/40 (60%), Positives = 25/40 (62%), Frame = -1
Query: 293 GGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPRS 174
GG RRRR RRR RSRR R+ P RR RRR RR RS
Sbjct: 20 GGRRRRRRSRRRRRSRRR-RSRS--PYRRRYRRRRRRRRS 56
Score = 78 (27.5 bits), Expect = 0.21, P = 0.19
Identities = 26/47 (55%), Positives = 27/47 (57%), Frame = -1
Query: 311 GERRPHGGSRRRRERRRRGRS--RRSWRNGG*FPIRRSCRRRM-RRPRS 174
G RR RRRR RRRR RS RR +R RRS RRR RR RS
Sbjct: 21 GRRRRRRSRRRRRSRRRRSRSPYRRRYRRRR--RRRRSRRRRRYRRRRS 67
Score = 73 (25.7 bits), Expect = 0.73, P = 0.52
Identities = 22/43 (51%), Positives = 24/43 (55%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRS-CRRRMRRPR 177
R P+ RRR RRRR R RR +R RRS RRR RR R
Sbjct: 40 RSPYRRRYRRRRRRRRSRRRRRYRR------RRSYSRRRYRRRR 77
>gi|131036|sp|P80001|PRT1_SEPOF SPERMATID-SPECIFIC PROTEIN T1 [CONTAINS: SPERM
PROTAMINE SP1] >gi|102708|pir||A40973 spermatid-specific protein T1
precursor - common cuttlefish >gi|235522|gb|AAB19807.1|
spermatid-specific protein=variant T1 [cuttlefish, Peptide, 78 aa]
Length = 78
Frame -1 hits (HSPs): ______________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 78
0 20 40 60
__________________
Annotated Domains:
Entrez Domain: HYDROPHOBIC. 1..21
Entrez Domain: ARG-RICH (HIGHLY BASIC). 22..78
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 19..77
__________________
Minus Strand HSPs:
Score = 87 (30.6 bits), Expect = 0.021, P = 0.021
Identities = 23/39 (58%), Positives = 24/39 (61%), Frame = -1
Query: 293 GGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPR 177
G RRRR RRRR RSRR R+ P RR RRR RR R
Sbjct: 21 GRRRRRRSRRRRRRSRRRSRS----PYRRRYRRRRRRRR 55
Score = 85 (29.9 bits), Expect = 0.035, P = 0.035
Identities = 25/48 (52%), Positives = 26/48 (54%), Frame = -1
Query: 311 GERRPHGGSRRRRERRRRGRS--RRSWRNGG*FPIRRSCRRRMRRPRS 174
G RR RRRR RRR RS RR +R RRS RRR RR RS
Sbjct: 21 GRRRRRRSRRRRRRSRRRSRSPYRRRYRRRRRRRRRRSRRRRYRRRRS 68
Score = 72 (25.3 bits), Expect = 0.94, P = 0.61
Identities = 23/43 (53%), Positives = 24/43 (55%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRS-CRRRMRRPR 177
RR RRR RRRR R RRS R + RRS RRR RR R
Sbjct: 37 RRSRSPYRRRYRRRRRRRRRRSRRRR--YRRRRSYSRRRYRRRR 78
>gi|1362586|pir||S56116 spermatid-specific protein T1 - longfin squid
>gi|1042188|gb|AAB34941.1| T1=testis-specific pro-protamine [Loligo
pealeii=squids, testis chromatin, Peptide, 79 aa]
Length = 79
Frame -1 hits (HSPs): ______________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 79
0 20 40 60
__________________
Annotated Domains:
DOMO DM01168: PROTAMINEP1 1..79
__________________
Minus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.035, P = 0.035
Identities = 25/46 (54%), Positives = 26/46 (56%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRS--RRSWRNGG*FPIRRSCRRRMRRPRS 174
RR RRRR RRRR RS RR +R RRS RRR RR RS
Sbjct: 24 RRRRSRRRRRRSRRRRSRSPYRRRYRRRRRRRRRRSRRRRYRRRRS 69
Score = 83 (29.2 bits), Expect = 0.059, P = 0.057
Identities = 22/38 (57%), Positives = 22/38 (57%), Frame = -1
Query: 290 GSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPR 177
G RRRR R RR R RRS R P RR RRR RR R
Sbjct: 20 GGRRRRRRSRR-RRRRSRRRRSRSPYRRRYRRRRRRRR 56
Score = 72 (25.3 bits), Expect = 0.94, P = 0.61
Identities = 23/43 (53%), Positives = 24/43 (55%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRS-CRRRMRRPR 177
RR RRR RRRR R RRS R + RRS RRR RR R
Sbjct: 38 RRSRSPYRRRYRRRRRRRRRRSRRRR--YRRRRSYSRRRYRRRR 79
>gi|1042189|gb|AAB34942.1| T2=testis-specific pro-protamine [Loligo
pealeii=squids, testis chromatin, Peptide, 79 aa]
Length = 79
Frame -1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | 79
0 20 40 60
Minus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.035, P = 0.035
Identities = 22/39 (56%), Positives = 22/39 (56%), Frame = -1
Query: 293 GGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPR 177
G RRRR RRRR R RR R P RR RRR RR R
Sbjct: 21 GRRRRRRSRRRRSRRRRRRRRSR-SPYRRRRRRRRRRSR 58
Score = 76 (26.8 bits), Expect = 0.34, P = 0.29
Identities = 25/48 (52%), Positives = 26/48 (54%), Frame = -1
Query: 311 GERRPHGGSRRR-RERRRRGRSRRSWRNGG*FPIRRSCRRRM-RRPRS 174
G RR RRR R RRRR RSR +R RRS RRR RR RS
Sbjct: 21 GRRRRRRSRRRRSRRRRRRRRSRSPYRRRRRRRRRRSRRRRRYRRRRS 68
Score = 74 (26.0 bits), Expect = 0.57, P = 0.43
Identities = 19/38 (50%), Positives = 22/38 (57%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRR 192
R P+ RRRR RRRR R RR +R + RR RRR
Sbjct: 43 RSPY--RRRRRRRRRRSRRRRRYRRRRSYSRRRRYRRR 78
Score = 70 (24.6 bits), Expect = 1.6, P = 0.79
Identities = 23/43 (53%), Positives = 25/43 (58%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSC--RRRMRRPR 177
R P+ RRRR RRRR R RR +R RRS RRR RR R
Sbjct: 43 RSPY--RRRRRRRRRRSRRRRRYRR------RRSYSRRRRYRRRR 79
>gi|123706|sp|P14402|HSP_COTJA SPERM HISTONE (PROTAMINE) >gi|104502|pir||A34356
protamine - Japanese quail >gi|213613|gb|AAA49498.1| (M30275)
protamine [Coturnix japonica]
Length = 57
Frame -1 hits (HSPs): ______________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 57
0 20 40
__________________
Annotated Domains:
DOMO DM01168: PROTAMINEP1 1..55
Entrez phosphorylation site: (POTENTIAL). 9
PFAM protamine_P1: Protamine P1 1..55
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2..55
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Minus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.035, P = 0.035
Identities = 25/43 (58%), Positives = 27/43 (62%), Frame = -1
Query: 305 RRPHGGSRRRRERRRR-GRSRRSWRNGG*FPIRRSCRRRMRRPR 177
RR RRR RRRR GRSRRS+R+ G RR RRR RR R
Sbjct: 14 RRRRRSRRRRSSRRRRYGRSRRSYRSVG-RRRRRYGRRRRRRRR 56
>gi|6320310 ref|NP_010390.1| Ydr105cp [Saccharomyces cerevisiae]
>gi|1078218|pir||S51256 probable membrane protein YDR105c - yeast
(Saccharomyces cerevisiae) >gi|633641|emb|CAA87681.1| (Z47746)
unknown [Saccharomyces cerevisiae] >gi|747880|emb|CAA88659.1|
(Z48758) unknown [Saccharomyces cerevisiae]
Length = 473
Frame 2 hits (HSPs): ______________
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 473
0 150 300 450
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.037, Sum P(2) = 0.037
Identities = 33/135 (24%), Positives = 58/135 (42%), Frame = +2
Query: 140 GSMWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFAFSLVVAWILREVAAPLME 319
GS + ASC CC+ ++ G S R+ Y + +++W V+ +
Sbjct: 13 GS-FVASCFGGCCSNLVTKTASSL--GSSSLGTRLLYAVWLLLNSLISW----VSYSANK 65
Query: 320 SLPWINHFKHTPSREWFETDAVLRVSLGNFLFFTILAVLMVGVKTQRDPRDSMHHGGWMM 499
S+ W F T L +LG ILA+++ GVK+ D R ++ + W +
Sbjct: 66 SILWPGKTCTGTGECGFFTVHRLNFALG--CLHLILALVLTGVKSTNDVRAALQNSWWSL 123
Query: 500 KIICWCLLVIFMFFV 544
K I + L++ F +
Sbjct: 124 KFILYLCLIVLSFVI 138
Score = 41 (14.4 bits), Expect = 0.037, Sum P(2) = 0.037
Identities = 12/30 (40%), Positives = 17/30 (56%), Frame = +1
Query: 544 PNEIISFYETISKVGSG-MFLLGQGMLLVD 630
PN+ F+ V SG +F+L +LLVD
Sbjct: 139 PNDFYIFFSKWVSVPSGAIFILVGLILLVD 168
>gi|102707|pir||S14085 protamine - common cuttlefish
Length = 57
Frame -1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 57
0 20 40
Minus Strand HSPs:
Score = 84 (29.6 bits), Expect = 0.046, P = 0.045
Identities = 22/36 (61%), Positives = 23/36 (63%), Frame = -1
Query: 284 RRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPR 177
RRRR RRRR RSRR R+ P RR RRR RR R
Sbjct: 3 RRRRSRRRRRRSRRRSRS----PYRRRYRRRRRRRR 34
Score = 79 (27.8 bits), Expect = 0.16, P = 0.15
Identities = 24/46 (52%), Positives = 25/46 (54%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRS--RRSWRNGG*FPIRRSCRRRMRRPRS 174
RR RRRR RRR RS RR +R RRS RRR RR RS
Sbjct: 2 RRRRRSRRRRRRSRRRSRSPYRRRYRRRRRRRRRRSRRRRYRRRRS 47
Score = 72 (25.3 bits), Expect = 0.94, P = 0.61
Identities = 23/43 (53%), Positives = 24/43 (55%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRS-CRRRMRRPR 177
RR RRR RRRR R RRS R + RRS RRR RR R
Sbjct: 16 RRSRSPYRRRYRRRRRRRRRRSRRRR--YRRRRSYSRRRYRRRR 57
>gi|11055101|gb|AAG27955.1| (AF187538) protamine P1 [Peradorcas concinna]
Length = 60
Frame -1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | 60
0 20 40
Minus Strand HSPs:
Score = 84 (29.6 bits), Expect = 0.046, P = 0.045
Identities = 24/41 (58%), Positives = 25/41 (60%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RR SRRRR RRRR RSRR R G + RR RRR RR
Sbjct: 21 RRSRYRSRRRRXRRRR-RSRRGRRRRG-YSRRRYSRRRRRR 59
>gi|11055113|gb|AAG27961.1| (AF187544) protamine P1 [Lagorchestes hirsutus]
Length = 65
Frame -1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | 65
0 20 40 60
Minus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.059, P = 0.057
Identities = 23/43 (53%), Positives = 25/43 (58%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPR 177
RR SRRRR RRR+ RSRR R G + RR RRR R R
Sbjct: 21 RRSRYRSRRRRYRRRQRRSRRGRRRG--YSRRRYSRRRYSRRR 61
Score = 78 (27.5 bits), Expect = 0.21, P = 0.19
Identities = 23/44 (52%), Positives = 25/44 (56%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNG---G*FPIRRSCRRRMRR 183
RR SRRRR RRR+ RSRR R G + RR RRR RR
Sbjct: 21 RRSRYRSRRRRYRRRQRRSRRGRRRGYSRRRYSRRRYSRRRRRR 64
>gi|2134213|pir||B58213 protamine I - American alligator
Length = 62
Frame -1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
Minus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.059, P = 0.057
Identities = 18/24 (75%), Positives = 19/24 (79%), Frame = -1
Query: 311 GERRPH-GGSRRRRERRRRGRSRR 243
G+RR H GGSRRRR RRRR R RR
Sbjct: 39 GQRRHHRGGSRRRRRRRRRRRRRR 62
Score = 68 (23.9 bits), Expect = 2.6, P = 0.92
Identities = 20/41 (48%), Positives = 20/41 (48%), Frame = -1
Query: 296 HGGSRRRRERRRRGRSR---RSWRNGG*FPIRRSCRRRMRR 183
HGG RRR RR G R R GG RR RRR RR
Sbjct: 21 HGGRYRRRRTRRSGGGRYGQRRHHRGGSRRRRRRRRRRRRR 61
Score = 65 (22.9 bits), Expect = 5.4, P = 1.0
Identities = 20/42 (47%), Positives = 20/42 (47%), Frame = -1
Query: 296 HGGSRRRRERRRRGRSR----RSWRNGG*FPIRRSCRRRMRR 183
HGG RRR RR G R R R G RR RRR RR
Sbjct: 21 HGGRYRRRRTRRSGGGRYGQRRHHRGGSRRRRRRRRRRRRRR 62
>gi|1170396|sp|P42138|HSP1_MACEU SPERM PROTAMINE P1 >gi|598423|gb|AAA74614.1|
(L35450) protamine P1 [Macropus eugenii] >gi|1582116|prf||2117429J
protamine P1 [Macropus eugenii]
Length = 62
Frame -1 hits (HSPs): _________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..60
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2..60
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Minus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.059, P = 0.057
Identities = 24/41 (58%), Positives = 25/41 (60%), Frame = -1
Query: 305 RRPHGGSRRRRER-RRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RR SRRRR R RRR RSRR R G + RR RRR RR
Sbjct: 21 RRSRYRSRRRRSRGRRRRRSRRGRRRRG-YSRRRYSRRRRRR 61
>gi|1170395|sp|P42137|HSP1_MACAG SPERM PROTAMINE P1 >gi|598425|gb|AAA74615.1|
(L35451) protamine P1 [Macropus agilis] >gi|1582117|prf||2117429K
protamine P1 [Macropus agilis]
Length = 61
Frame -1 hits (HSPs): _________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..59
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2..59
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Minus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.059, P = 0.057
Identities = 24/41 (58%), Positives = 25/41 (60%), Frame = -1
Query: 305 RRPHGGSRRRRER-RRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RR SRRRR R RRR RSRR R G + RR RRR RR
Sbjct: 21 RRSRYRSRRRRSRGRRRRRSRRGRRRG--YSRRRYSRRRRRR 60
>gi|11055093|gb|AAG27951.1| (AF187534) protamine P1 [Thylogale stigmatica]
Length = 62
Frame -1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
Minus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.059, P = 0.057
Identities = 24/41 (58%), Positives = 25/41 (60%), Frame = -1
Query: 305 RRPHGGSRRRRER-RRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RR SRRRR R RRR RSRR R G + RR RRR RR
Sbjct: 21 RRSRYRSRRRRYRGRRRRRSRRGRRRRG-YSCRRYSRRRRRR 61
>gi|1362587|pir||S56117 spermatid-specific protein T2 precursor - longfin squid
Length = 118
Frame -1 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | 118
0 50 100
Minus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.071, P = 0.068
Identities = 22/39 (56%), Positives = 22/39 (56%), Frame = -1
Query: 293 GGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPR 177
G RRRR RRRR R RR R P RR RRR RR R
Sbjct: 21 GRRRRRRSRRRRSRRRRRRRRSR-SPYRRRRRRRRRRSR 58
Score = 83 (29.2 bits), Expect = 0.29, P = 0.25
Identities = 23/44 (52%), Positives = 26/44 (59%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPRS 174
R P+ RRRR RRRR R RR +R + RR RRR RR RS
Sbjct: 43 RSPY--RRRRRRRRRRSRRRRRYRRRRSYSRRRRYRRR-RRSRS 83
Score = 76 (26.8 bits), Expect = 4.8, P = 0.99
Identities = 25/48 (52%), Positives = 26/48 (54%), Frame = -1
Query: 311 GERRPHGGSRRR-RERRRRGRSRRSWRNGG*FPIRRSCRRRM-RRPRS 174
G RR RRR R RRRR RSR +R RRS RRR RR RS
Sbjct: 21 GRRRRRRSRRRRSRRRRRRRRSRSPYRRRRRRRRRRSRRRRRYRRRRS 68
Score = 75 (26.4 bits), Expect = 7.1, P = 1.0
Identities = 23/46 (50%), Positives = 23/46 (50%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSW---RNGG*FPIRRSCRRRMRRPR 177
RR RRRR RRRR SRR R P RR RRR RR R
Sbjct: 52 RRRRRSRRRRRYRRRRSYSRRRRYRRRRRSRSPYRRRRRRRRRRSR 97
Score = 74 (26.0 bits), Expect = 9.6, P = 1.0
Identities = 19/38 (50%), Positives = 22/38 (57%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRR 192
R P+ RRRR RRRR R RR +R + RR RRR
Sbjct: 82 RSPY--RRRRRRRRRRSRRRRRYRRRRSYSRRRRYRRR 117
Score = 74 (26.0 bits), Expect = 9.6, P = 1.0
Identities = 25/44 (56%), Positives = 26/44 (59%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRM-RRPRS 174
RR SRRRR RRRR RSR +R RRS RRR RR RS
Sbjct: 64 RRRRSYSRRRRYRRRR-RSRSPYRRRRRRRRRRSRRRRRYRRRRS 107
>gi|11055091|gb|AAG27950.1| (AF187533) protamine P1 [Macropus parryi]
Length = 61
Frame -1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
Minus Strand HSPs:
Score = 82 (28.9 bits), Expect = 0.075, P = 0.073
Identities = 24/41 (58%), Positives = 25/41 (60%), Frame = -1
Query: 305 RRPHGGSRRRRER-RRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RR SRRRR R RRR RSRR R G + RR RRR RR
Sbjct: 21 RRSRYRSRRRRYRGRRRXRSRRGRRRG--YSRRRYSRRRRRR 60
>gi|7294110|gb|AAF49464.1| (AE003527) TMS1d gene product [Drosophila
melanogaster]
Length = 451
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | || 451
0 150 300 450
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.090, P = 0.086
Identities = 24/79 (30%), Positives = 41/79 (51%), Frame = +2
Query: 380 AVLRVSLGNFLFFTILAVLMVGVKTQRDPRDSMHHGGWMMK-IICWCLLVIFMFFVQMRS 556
AV RV G FF +++++M+GVK+ RDPR + + W +K +IC+ + +F
Sbjct: 89 AVYRVCFGMACFFALMSLIMLGVKSSRDPRSHIQNNFWPLKFLICFGAAIGAIFIPDGSF 148
Query: 557 SASMKQYQRLARACFFLVK 613
+M + F LV+
Sbjct: 149 GPAMMWVGLIGGLAFILVQ 167
>gi|6474399|dbj|BAA87249.1| (AB027945) Hypothetical protein
[Schizosaccharomyces pombe]
Length = 188
Frame 2 hits (HSPs): _____________________________
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | 188
0 50 100 150
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.091, Sum P(2) = 0.087
Identities = 26/109 (23%), Positives = 47/109 (43%), Frame = +2
Query: 224 SRRSARIAYCGLFAFSLVVAWILRE--VAAPLMESLPWINHFKHTPSREWFETDAVLRVS 397
S A I+Y L+ + +++W + + L + F + + AV R+S
Sbjct: 39 SNVGAVISYAVLYFVNSLLSWCMLSSWFNSKLSKLSAGYLQFDCQNDGKCYSVIAVHRLS 98
Query: 398 LGNFLFFTILAVLMVGVKTQRDPRDSMHHGGWMMKIICWCLLVIFMFFV 544
+F LA ++ T+ + +G W KI+ W +L IF FF+
Sbjct: 99 FTLVMFHLFLAFILSLCNTRSRVAIKIQNGLWPFKIVLWFVLGIFSFFI 147
Score = 57 (20.1 bits), Expect = 0.091, Sum P(2) = 0.087
Identities = 14/32 (43%), Positives = 21/32 (65%), Frame = +1
Query: 538 FRPNEIISFY-ETISKVGSGMFLLGQGMLLVD 630
F P + +SF+ IS +GS +F++ MLLVD
Sbjct: 146 FIPTKFLSFWGNIISVMGSALFIVYGLMLLVD 177
>gi|1582110|prf||2117429C protamine P1 [Caenolestes fuliginosus]
Length = 61
Frame -1 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
Minus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.098, P = 0.093
Identities = 22/41 (53%), Positives = 24/41 (58%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RR + SRRRR RR R R RR R G + RR RRR RR
Sbjct: 22 RRSYYRSRRRRYRRSRRRRRRGRRRG--YSRRRYSRRRRRR 60
Score = 68 (23.9 bits), Expect = 2.6, P = 0.92
Identities = 21/43 (48%), Positives = 22/43 (51%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPR 177
R H SR R RRR R RRS+ RRS RRR RR R
Sbjct: 3 RYRHSRSRSRSRYRRRRRRRRSYYRSRRRRYRRS-RRRRRRGR 44
>gi|1170398|sp|P42141|HSP1_MACRG SPERM PROTAMINE P1 >gi|598417|gb|AAA74609.1|
(L35328) protamine P1 [Wallabia bicolor] >gi|598421|gb|AAA74610.1|
(L35329) protamine P1 [Macropus rufogriseus]
>gi|11055105|gb|AAG27957.1| (AF187540) protamine P1 [Dorcopsis
veterum] >gi|1582118|prf||2117429L protamine P1 [Macropus
rufogriseus] >gi|1582119|prf||2117429M protamine P1 [Wallabia
bicolor]
Length = 62
Frame -1 hits (HSPs): _________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..60
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2..60
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Minus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.098, P = 0.093
Identities = 24/41 (58%), Positives = 25/41 (60%), Frame = -1
Query: 305 RRPHGGSRRRRER-RRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RR SRRRR R RRR RSRR R G + RR RRR RR
Sbjct: 21 RRSRYRSRRRRYRGRRRRRSRRGRRRRG-YSRRRYSRRRRRR 61
>gi|11055095|gb|AAG27952.1| (AF187535) protamine P1 [Petrogale xanthopus]
Length = 62
Frame -1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
Minus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.098, P = 0.093
Identities = 24/41 (58%), Positives = 25/41 (60%), Frame = -1
Query: 305 RRPHGGSRRRRER-RRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RR SRRRR R RRR RSRR R G + RR RRR RR
Sbjct: 21 RRSRYRSRRRRYRGRRRRRSRRGRRRRG-YSRRRYSRRRRRR 61
>gi|11055099|gb|AAG27954.1| (AF187537) protamine P1 [Dendrolagus goodfellowi]
>gi|11055107|gb|AAG27958.1| (AF187541) protamine P1 [Setonix
brachyurus] >gi|11055111|gb|AAG27960.1| (AF187543) protamine P1
[Onychogalea unguifera]
Length = 61
Frame -1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
Minus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.098, P = 0.093
Identities = 24/41 (58%), Positives = 25/41 (60%), Frame = -1
Query: 305 RRPHGGSRRRRER-RRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RR SRRRR R RRR RSRR R G + RR RRR RR
Sbjct: 21 RRSRYRSRRRRYRGRRRRRSRRGRRRG--YSRRRYSRRRRRR 60
>gi|11055109|gb|AAG27959.1| (AF187542) protamine P1 [Onychogalea fraenata]
Length = 61
Frame -1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
Minus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.098, P = 0.093
Identities = 24/41 (58%), Positives = 25/41 (60%), Frame = -1
Query: 305 RRPHGGSRRRRER-RRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RR SRRRR R RRR RSRR R G + RR RRR RR
Sbjct: 21 RRSRYRSRRRRYRGRRRRRSRRGRRRG--YSRRRYSRRRRRR 60
>gi|70792|pir||GACH protamine - chicken >gi|229596|prf||764186A protamine
[Gallus gallus]
Length = 65
Frame -1 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | 65
0 20 40 60
Minus Strand HSPs:
Score = 80 (28.2 bits), Expect = 0.13, P = 0.12
Identities = 24/43 (55%), Positives = 26/43 (60%), Frame = -1
Query: 311 GERRPHGGSRRRRERRRR--GRSRRSWRNGG*FPIRRSCRRRMRR 183
G RR RRRR RRRR G +RRS R+GG R RRR RR
Sbjct: 23 GRRR---SPRRRRSRRRRRYGSARRSRRSGGVRRRRYGSRRRRRR 64
Score = 66 (23.2 bits), Expect = 4.2, P = 0.99
Identities = 21/39 (53%), Positives = 21/39 (53%), Frame = -1
Query: 302 RPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMR 186
R G SR RR RRRR S RS R P RR RRR R
Sbjct: 4 RSRGRSRSRRTRRRR--SPRSGRRRS--PRRRRSRRRRR 38
>gi|462338|sp|P35305|HSP1_DIDMA SPERM PROTAMINE P1 >gi|1071970|pir||S34045
protamine - North American opossum >gi|294036|gb|AAA02812.1|
(L17007) protamine 1 [Didelphis marsupialis]
>gi|407063|emb|CAA52193.1| (X74044) protamine P1 [Didelphis
marsupialis] >gi|598253|gb|AAA74612.1| (L35448) protamine P1
[Monodelphis domestica] >gi|1582108|prf||2117429A protamine P1
[Didelphis marsupialis] >gi|1582109|prf||2117429B protamine P1
[Monodelphis domestica]
Length = 58
Frame -1 hits (HSPs): ____________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 58
0 20 40
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
DOMO DM01168: PROTAMINEP1 1..56
PFAM protamine_P1: Protamine P1 1..55
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2..56
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..12
__________________
Minus Strand HSPs:
Score = 80 (28.2 bits), Expect = 0.13, P = 0.12
Identities = 24/45 (53%), Positives = 25/45 (55%), Frame = -1
Query: 311 GERRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPR 177
G RR SRRRR RRRR RR R G + RRS RR RR R
Sbjct: 17 GRRRRRSRSRRRRSRRRR---RRRGRRGRGYH-RRSPHRRRRRRR 57
>gi|1170390|sp|P42131|HSP1_CAEFU SPERM PROTAMINE P1 >gi|598099|gb|AAA74598.1|
(L35332) protamine P1 [Caenolestes fuliginosus]
Length = 61
Frame -1 hits (HSPs): ________________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..59
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2..58
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Minus Strand HSPs:
Score = 79 (27.8 bits), Expect = 0.16, P = 0.15
Identities = 22/41 (53%), Positives = 23/41 (56%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RR SRRRR RR R R RR R G + RR RRR RR
Sbjct: 22 RRSRYRSRRRRYRRSRRRRRRGRRRG--YSRRRYSRRRRRR 60
Score = 63 (22.2 bits), Expect = 9.0, P = 1.0
Identities = 21/43 (48%), Positives = 21/43 (48%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPR 177
R H SR R RRR R RRS RRS RRR RR R
Sbjct: 3 RYRHSRSRSRSRYRRRRRRRRSRYRSRRRRYRRS-RRRRRRGR 44
>gi|102706|pir||S14086 protamine - common cuttlefish
Length = 56
Frame -1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 56
0 20 40
Minus Strand HSPs:
Score = 78 (27.5 bits), Expect = 0.21, P = 0.19
Identities = 20/35 (57%), Positives = 20/35 (57%), Frame = -1
Query: 278 RRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPRS 174
RR RRR R RRS R P RR RRR RR RS
Sbjct: 1 RRRRRRSRRRRRSRRRRSRSPYRRRYRRRRRRRRS 35
Score = 73 (25.7 bits), Expect = 0.73, P = 0.52
Identities = 22/43 (51%), Positives = 24/43 (55%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRS-CRRRMRRPR 177
R P+ RRR RRRR R RR +R RRS RRR RR R
Sbjct: 19 RSPYRRRYRRRRRRRRSRRRRRYRR------RRSYSRRRYRRRR 56
Score = 72 (25.3 bits), Expect = 0.94, P = 0.61
Identities = 25/45 (55%), Positives = 26/45 (57%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRS--RRSWRNGG*FPIRRSCRRRM-RRPRS 174
RR RRRR RRRR RS RR +R RRS RRR RR RS
Sbjct: 2 RRRRRSRRRRRSRRRRSRSPYRRRYRRRR--RRRRSRRRRRYRRRRS 46
>gi|12739150 ref|XP_007765.2| cell death regulator aven [Homo sapiens]
Length = 244
Frame -1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 244
0 50 100 150 200
Minus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.25, P = 0.22
Identities = 28/49 (57%), Positives = 29/49 (59%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRS--WRNGG*FPIRRSCR-RRMRRPRSMTPG 162
R GGS+RRR RRRRGR R W G P RRS R RR RRP PG
Sbjct: 48 RSRSGGSQRRRRRRRRGRRRTPGPWPWPG-LP-RRSRRPRRRRRPARQPPG 96
Score = 86 (30.3 bits), Expect = 3.5, P = 0.97
Identities = 27/49 (55%), Positives = 29/49 (59%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPI----RRSCR-RRMRRPRSMTPG 162
R GGS+RRR RRRRGR R G +P RRS R RR RRP PG
Sbjct: 48 RSRSGGSQRRRRRRRRGRRRTP----GPWPWPGLPRRSRRPRRRRRPARQPPG 96
>gi|2134209|pir||D58208 protamine II-3 - painted turtle
Length = 45
Frame -1 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | | 45
0 20 40
Minus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.27, P = 0.23
Identities = 23/44 (52%), Positives = 24/44 (54%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPRS 174
RR G RR R RRR GR RR R G R+ RRR RR RS
Sbjct: 6 RRGGRGGRRGRRRRRHGRRRRG-RRGR----ERTRRRRRRRRRS 44
>gi|2134211|pir||F58208 protamine II-5 - painted turtle
Length = 47
Frame -1 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | 47
0 20 40
Minus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.27, P = 0.23
Identities = 22/46 (47%), Positives = 25/46 (54%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPRSMT 168
RR G RR R RRR GR RR R+ R+ RRR RR R M+
Sbjct: 6 RRGGRGGRRGRRRRRHGRRRRGRRSR-----ERTGRRRRRRRRRMS 46
>gi|1170397|sp|P42139|HSP1_MACGI SPERM PROTAMINE P1 >gi|598419|gb|AAA74604.1|
(L35333) protamine P1 [Macropus giganteus]
>gi|1582115|prf||2117429H protamine P1 [Macropus giganteus]
Length = 61
Frame -1 hits (HSPs): _________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..59
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2..59
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Minus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.34, P = 0.29
Identities = 23/40 (57%), Positives = 24/40 (60%), Frame = -1
Query: 305 RRPHGGSRRRRER-RRRGRSRRSWRNGG*FPIRRSCRRRMR 186
RR SRRRR R RRR RSRR R G + RR RRR R
Sbjct: 21 RRSRYRSRRRRYRGRRRRRSRRGRRRRG-YSRRRYSRRRRR 60
>gi|2134208|pir||C58208 protamine II-2 - painted turtle
Length = 45
Frame -1 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | | 45
0 20 40
Minus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.34, P = 0.29
Identities = 22/44 (50%), Positives = 23/44 (52%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPRS 174
RR G RR R RRR GR RR R R+ RRR RR RS
Sbjct: 6 RRGGRGGRRGRRRRRHGRRRRGHRGR-----ERTRRRRRRRRRS 44
>gi|11055117|gb|AAG27963.1| (AF187546) protamine P1 [Bettongia penicillata]
Length = 62
Frame -1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
Minus Strand HSPs:
Score = 75 (26.4 bits), Expect = 0.44, P = 0.36
Identities = 23/41 (56%), Positives = 24/41 (58%), Frame = -1
Query: 305 RRPHGGSRRRRER-RRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RR SRRRR R RR RSRR R G + RR RRR RR
Sbjct: 21 RRSRYRSRRRRYRGSRRRRSRRRGRRRG-YSRRRYSRRRRRR 61
Score = 64 (22.5 bits), Expect = 7.0, P = 1.0
Identities = 19/34 (55%), Positives = 19/34 (55%), Frame = -1
Query: 284 RRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RRRR RR R RSRR G RR RRR RR
Sbjct: 16 RRRRRRRSRYRSRRRRYRGS---RRRRSRRRGRR 46
>gi|11055103|gb|AAG27956.1| (AF187539) protamine P1 [Dorcopsulus vanheurni]
Length = 62
Frame -1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
Minus Strand HSPs:
Score = 75 (26.4 bits), Expect = 0.44, P = 0.36
Identities = 23/41 (56%), Positives = 24/41 (58%), Frame = -1
Query: 305 RRPHGGSRRRRER-RRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RR SRRR R RRR RSRR R G + RR RRR RR
Sbjct: 21 RRSRYRSRRRXYRGRRRRRSRRGRRRRG-YSRRRYSRRRRRR 61
>gi|2134207|pir||B58208 protamine II-1 - painted turtle
Length = 45
Frame -1 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | | 45
0 20 40
Minus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.57, P = 0.43
Identities = 21/41 (51%), Positives = 22/41 (53%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRR 183
RR G RR R RRR GR RR R+ RR RRR RR
Sbjct: 6 RRGGRGGRRGRRRRRHGRRRRGRRSRE--QTRRRRRRRRRR 44
Score = 73 (25.7 bits), Expect = 0.73, P = 0.52
Identities = 21/43 (48%), Positives = 22/43 (51%), Frame = -1
Query: 305 RRPHGGSRRRRERRRRGRSRRSWRNGG*FPIRRSCRRRMRRPR 177
RR G RR R RRR GR RR R+ R RRR RR R
Sbjct: 6 RRGGRGGRRGRRRRRHGRRRRGRRS------REQTRRRRRRRR 42
WARNING: HSPs involving 60 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=6.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.338 0.147 0.561
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.337 0.141 0.502
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.339 0.154 0.511
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.351 0.159 0.570
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.334 0.145 0.494
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.339 0.145 0.465
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 276 276 10. 79 3 12 22 0.098 36
33 0.12 39
+2 0 276 276 10. 79 3 12 22 0.098 36
33 0.12 39
+1 0 276 276 10. 79 3 12 22 0.098 36
33 0.12 39
-1 0 276 276 10. 79 3 12 22 0.098 36
33 0.12 39
-2 0 276 276 10. 79 3 12 22 0.098 36
33 0.12 39
-3 0 276 276 10. 79 3 12 22 0.098 36
33 0.12 39
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 110
No. of states in DFA: 595 (59 KB)
Total size of DFA: 309 KB (320 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 331.63u 1.14s 332.77t Elapsed: 00:01:20
Total cpu time: 331.71u 1.18s 332.89t Elapsed: 00:01:20
Start: Wed Jan 16 18:28:05 2002 End: Wed Jan 16 18:29:25 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000