Reference SNP(refSNP) Cluster Report: rs34179714

Reference SNP(refSNP) Cluster Report: rs34179714

refSNP ID: rs34179714
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	126/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_004104.4:c.3306C>G
NP_004095.4:p.A1102A
NT_010663.14:g.259153G>C

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss44042729 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs34179714 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss44042729	ABI\|hCV372283		fwd/	C/G	gggcacctgctgctcctgctgccgccgcgg	gccgactcagtgtggagcccggagatgtgg	07/18/05	07/18/05	126	Genomic			unknown

Fasta sequence (Legend)

 AAGGCTGGGG GCTGGGGGAG GGAGGGAGGC CGCCATCGTG AGCTCCGGCC GGAGGGTTGG
 GCTAGGGTTG CTGACCCCAA AGGGGGCCCC GTGGAGAAGC AAGTCTGGGG TCAACGTGAG
 GGGAGGCGAT CGCTCCTCAT CGCCAGAGGT GTCCGAAGCC AGCAGGGCTG GGACCTCACC
 CTTGCACAGT TGCAGCTCCT CCTGCAGGGC AGCGCGCTCA GACAGGCACC CCTCCTCCGT
 GTGGGGAGTG AAGCAAAACT TCTCCAGGAT GGGCACCTGC TGCTCCTGCT GCCGCCGCGG
 S
 GCCGACTCAG TGTGGAGCCC GGAGATGTGG ACGCCTCCCG CCACTGTGAC CCTCAGCCAC
 CTGCTCACCA CCACGTCAGC CACTGTGGGG ACAGGCTGGG TGAGTGCGGC ATACTTGGGT
 GGGGGCACTG GGCTGGGGCT GGGGCGGGGC TACCTTGGGC CTTGTCCTGC AGTGTGTACA
 GCTTCTGCCT GTGGGTGGCA GGGTCGATGT GGATGGCGGT GACACGGGTG GGCAGGTACA
 GGCCGTGCTT GGCCGAGCCC AGGATGGACA TCTGCAGCAT GGTGTCCATG AAGCTCACCC

GeneView

GeneView via analysis of contig annotation: FASN fatty acid synthase

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_010663->NM_004104

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	mRNA pos	Function	dbSNP allele	Protein residue	Codon pos	Amino acid pos


reference	NT_010663->NM_004104->NP_004095	259154	reverse	3423	synonymous	G	Ala [A]	3	1102
					contig reference	C	Ala [A]	3	1102

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs34179714 maps exactly once on NCBI human chromosome 17

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
17	NW_001838459.1	291930	75445001	plus	G	alt_assembly_8	HuRef	HuRef	view	300
17	NW_926918.1	17144795	76639394	plus	G	alt_assembly_1	Celera	Celera	view	300
17	NT_010663.14	259154	77638336	plus	G	ref_assembly	reference	reference	view	300

NCBI Resource Links

Submitter-Referenced

dbSNP Blast Analysis
NCBI RefSeq NM (mRNA):
NM_004104.4

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .