BLASTP 2.2.4 [Aug-26-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SAG1895
(204 letters)
Database: nr
1,487,057 sequences; 479,114,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22538033|ref|NP_688884.1| polypeptide deformylase [Streptococ... 394 e-109
gi|15903353|ref|NP_358903.1| Peptide deformylase, N-formylmethio... 341 3e-93
gi|15901306|ref|NP_345910.1| polypeptide deformylase [Streptococ... 341 5e-93
gi|33357294|pdb|1LM6|A Chain A, Crystal Structure Of Peptide Def... 336 2e-91
gi|19746868|ref|NP_608004.1| putative polypeptide deformylase [S... 329 2e-89
gi|15675756|ref|NP_269930.1| putative polypeptide deformylase [S... 328 3e-89
gi|24378660|ref|NP_720615.1| putative polypeptide deformylase [S... 322 3e-87
gi|15672542|ref|NP_266716.1| polypeptide deformylase [Lactococcu... 268 5e-71
gi|806487|gb|AAC41454.1| ORF211; putative 267 6e-71
gi|22990452|ref|ZP_00035306.1| hypothetical protein [Enterococcu... 264 7e-70
gi|29377524|ref|NP_816678.1| polypeptide deformylase [Enterococc... 259 2e-68
gi|13637693|sp|Q48661|DEF_LACLA Peptide deformylase (PDF) (Polyp... 258 4e-68
gi|16803091|ref|NP_464576.1| similar to formylmethionine deformy... 213 1e-54
gi|16800112|ref|NP_470380.1| similar to formylmethionine deformy... 213 2e-54
gi|28378768|ref|NP_785660.1| formylmethionine deformylase [Lacto... 205 4e-52
gi|6225247|sp|O31410|DEF2_BACST Peptide deformylase 2 (PDF 2) (P... 196 2e-49
gi|21402026|ref|NP_658011.1| Pep_deformylase, Polypeptide deform... 191 9e-48
gi|30022062|ref|NP_833693.1| Polypeptide deformylase [Bacillus c... 190 1e-47
gi|23098865|ref|NP_692331.1| formylmethionine deformylase [Ocean... 184 7e-46
gi|23002612|ref|ZP_00046287.1| hypothetical protein [Lactobacill... 177 7e-44
gi|15615221|ref|NP_243524.1| formylmethionine deformylase [Bacil... 174 9e-43
gi|15924081|ref|NP_371615.1| formylmethionine deformylase homolo... 174 1e-42
gi|16078520|ref|NP_389339.1| similar to formylmethionine deformy... 173 1e-42
gi|21282703|ref|NP_645791.1| ORFID:MW0974~formylmethionine defor... 173 1e-42
gi|33357292|pdb|1LM4|A Chain A, Structure Of Peptide Deformylase... 172 4e-42
gi|27467707|ref|NP_764344.1| formylmethionine deformylase [Staph... 171 7e-42
gi|23038455|ref|ZP_00070604.1| hypothetical protein [Oenococcus ... 169 2e-41
gi|21730762|pdb|1LMH|A Chain A, Crystal Structure Of S. Aureus P... 162 2e-39
gi|23023575|ref|ZP_00062809.1| hypothetical protein [Leuconostoc... 108 4e-23
gi|15829160|ref|NP_326520.1| POLYPEPTIDE DEFORMYLASE 2 (PDF 2) (... 107 2e-22
gi|7109689|gb|AAF36760.1| polypeptide deformylase [Mycoplasma ga... 103 1e-21
gi|31544845|ref|NP_853423.1| Def [Mycoplasma gallisepticum R] >g... 102 4e-21
gi|12044958|ref|NP_072768.1| polypeptide deformylase (def) [Myco... 95 6e-19
gi|2507258|sp|P47352|DEF_MYCGE Peptide deformylase (PDF) (Polype... 95 6e-19
gi|26554017|ref|NP_757951.1| polypeptide deformylase [Mycoplasma... 95 9e-19
gi|13358028|ref|NP_078302.1| polypeptide deformylase [Ureaplasma... 89 3e-17
gi|24215138|ref|NP_712619.1| Polypeptide deformylase [Leptospira... 86 3e-16
gi|13507984|ref|NP_109933.1| polypeptide deformylase, probably e... 84 1e-15
gi|17229499|ref|NP_486047.1| polypeptide deformylase [Nostoc sp.... 78 7e-14
gi|23613598|ref|NP_704619.1| formylmethionine deformylase, putat... 78 1e-13
gi|23124904|ref|ZP_00106862.1| hypothetical protein [Nostoc punc... 77 1e-13
gi|1169265|sp|P43522|DEF_THETH Peptide deformylase (PDF) (Polype... 76 3e-13
gi|1072950|pir||A55228 fms protein homolog - Thermus aquaticus (... 76 3e-13
gi|17433051|sp|Q9FV53|DEFM_ARATH Peptide deformylase, mitochondr... 75 6e-13
gi|18394237|ref|NP_563974.1| peptide deformylase-related protein... 75 7e-13
gi|15603424|ref|NP_246498.1| Def [Pasteurella multocida] >gnl|BL... 75 7e-13
gi|23487628|gb|EAA21104.1| polypeptide deformylase, putative [Pl... 75 8e-13
gi|17433049|sp|Q9FUZ0|DEFM_LYCES Peptide deformylase, mitochondr... 74 1e-12
gi|15639744|ref|NP_219194.1| polypeptide deformylase (def) [Trep... 73 2e-12
gi|23131065|ref|ZP_00112850.1| hypothetical protein [Prochloroco... 72 5e-12
gi|23001158|ref|ZP_00045069.1| hypothetical protein [Magnetococc... 72 7e-12
gi|23016537|ref|ZP_00056292.1| hypothetical protein [Magnetospir... 72 7e-12
gi|16272565|ref|NP_438782.1| polypeptide deformylase [Haemophilu... 71 1e-11
gi|20150600|pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase ... 71 1e-11
gi|21674275|ref|NP_662340.1| polypeptide deformylase [Chlorobium... 70 2e-11
gi|22973042|ref|ZP_00019888.1| hypothetical protein [Chloroflexu... 70 3e-11
gi|23121947|ref|ZP_00104082.1| hypothetical protein [Prochloroco... 69 4e-11
gi|32266068|ref|NP_860100.1| N-formylmethionyl-tRNA deformylase ... 69 4e-11
gi|31196413|ref|XP_307154.1| ENSANGP00000012713 [Anopheles gambi... 69 4e-11
gi|31202945|ref|XP_310421.1| ENSANGP00000017891 [Anopheles gambi... 69 4e-11
gi|32041132|ref|ZP_00138715.1| hypothetical protein [Pseudomonas... 69 5e-11
gi|25029133|ref|NP_739187.1| putative polypeptide deformylase [C... 69 6e-11
gi|23113907|ref|ZP_00099244.1| hypothetical protein [Desulfitoba... 69 7e-11
gi|23000048|ref|ZP_00043996.1| hypothetical protein [Magnetococc... 69 7e-11
gi|29345830|ref|NP_809333.1| peptide deformylase(PDF) [Bacteroid... 68 8e-11
gi|32307482|gb|AAP79146.1| peptide deformylase [Bigelowiella nat... 68 8e-11
gi|23054279|ref|ZP_00080446.1| hypothetical protein [Geobacter m... 68 1e-10
gi|23137795|ref|ZP_00119499.1| hypothetical protein [Cytophaga h... 67 1e-10
gi|23132076|ref|ZP_00113861.1| hypothetical protein [Prochloroco... 67 2e-10
gi|32029937|ref|ZP_00132881.1| hypothetical protein [Haemophilus... 67 2e-10
gi|17433050|sp|Q9FUZ2|DEFC_ARATH Peptide deformylase, chloroplas... 66 3e-10
gi|32477751|ref|NP_870745.1| peptide deformylase [Pirellula sp.]... 66 3e-10
gi|27262480|gb|AAN87521.1| Polypeptide deformylase [Heliobacillu... 66 4e-10
gi|15605076|ref|NP_219861.1| Polypeptide Deformylase [Chlamydia ... 65 5e-10
gi|22966785|ref|ZP_00014380.1| hypothetical protein [Rhodospiril... 65 5e-10
gi|15241461|ref|NP_196970.1| peptide deformylase [Arabidopsis th... 65 5e-10
gi|21553551|gb|AAM62644.1| Formylmethionine deformylase [Arabido... 65 5e-10
gi|23041413|ref|ZP_00072871.1| hypothetical protein [Trichodesmi... 65 6e-10
gi|16330073|ref|NP_440801.1| polypeptide deformylase [Synechocys... 65 7e-10
gi|15644409|ref|NP_229461.1| polypeptide deformylase [Thermotoga... 65 7e-10
gi|23467476|ref|ZP_00123057.1| hypothetical protein [Haemophilus... 65 8e-10
gi|21233177|ref|NP_639094.1| polypeptide deformylase [Xanthomona... 65 8e-10
gi|22990872|ref|ZP_00035659.1| hypothetical protein [Enterococcu... 65 9e-10
gi|15964172|ref|NP_384525.1| PROBABLE POLYPEPTIDE DEFORMYLASE PR... 65 9e-10
gi|23396548|sp|Q92SH6|DEF_RHIME Peptide deformylase (PDF) (Polyp... 65 9e-10
gi|32491245|ref|NP_871499.1| def [Wigglesworthia glossinidia end... 64 1e-09
gi|24645728|ref|NP_731495.1| CG31373-PA [Drosophila melanogaster... 64 1e-09
gi|21219403|ref|NP_625182.1| polypeptide deformylase. [Streptomy... 64 1e-09
gi|15290077|dbj|BAB63770.1| putative peptide deformylase [Oryza ... 64 1e-09
gi|11641243|ref|NP_071736.1| peptide deformylase-like protein [H... 64 2e-09
gi|18043802|gb|AAH19912.1|AAH19912 peptide deformylase-like prot... 64 2e-09
gi|21244525|ref|NP_644107.1| polypeptide deformylase [Xanthomona... 64 2e-09
gi|22979944|ref|ZP_00025658.1| hypothetical protein [Ralstonia m... 63 2e-09
gi|15676038|ref|NP_273168.1| polypeptide deformylase [Neisseria ... 63 3e-09
gi|15835247|ref|NP_297006.1| polypeptide deformylase [Chlamydia ... 63 3e-09
gi|26991243|ref|NP_746668.1| polypeptide deformylase [Pseudomona... 63 4e-09
gi|23056001|ref|ZP_00082067.1| hypothetical protein [Geobacter m... 62 4e-09
gi|15791578|ref|NP_281401.1| polypeptide deformylase [Campylobac... 62 5e-09
gi|20146289|dbj|BAB89071.1| peptide deformylase-like protein [Or... 62 5e-09
gi|15600920|ref|NP_232550.1| polypeptide deformylase [Vibrio cho... 62 6e-09
gi|24645726|ref|NP_731494.1| CG31278-PA [Drosophila melanogaster... 62 6e-09
gi|33152876|ref|NP_874229.1| peptide deformylase; formylmethioni... 62 7e-09
gi|19553932|ref|NP_601934.1| N-formylmethionyl-tRNA deformylase ... 62 8e-09
gi|23132998|ref|ZP_00114772.1| hypothetical protein [Synechococc... 61 9e-09
gi|19704492|ref|NP_604054.1| Polypeptide deformylase [Fusobacter... 61 1e-08
gi|29833891|ref|NP_828525.1| putative polypeptide deformylase [S... 61 1e-08
gi|15640078|ref|NP_229705.1| polypeptide deformylase [Vibrio cho... 61 1e-08
gi|29655164|ref|NP_820856.1| polypeptide deformylase, putative [... 61 1e-08
gi|23042035|ref|ZP_00073449.1| hypothetical protein [Trichodesmi... 61 1e-08
gi|33357295|pdb|1LME|A Chain A, Crystal Structure Of Peptide Def... 60 1e-08
gi|22965974|ref|ZP_00013572.1| hypothetical protein [Rhodospiril... 60 2e-08
gi|28868804|ref|NP_791423.1| polypeptide deformylase [Pseudomona... 60 2e-08
gi|17230571|ref|NP_487119.1| polypeptide deformylase [Nostoc sp.... 60 2e-08
gi|22985226|ref|ZP_00030350.1| hypothetical protein [Burkholderi... 60 2e-08
gi|23471104|ref|ZP_00126435.1| hypothetical protein [Pseudomonas... 60 3e-08
gi|27367269|ref|NP_762796.1| N-formylmethionyl-tRNA deformylase ... 59 4e-08
gi|23009516|ref|ZP_00050535.1| hypothetical protein [Magnetospir... 59 4e-08
gi|22299219|ref|NP_682466.1| polypeptide deformylase [Thermosyne... 59 5e-08
gi|15807421|ref|NP_296154.1| polypeptide deformylase [Deinococcu... 59 5e-08
gi|15895739|ref|NP_349088.1| N-formylmethionyl-tRNA deformylase ... 59 6e-08
gi|18310726|ref|NP_562660.1| polypeptide deformylase [Clostridiu... 59 6e-08
gi|28899816|ref|NP_799421.1| polypeptide deformylase [Vibrio par... 59 7e-08
gi|15594411|ref|NP_212199.1| polypeptide deformylase (def) [Borr... 58 7e-08
gi|23335362|ref|ZP_00120599.1| hypothetical protein [Bifidobacte... 58 8e-08
gi|22994874|ref|ZP_00039362.1| hypothetical protein [Xylella fas... 58 8e-08
gi|3023625|sp|P94601|DEF_FREDI Peptide deformylase (PDF) (Polype... 58 9e-08
gi|27887934|gb|EAA25001.1| Polypeptide deformylase [Fusobacteriu... 58 1e-07
gi|15837528|ref|NP_298216.1| polypeptide deformylase [Xylella fa... 58 1e-07
gi|27364480|ref|NP_760008.1| N-formylmethionyl-tRNA deformylase ... 58 1e-07
gi|22996949|ref|ZP_00041190.1| hypothetical protein [Xylella fas... 58 1e-07
gi|23058834|ref|ZP_00083857.1| hypothetical protein [Pseudomonas... 57 1e-07
gi|17988608|ref|NP_541241.1| POLYPEPTIDE DEFORMYLASE [Brucella m... 57 1e-07
gi|23396543|sp|Q8YDB4|DEF_BRUME Peptide deformylase (PDF) (Polyp... 57 1e-07
gi|23473190|ref|ZP_00128486.1| hypothetical protein [Desulfovibr... 57 1e-07
gi|22975929|ref|ZP_00021852.1| hypothetical protein [Ralstonia m... 57 1e-07
gi|15606030|ref|NP_213407.1| polypeptide deformylase [Aquifex ae... 57 1e-07
gi|18310615|ref|NP_562549.1| polypeptide deformylase [Clostridiu... 57 2e-07
gi|15887717|ref|NP_353398.1| AGR_C_640p [Agrobacterium tumefacie... 57 2e-07
gi|22958319|ref|ZP_00005993.1| hypothetical protein [Rhodobacter... 57 2e-07
gi|22958320|ref|ZP_00005994.1| hypothetical protein [Rhodobacter... 57 3e-07
gi|24114564|ref|NP_709074.1| peptide deformylase [Shigella flexn... 56 3e-07
gi|2098360|pdb|1DEF| Peptide Deformylase Catalytic Core (Residu... 56 3e-07
gi|2981897|pdb|2DEF| Peptide Deformylase Catalytic Core (Residu... 56 3e-07
gi|16762876|ref|NP_458493.1| polypeptide deformylase [Salmonella... 56 3e-07
gi|17433052|sp|Q9FV54|DEFC_LYCES Peptide deformylase, chloroplas... 56 4e-07
gi|33239533|ref|NP_874475.1| N-formylmethionyl-tRNA deformylase ... 56 4e-07
gi|4699740|pdb|1ICJ|A Chain A, Pdf Protein Is Crystallized As Ni... 56 4e-07
gi|15803814|ref|NP_289848.1| peptide deformylase [Escherichia co... 56 4e-07
gi|3660174|pdb|1DFF| Peptide Deformylase 56 4e-07
gi|15892003|ref|NP_359717.1| polypeptide deformylase [EC:3.5.1.3... 55 5e-07
gi|16766695|ref|NP_462310.1| peptide deformylase [Salmonella typ... 55 5e-07
gi|28262346|gb|EAA25850.1| polypeptide deformylase [Rickettsia s... 55 5e-07
gi|17546118|ref|NP_519520.1| PUTATIVE POLYPEPTIDE DEFORMYLASE PR... 55 5e-07
gi|30249715|ref|NP_841785.1| Formylmethionine deformylase [Nitro... 55 5e-07
gi|33519686|ref|NP_878518.1| polypeptide deformylase [Candidatus... 55 6e-07
gi|21223589|ref|NP_629368.1| putative polypeptide deformylase [S... 55 6e-07
gi|17544789|ref|NP_518191.1| PROBABLE POLYPEPTIDE DEFORMYLASE PR... 55 6e-07
gi|28572612|ref|NP_789392.1| peptide deformylase [Tropheryma whi... 55 6e-07
gi|23396567|sp|Q92JI7|DEF2_RICCN Peptide deformylase 2 (PDF 2) (... 55 9e-07
gi|15894999|ref|NP_348348.1| N-formylmethionyl-tRNA deformylase ... 55 9e-07
gi|31195299|ref|XP_306597.1| ENSANGP00000001350 [Anopheles gambi... 55 1e-06
gi|28493277|ref|NP_787438.1| formylmethionine deformylase [Troph... 54 1e-06
gi|15604081|ref|NP_220596.1| METHIONYL-TRNA DEFORMYLASE (def) [R... 54 1e-06
gi|20807950|ref|NP_623121.1| N-formylmethionyl-tRNA deformylase ... 54 2e-06
gi|6685122|gb|AAF23793.1|AF213822_8 polypeptide deformylase [Zym... 54 2e-06
gi|30249917|ref|NP_841987.1| Formylmethionine deformylase [Nitro... 54 2e-06
gi|28867417|ref|NP_790036.1| polypeptide deformylase [Pseudomona... 54 2e-06
gi|16120580|ref|NP_403893.1| polypeptide deformylase [Yersinia p... 54 2e-06
gi|27383220|ref|NP_774749.1| polypeptide deformylase [Bradyrhizo... 54 2e-06
gi|24371632|ref|NP_715674.1| polypeptide deformylase [Shewanella... 54 2e-06
gi|15617090|ref|NP_240303.1| polypeptide deformylase [Buchnera a... 54 2e-06
gi|4098215|gb|AAD09580.1| N-formylmethionylaminoacyl-tRNA deform... 54 2e-06
gi|15645412|ref|NP_207586.1| polypeptide deformylase (def) [Heli... 54 2e-06
gi|29833668|ref|NP_828302.1| putative polypeptide deformylase [S... 54 2e-06
gi|23469370|ref|ZP_00124704.1| hypothetical protein [Pseudomonas... 53 2e-06
gi|16078635|ref|NP_389454.1| polypeptide deformylase [Bacillus s... 53 2e-06
gi|15611796|ref|NP_223447.1| POLYPEPTIDE DEFORMYLASE [Helicobact... 53 3e-06
gi|21230162|ref|NP_636079.1| peptide deformylase [Xanthomonas ca... 53 3e-06
gi|13474065|ref|NP_105633.1| N-formylmethionylaminoacyl-tRNA def... 53 4e-06
gi|26986813|ref|NP_742238.1| polypeptide deformylase [Pseudomona... 52 5e-06
gi|23336215|ref|ZP_00121440.1| hypothetical protein [Bifidobacte... 52 6e-06
gi|28900639|ref|NP_800294.1| polypeptide deformylase [Vibrio par... 52 7e-06
gi|28210907|ref|NP_781851.1| polypeptide deformylase [Clostridiu... 52 7e-06
gi|27904914|ref|NP_778040.1| polypeptide deformylase [Buchnera a... 52 7e-06
gi|25028276|ref|NP_738330.1| putative polypeptide deformylase [C... 52 8e-06
gi|23063843|ref|ZP_00088347.1| hypothetical protein [Pseudomonas... 52 8e-06
gi|21672742|ref|NP_660809.1| polypeptide deformylase [Buchnera a... 51 9e-06
gi|22982955|ref|ZP_00028172.1| hypothetical protein [Burkholderi... 51 9e-06
gi|23104589|ref|ZP_00091051.1| hypothetical protein [Azotobacter... 51 1e-05
gi|23466247|ref|NP_696850.1| polypeptide deformylase [Bifidobact... 51 1e-05
gi|15674896|ref|NP_269070.1| putative polypeptide deformylase [S... 51 1e-05
gi|27659066|ref|XP_214675.1| similar to peptide deformylase-like... 51 1e-05
gi|23110210|ref|ZP_00096370.1| hypothetical protein [Novosphingo... 51 1e-05
gi|33242441|ref|NP_877382.1| polypeptide deformylase [Chlamydoph... 51 1e-05
gi|18309742|ref|NP_561676.1| polypeptide deformylase [Clostridiu... 51 1e-05
gi|19745939|ref|NP_607075.1| putative polypeptide deformylase [S... 51 1e-05
gi|28262164|gb|EAA25668.1| polypeptide deformylase [Rickettsia s... 51 1e-05
gi|17989157|ref|NP_541790.1| POLYPEPTIDE DEFORMYLASE [Brucella m... 51 1e-05
gi|33357406|pdb|1N5N|A Chain A, Crystal Structure Of Peptide Def... 50 2e-05
gi|15892201|ref|NP_359915.1| polypeptide deformylase [EC:3.5.1.3... 50 2e-05
gi|15618975|ref|NP_225261.1| Polypeptide Deformylase [Chlamydoph... 50 2e-05
gi|29829575|ref|NP_824209.1| putative polypeptide deformylase [S... 50 2e-05
gi|24374073|ref|NP_718116.1| polypeptide deformylase [Shewanella... 50 2e-05
gi|23500203|ref|NP_699643.1| polypeptide deformylase [Brucella s... 50 3e-05
gi|22219294|pdb|1LRY|A Chain A, Crystal Structure Of P. Aerugino... 49 5e-05
gi|15595217|ref|NP_248709.1| polypeptide deformylase [Pseudomona... 49 5e-05
gi|16124527|ref|NP_419091.1| polypeptide deformylase [Caulobacte... 49 6e-05
gi|15888871|ref|NP_354552.1| AGR_C_2856p [Agrobacterium tumefaci... 49 7e-05
gi|23008036|ref|ZP_00049646.1| hypothetical protein [Magnetospir... 49 7e-05
gi|28379384|ref|NP_786276.1| formylmethionine deformylase [Lacto... 48 8e-05
>gi|22538033|ref|NP_688884.1| polypeptide deformylase [Streptococcus
agalactiae 2603V/R]
gi|25011922|ref|NP_736317.1| Unknown [Streptococcus agalactiae
NEM316]
gi|22534936|gb|AAN00757.1|AE014277_5 polypeptide deformylase
[Streptococcus agalactiae 2603V/R]
gi|24413464|emb|CAD47542.1| Unknown [Streptococcus agalactiae
NEM316]
Length = 204
Score = 394 bits (1013), Expect = e-109
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPI 60
MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPI
Sbjct: 1 MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPI 60
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV
Sbjct: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID
Sbjct: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
Query: 181 GIMFYDRINEKNPFAVKEGLLILE 204
GIMFYDRINEKNPFAVKEGLLILE
Sbjct: 181 GIMFYDRINEKNPFAVKEGLLILE 204
>gi|15903353|ref|NP_358903.1| Peptide deformylase,
N-formylmethionylaminoacyl-tRNA deformylase
[Streptococcus pneumoniae R6]
gi|25511540|pir||E98035 formylmethionine deformylase (EC 3.5.1.31)
fms [imported] - Streptococcus pneumoniae (strain R6)
gi|15458954|gb|AAL00114.1| Peptide deformylase,
N-formylmethionylaminoacyl-tRNA deformylase
[Streptococcus pneumoniae R6]
gi|15858846|gb|AAK13238.1| peptide deformylase DefB [Streptococcus
pneumoniae]
Length = 203
Score = 341 bits (875), Expect = 3e-93
Identities = 170/204 (83%), Positives = 192/204 (93%), Gaps = 1/204 (0%)
Query: 1 MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPI 60
MSAI+++ KA+HLIDMNDIIREGNPTLR VAEEVTFPLS++E ILGEKMMQFLKHSQDP+
Sbjct: 1 MSAIERITKAAHLIDMNDIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPV 60
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
MAEK+GLRGGVGLAAPQLDISKRIIAVLVPN+ + +G P+EAY L+ +MYNPK+VSHSV
Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVE-EGETPQEAYDLEAIMYNPKIVSHSV 119
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
QDAAL +GEGCLSVDR VPGYVVRHARVT++YFDK GEKHR+KLKGYNSIVVQHEIDHI+
Sbjct: 120 QDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHIN 179
Query: 181 GIMFYDRINEKNPFAVKEGLLILE 204
GIMFYDRINEK+PFAVK+GLLILE
Sbjct: 180 GIMFYDRINEKDPFAVKDGLLILE 203
>gi|15901306|ref|NP_345910.1| polypeptide deformylase [Streptococcus
pneumoniae TIGR4]
gi|17432945|sp|Q9F2F0|DEF_STRPN Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|25389140|pir||E95169 polypeptide deformylase [imported] -
Streptococcus pneumoniae (strain TIGR4)
gi|11125374|emb|CAC15392.1| polypeptide deformylase [Streptococcus
pneumoniae]
gi|14972945|gb|AAK75550.1| polypeptide deformylase [Streptococcus
pneumoniae TIGR4]
gi|15858850|gb|AAK13240.1| peptide deformylase DefB [Streptococcus
pneumoniae]
Length = 203
Score = 341 bits (874), Expect = 5e-93
Identities = 169/204 (82%), Positives = 192/204 (93%), Gaps = 1/204 (0%)
Query: 1 MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPI 60
MSAI+++ KA+HLIDMNDIIREGNPTLR +AEEVTFPLS++E ILGEKMMQFLKHSQDP+
Sbjct: 1 MSAIERITKAAHLIDMNDIIREGNPTLRAIAEEVTFPLSDQEIILGEKMMQFLKHSQDPV 60
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
MAEK+GLRGGVGLAAPQLDISKRIIAVLVPN+ + +G P+EAY L+ +MYNPK+VSHSV
Sbjct: 61 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVE-EGETPQEAYDLEAIMYNPKIVSHSV 119
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
QDAAL +GEGCLSVDR VPGYVVRHARVT++YFDK GEKHR+KLKGYNSIVVQHEIDHI+
Sbjct: 120 QDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHIN 179
Query: 181 GIMFYDRINEKNPFAVKEGLLILE 204
GIMFYDRINEK+PFAVK+GLLILE
Sbjct: 180 GIMFYDRINEKDPFAVKDGLLILE 203
>gi|33357294|pdb|1LM6|A Chain A, Crystal Structure Of Peptide
Deformylase From Streptococcus Pneumoniae
Length = 215
Score = 336 bits (861), Expect = 2e-91
Identities = 169/204 (82%), Positives = 191/204 (92%), Gaps = 1/204 (0%)
Query: 1 MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPI 60
MSAI+++ KA+HLIDMNDIIREGNPTLR VAEEVTFPLS++E ILGEKMMQFLKHSQDP+
Sbjct: 13 MSAIERITKAAHLIDMNDIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPV 72
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
MAEK+GLRGGVGLAAPQLDISKRIIAVLVPN+ + +G P+EAY L+ +MYNPK+VSHSV
Sbjct: 73 MAEKMGLRGGVGLAAPQLDISKRIIAVLVPNIVE-EGETPQEAYDLEAIMYNPKIVSHSV 131
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
QDAAL +GEG LSVDR VPGYVVRHARVT++YFDK GEKHR+KLKGYNSIVVQHEIDHI+
Sbjct: 132 QDAALGEGEGXLSVDRNVPGYVVRHARVTVDYFDKDGEKHRIKLKGYNSIVVQHEIDHIN 191
Query: 181 GIMFYDRINEKNPFAVKEGLLILE 204
GIMFYDRINEK+PFAVK+GLLILE
Sbjct: 192 GIMFYDRINEKDPFAVKDGLLILE 215
>gi|19746868|ref|NP_608004.1| putative polypeptide deformylase
[Streptococcus pyogenes MGAS8232]
gi|25452912|sp|Q8NZB7|DEF_STRP8 Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|19749109|gb|AAL98503.1| putative polypeptide deformylase
[Streptococcus pyogenes MGAS8232]
Length = 204
Score = 329 bits (843), Expect = 2e-89
Identities = 161/204 (78%), Positives = 186/204 (90%)
Query: 1 MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPI 60
MSA DKL+K SHLI M+DIIREGNPTLR VA+EV+ PL +++ +LGEKMMQFLKHSQDP+
Sbjct: 1 MSAQDKLIKPSHLITMDDIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQDPV 60
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
MAEKLGLR GVGLAAPQ+D+SKRIIAVLVPN+ D +GNPPKEAYS QEV+YNPK+VSHSV
Sbjct: 61 MAEKLGLRAGVGLAAPQIDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSV 120
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
QDAALSDGEGCLSVDR V GYVVRHARVT++Y+DK G++HR+KLKGYN+IVVQHEIDHI+
Sbjct: 121 QDAALSDGEGCLSVDRVVEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHIN 180
Query: 181 GIMFYDRINEKNPFAVKEGLLILE 204
GI+FYDRIN KNPF KE LLIL+
Sbjct: 181 GILFYDRINAKNPFETKEELLILD 204
>gi|15675756|ref|NP_269930.1| putative polypeptide deformylase
[Streptococcus pyogenes]
gi|21911220|ref|NP_665488.1| putative polypeptide deformylase
[Streptococcus pyogenes MGAS315]
gi|28896598|ref|NP_802948.1| putative polypeptide deformylase
[Streptococcus pyogenes SSI-1]
gi|23396552|sp|Q99XY7|DEF_STRPY Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|13622977|gb|AAK34651.1| putative polypeptide deformylase
[Streptococcus pyogenes M1 GAS]
gi|21905433|gb|AAM80291.1| putative polypeptide deformylase
[Streptococcus pyogenes MGAS315]
gi|28811852|dbj|BAC64781.1| putative polypeptide deformylase
[Streptococcus pyogenes SSI-1]
Length = 204
Score = 328 bits (841), Expect = 3e-89
Identities = 160/204 (78%), Positives = 186/204 (90%)
Query: 1 MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPI 60
MSA DKL+K SHLI M+DIIREGNPTLR VA+EV+ PL +++ +LGEKMMQFLKHSQDP+
Sbjct: 1 MSAQDKLIKPSHLITMDDIIREGNPTLRAVAKEVSLPLCDEDILLGEKMMQFLKHSQDPV 60
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
MAEKLGLR GVGLAAPQ+D+SKRIIAVLVPN+ D +GNPPKEAYS QEV+YNPK+VSHSV
Sbjct: 61 MAEKLGLRAGVGLAAPQIDVSKRIIAVLVPNLPDKEGNPPKEAYSWQEVLYNPKIVSHSV 120
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
QDAALSDGEGCLSVDR V GYVVRHARVT++Y+DK G++HR+KLKGYN+IVVQHEIDHI+
Sbjct: 121 QDAALSDGEGCLSVDRVVEGYVVRHARVTVDYYDKEGQQHRIKLKGYNAIVVQHEIDHIN 180
Query: 181 GIMFYDRINEKNPFAVKEGLLILE 204
G++FYDRIN KNPF KE LLIL+
Sbjct: 181 GVLFYDRINAKNPFETKEELLILD 204
>gi|24378660|ref|NP_720615.1| putative polypeptide deformylase
[Streptococcus mutans UA159]
gi|24376521|gb|AAN57921.1|AE014866_3 putative polypeptide
deformylase [Streptococcus mutans UA159]
Length = 204
Score = 322 bits (824), Expect = 3e-87
Identities = 157/204 (76%), Positives = 185/204 (89%)
Query: 1 MSAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPI 60
MSAI + KASHLIDMNDIIREG+PTLR VA++VTFPL+E + ILGEKM+QFLK+SQDP+
Sbjct: 1 MSAIKTITKASHLIDMNDIIREGHPTLRAVAQDVTFPLNEDDIILGEKMLQFLKNSQDPV 60
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
AEK+ LRGGVGLAAPQLDISKRIIAVL+PN ED GNPPKEAY+L+EVMYNP++++HSV
Sbjct: 61 TAEKMELRGGVGLAAPQLDISKRIIAVLIPNPEDKDGNPPKEAYALKEVMYNPRIIAHSV 120
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
QDAAL+DGEGCLSVDR V GYV+RH+RVTIEY+DK +K +LKLKGY SIVVQHEIDH +
Sbjct: 121 QDAALADGEGCLSVDRVVEGYVIRHSRVTIEYYDKNSDKKKLKLKGYQSIVVQHEIDHTN 180
Query: 181 GIMFYDRINEKNPFAVKEGLLILE 204
GIMF+DRINEKNPF +KEGLL++E
Sbjct: 181 GIMFFDRINEKNPFEIKEGLLLIE 204
>gi|15672542|ref|NP_266716.1| polypeptide deformylase [Lactococcus
lactis subsp. lactis]
gi|25401108|pir||H86694 polypeptide deformylase [imported] -
Lactococcus lactis subsp. lactis (strain IL1403)
gi|12723447|gb|AAK04658.1|AE006290_3 polypeptide deformylase
[Lactococcus lactis subsp. lactis]
Length = 211
Score = 268 bits (684), Expect = 5e-71
Identities = 132/202 (65%), Positives = 170/202 (83%), Gaps = 4/202 (1%)
Query: 7 LVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLG 66
L+KASH+I M+DIIREG PTLR+VA +VT PLS+++ ILGEKM+QFL +SQDP+MAEK+G
Sbjct: 10 LIKASHMISMDDIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMG 69
Query: 67 LRGGVGLAAPQLDISKRIIAVLVPNV----EDAQGNPPKEAYSLQEVMYNPKVVSHSVQD 122
LRGGVGLAA QL + K++IAVL+PN ED PPKEAY ++E+MYN KVVSHSVQD
Sbjct: 70 LRGGVGLAANQLGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVVSHSVQD 129
Query: 123 AALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGI 182
AA+ GEGCLSVDREVPGYVVRHARVT+EY++K GEK +++LK + +I VQHEIDH +G+
Sbjct: 130 AAVEGGEGCLSVDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGV 189
Query: 183 MFYDRINEKNPFAVKEGLLILE 204
MFYD IN +P+ +K+G++I++
Sbjct: 190 MFYDHINMNDPWEIKDGMIIVK 211
>gi|806487|gb|AAC41454.1| ORF211; putative
Length = 211
Score = 267 bits (683), Expect = 6e-71
Identities = 133/202 (65%), Positives = 172/202 (84%), Gaps = 4/202 (1%)
Query: 7 LVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLG 66
L+KASH+I M+DIIREG PTLR+VA +VT PLS+++ ILGEKM+QFL +SQDP+MAEK+G
Sbjct: 10 LIKASHMISMDDIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMG 69
Query: 67 LRGGVGLAAPQLDISKRIIAVLVPNVE--DAQGN--PPKEAYSLQEVMYNPKVVSHSVQD 122
LRGGVGLAA QL + K++IAVL+PN D +GN PPKEAY ++E+MYN KVVSHSVQD
Sbjct: 70 LRGGVGLAANQLGLLKKVIAVLIPNEPEVDEEGNEIPPKEAYKMREIMYNAKVVSHSVQD 129
Query: 123 AALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGI 182
AA+ GEGCLSVDREVPGYVVRHARVT+EY++K GEK +++LK + +I VQHEIDH +G+
Sbjct: 130 AAVEGGEGCLSVDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGV 189
Query: 183 MFYDRINEKNPFAVKEGLLILE 204
MFYD IN +P+ +K+G++I++
Sbjct: 190 MFYDHINMNDPWEIKDGMIIVK 211
>gi|22990452|ref|ZP_00035306.1| hypothetical protein [Enterococcus
faecium]
gi|29650280|gb|AAO88058.1| peptide deformylase [Enterococcus
faecium]
Length = 187
Score = 264 bits (674), Expect = 7e-70
Identities = 131/192 (68%), Positives = 165/192 (85%), Gaps = 5/192 (2%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
+I M+DIIREGNPTLR+VA+EV+ PLSE++ LG++M++FLK+SQDPI AE+L LRGGVG
Sbjct: 1 MITMDDIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
LAAPQLDISKRIIAV VP+ + P + SL VMYNPK++SHSVQDA L +GEGCL
Sbjct: 61 LAAPQLDISKRIIAVHVPSPD-----PEADGPSLSTVMYNPKILSHSVQDACLGEGEGCL 115
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SVDREVPGYVVRHA++T+ Y+D GEKH+++LK Y SIVVQHEIDHI+G+MFYD IN++N
Sbjct: 116 SVDREVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHINDQN 175
Query: 193 PFAVKEGLLILE 204
PFA+KEG+L++E
Sbjct: 176 PFALKEGVLVIE 187
>gi|29377524|ref|NP_816678.1| polypeptide deformylase [Enterococcus
faecalis V583]
gi|29344991|gb|AAO82748.1| polypeptide deformylase [Enterococcus
faecalis V583]
Length = 187
Score = 259 bits (663), Expect = 2e-68
Identities = 129/192 (67%), Positives = 158/192 (82%), Gaps = 5/192 (2%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
+I M DIIREGNPTLR VAEEV P++E++ LGE M+ FLK+SQDP+ AE+L LRGGVG
Sbjct: 1 MITMKDIIREGNPTLRAVAEEVPVPITEEDRQLGEDMLTFLKNSQDPVKAEELQLRGGVG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
LAAPQLDISKRIIAV VP+ +P E SL VMYNPK++SHSVQD L +GEGCL
Sbjct: 61 LAAPQLDISKRIIAVHVPS-----NDPENETPSLSTVMYNPKILSHSVQDVCLGEGEGCL 115
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SVDR+VPGYVVRH ++T+ YFD GEKH+++LK Y +IVVQHEIDHI+GIMFYD IN++N
Sbjct: 116 SVDRDVPGYVVRHNKITVSYFDMAGEKHKVRLKNYEAIVVQHEIDHINGIMFYDHINKEN 175
Query: 193 PFAVKEGLLILE 204
PFA+KEG+L++E
Sbjct: 176 PFALKEGVLVIE 187
>gi|13637693|sp|Q48661|DEF_LACLA Peptide deformylase (PDF)
(Polypeptide deformylase)
Length = 196
Score = 258 bits (659), Expect = 4e-68
Identities = 127/196 (64%), Positives = 164/196 (82%), Gaps = 4/196 (2%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
+I M+DIIREG PTLR+VA +VT PLS+++ ILGEKM+QFL +SQDP+MAEK+GLRGGVG
Sbjct: 1 MISMDDIIREGYPTLREVANDVTLPLSDEDIILGEKMLQFLHNSQDPVMAEKMGLRGGVG 60
Query: 73 LAAPQLDISKRIIAVLVPNV----EDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDG 128
LAA QL + K++IAVL+PN ED PPKEAY ++E+MYN KVVSHSVQDAA+ G
Sbjct: 61 LAANQLGLLKKVIAVLIPNEPEVDEDGNEIPPKEAYKMREIMYNAKVVSHSVQDAAVEGG 120
Query: 129 EGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
EGCLSVDREVPGYVVRHARVT+EY++K GEK +++LK + +I VQHEIDH +G+MFYD I
Sbjct: 121 EGCLSVDREVPGYVVRHARVTVEYYNKEGEKKKIRLKDFPAICVQHEIDHTNGVMFYDHI 180
Query: 189 NEKNPFAVKEGLLILE 204
N +P+ +K+G++I++
Sbjct: 181 NMNDPWEIKDGMIIVK 196
>gi|16803091|ref|NP_464576.1| similar to formylmethionine
deformylase and to B. subtilis YkrB protein [Listeria
monocytogenes EGD-e]
gi|23396542|sp|Q8Y866|DEF_LISMO Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|25303722|pir||AC1206 formylmethionine deformylase and to B.
subtilis YkrB protein homolog lmo1051 [imported] -
Listeria monocytogenes (strain EGD-e)
gi|16410453|emb|CAC99129.1| lmo1051 [Listeria monocytogenes]
Length = 183
Score = 213 bits (543), Expect = 1e-54
Identities = 108/181 (59%), Positives = 140/181 (76%), Gaps = 9/181 (4%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
++ M+DI+REG+P LR+VA EVTFPLS++E+ LG M++FL +SQD +AEK GLRGGVG
Sbjct: 1 MLTMDDIVREGHPALREVATEVTFPLSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
+AAPQL ++KR +A+ V + +D YS V+YNPK+ SHSVQ A LS GEGCL
Sbjct: 61 IAAPQLAVTKRFLAIHVHDEKD-------RLYSY--VLYNPKIRSHSVQQACLSGGEGCL 111
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SVDREVPGYVVR RVTI+ FD+ G +L+ KGY +IV+QHEIDH++GIMFYD IN++N
Sbjct: 112 SVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKEN 171
Query: 193 P 193
P
Sbjct: 172 P 172
>gi|16800112|ref|NP_470380.1| similar to formylmethionine
deformylase and to B. subtilis YkrB protein [Listeria
innocua]
gi|23396547|sp|Q92CX8|DEF_LISIN Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|25303721|pir||AB1563 formylmethionine deformylase and to B.
subtilis YkrB protein homolog lin1043 [imported] -
Listeria innocua (strain Clip11262)
gi|16413502|emb|CAC96274.1| lin1043 [Listeria innocua]
Length = 183
Score = 213 bits (541), Expect = 2e-54
Identities = 108/181 (59%), Positives = 140/181 (76%), Gaps = 9/181 (4%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
++ M+DI+REG+P LR+VA EVTFPLS++E+ LG M++FL +SQD +AEK GLRGGVG
Sbjct: 1 MLTMDDIVREGHPALREVATEVTFPLSDEEKKLGHDMLEFLINSQDEELAEKYGLRGGVG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
+AAPQL ++KR +A+ V + +D YS V+YNPK+ SHSVQ A LS GEGCL
Sbjct: 61 IAAPQLAVTKRFLAIHVHDEKD-------RLYSY--VLYNPKIRSHSVQQACLSGGEGCL 111
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SVDREVPGYVVR RVTI+ FD+ G +L+ KGY +IVVQHEIDH++G+MFYD IN++N
Sbjct: 112 SVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVVQHEIDHLNGVMFYDHINKEN 171
Query: 193 P 193
P
Sbjct: 172 P 172
>gi|28378768|ref|NP_785660.1| formylmethionine deformylase
[Lactobacillus plantarum WCFS1]
gi|28271605|emb|CAD64511.1| formylmethionine deformylase
[Lactobacillus plantarum WCFS1]
Length = 186
Score = 205 bits (521), Expect = 4e-52
Identities = 101/191 (52%), Positives = 144/191 (74%), Gaps = 6/191 (3%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
+I M DIIREGN TLR A++V FPLSE ++ L MM++L++SQDP +A+K GLR GVG
Sbjct: 1 MIKMRDIIREGNHTLRAEAKQVKFPLSEADQKLANDMMEYLENSQDPELAKKYGLRAGVG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
LAAPQ+D+S+++ AVLVP+ E+ P ++V+ NP ++SHSVQ AL++GEGCL
Sbjct: 61 LAAPQVDVSEQMAAVLVPS-ENEDDEP-----VFKDVIINPVIISHSVQPGALTEGEGCL 114
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SVDR++ GYV+RH R+T+ Y++ GE+ +++LK Y +IV QHEIDH+ GI+FYD IN N
Sbjct: 115 SVDRDIAGYVIRHDRITLRYYNMAGEEKKIRLKNYPAIVCQHEIDHLHGILFYDHINGDN 174
Query: 193 PFAVKEGLLIL 203
PFA + L+++
Sbjct: 175 PFAADDDLVLI 185
>gi|6225247|sp|O31410|DEF2_BACST Peptide deformylase 2 (PDF 2)
(Polypeptide deformylase 2)
gi|22219287|pdb|1LQY|A Chain A, Crystal Structure Of Bacillus
Stearothermophilus Peptide Deformylase Complexed With
Antibiotic Actinonin
gi|2266414|emb|CAA71581.1| N-formylmethionylaminoacyl-tRNA
deformylase [Geobacillus stearothermophilus]
Length = 184
Score = 196 bits (498), Expect = 2e-49
Identities = 102/189 (53%), Positives = 138/189 (72%), Gaps = 9/189 (4%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
+I M DII+EG+PTLRKVAE V P SE+++ + + ++ ++K SQDP +A K GLR G+G
Sbjct: 1 MITMKDIIKEGHPTLRKVAEPVPLPPSEEDKRILQSLLDYVKMSQDPELAAKYGLRPGIG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
LAAPQ+++SKR+IAV +V D G YS ++NPK+VSHSVQ L+ GEGCL
Sbjct: 61 LAAPQINVSKRMIAV---HVTDENGT----LYSY--ALFNPKIVSHSVQQCYLTTGEGCL 111
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SVDR+VPGYV+R+AR+T+ GE+ L+LKG +IV QHEIDH++GIMFYDRIN +
Sbjct: 112 SVDRDVPGYVLRYARITVTGTTLDGEEVTLRLKGLPAIVFQHEIDHLNGIMFYDRINPAD 171
Query: 193 PFAVKEGLL 201
PF V +G +
Sbjct: 172 PFQVPDGAI 180
>gi|21402026|ref|NP_658011.1| Pep_deformylase, Polypeptide
deformylase [Bacillus anthracis A2012]
gi|30264046|ref|NP_846423.1| polypeptide deformylase [Bacillus
anthracis str. Ames]
gi|30258691|gb|AAP27909.1| polypeptide deformylase [Bacillus
anthracis str. Ames]
Length = 184
Score = 191 bits (484), Expect = 9e-48
Identities = 101/192 (52%), Positives = 137/192 (70%), Gaps = 9/192 (4%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
++ M D+IREG+P LR VAEEV P SE++ ++M++F+ +SQDP MAEK LR G+G
Sbjct: 1 MLTMKDVIREGDPILRNVAEEVVIPASEEDTNTLKEMIEFVINSQDPEMAEKYSLRPGIG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
LAAPQ+ ISK++IAV +V D G YS ++NPK++SHSV+ L GEGCL
Sbjct: 61 LAAPQIGISKKMIAV---HVTDTDGT----LYS--HALFNPKIISHSVERTYLQSGEGCL 111
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SVDREVPGYV R+ R+T++ GE+ +L+LKG +IV QHEIDH++G+MFYD IN++N
Sbjct: 112 SVDREVPGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKEN 171
Query: 193 PFAVKEGLLILE 204
PFA +G LE
Sbjct: 172 PFAAPDGSKPLE 183
>gi|30022062|ref|NP_833693.1| Polypeptide deformylase [Bacillus
cereus ATCC 14579]
gi|29897619|gb|AAP10894.1| Polypeptide deformylase [Bacillus cereus
ATCC 14579]
Length = 184
Score = 190 bits (483), Expect = 1e-47
Identities = 98/186 (52%), Positives = 136/186 (72%), Gaps = 9/186 (4%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
++ M D+IREG+P LR VAEEV+ P SE++ ++M++F+ +SQDP MAEK LR G+G
Sbjct: 1 MLTMKDVIREGDPILRNVAEEVSLPASEEDTTTLKEMIEFVINSQDPEMAEKYSLRPGIG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
LAAPQ+ +SK++IAV +V DA G YS ++NPK++SHSV+ L GEGCL
Sbjct: 61 LAAPQIGVSKKMIAV---HVTDADGT----LYS--HALFNPKIISHSVERTYLQGGEGCL 111
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SVDREVPGYV R+ R+T++ GE+ +L+LKG +IV QHEIDH++G+MFYD IN++N
Sbjct: 112 SVDREVPGYVPRYTRITVKATSINGEEVKLRLKGLPAIVFQHEIDHLNGVMFYDHINKEN 171
Query: 193 PFAVKE 198
PFA +
Sbjct: 172 PFAAPD 177
>gi|23098865|ref|NP_692331.1| formylmethionine deformylase
[Oceanobacillus iheyensis HTE831]
gi|32363150|sp|Q8ER96|DEF_OCEIH Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|22777092|dbj|BAC13366.1| formylmethionine deformylase
[Oceanobacillus iheyensis HTE831]
Length = 183
Score = 184 bits (467), Expect = 7e-46
Identities = 103/186 (55%), Positives = 134/186 (71%), Gaps = 9/186 (4%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
+I M DI+REG+P+L + A V PLS+ ++ L E MMQFLK+SQD +AEK LR GVG
Sbjct: 1 MITMKDIVREGHPSLTRSAAVVEVPLSKDDKQLLEDMMQFLKNSQDEEIAEKYELRAGVG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
+AAPQL I K+IIA+ + ED G + YS+ V NPK++SHSV+ + LS GEGCL
Sbjct: 61 IAAPQLGIEKQIIAI---HFEDIDG----KLYSMGLV--NPKIISHSVEQSYLSSGEGCL 111
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SVDR V GYV RHAR+TI+ D + +L+LKGY +IV QHEIDHI+GIMF+DRIN ++
Sbjct: 112 SVDRPVEGYVPRHARITIKATDINDQPVKLRLKGYPAIVFQHEIDHINGIMFFDRINTED 171
Query: 193 PFAVKE 198
PF + E
Sbjct: 172 PFNIPE 177
>gi|23002612|ref|ZP_00046287.1| hypothetical protein [Lactobacillus
gasseri]
Length = 181
Score = 177 bits (450), Expect = 7e-44
Identities = 91/188 (48%), Positives = 134/188 (70%), Gaps = 8/188 (4%)
Query: 16 MNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAA 75
M+DI R+GNP LR+VA+ +TFPL+++ + L ++MMQ+L +SQDP +AEK LR GVGLAA
Sbjct: 1 MHDITRDGNPVLRQVAKPLTFPLADEYKELADEMMQYLINSQDPKIAEKHQLRAGVGLAA 60
Query: 76 PQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVD 135
PQ+ S ++ A+LVPN K +EV NPK++S SV+ A L++GEGCLSVD
Sbjct: 61 PQVGKSIQMAALLVPN--------DKGEIIFKEVFVNPKIISESVRKACLAEGEGCLSVD 112
Query: 136 REVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFA 195
+++ GYV R ++ I Y+ GE+ ++LK Y +IV HEIDH++G +FYDRIN++NPF
Sbjct: 113 KDIEGYVPRPDKLKIHYYTVDGEEKTIRLKDYPAIVASHEIDHLNGHLFYDRINKQNPFD 172
Query: 196 VKEGLLIL 203
+ E +++
Sbjct: 173 LAEDTIVI 180
>gi|15615221|ref|NP_243524.1| formylmethionine deformylase [Bacillus
halodurans]
gi|17432952|sp|Q9K9I9|DEF_BACHD Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|25303711|pir||B83982 formylmethionine deformylase BH2658
[imported] - Bacillus halodurans (strain C-125)
gi|10175279|dbj|BAB06377.1| formylmethionine deformylase [Bacillus
halodurans]
Length = 182
Score = 174 bits (441), Expect = 9e-43
Identities = 92/176 (52%), Positives = 130/176 (73%), Gaps = 9/176 (5%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
++ M DI+REGNP LR+VA+ V PLS++++ ++M++FL +SQ+P +AEK LR GVG
Sbjct: 1 MLTMKDIVREGNPVLREVAKPVPVPLSDEDKQTAKRMLEFLINSQNPEIAEKYSLRPGVG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
LAAPQ+ +SK++IAV + + + YSL V++NPK++S SV+ L GEGCL
Sbjct: 61 LAAPQIGLSKQMIAVHTTDENEKE-------YSL--VLFNPKIISESVEMTHLEGGEGCL 111
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
SVDREV G V RHAR+T++ ++ E+ RLKLKG+ +IV QHEIDH++GIMFYDRI
Sbjct: 112 SVDREVQGIVPRHARITVKAINENNEEVRLKLKGFPAIVFQHEIDHLNGIMFYDRI 167
>gi|15924081|ref|NP_371615.1| formylmethionine deformylase homolog
[Staphylococcus aureus subsp. aureus Mu50]
gi|15926677|ref|NP_374210.1| formylmethionine deformylase homolog
[Staphylococcus aureus subsp. aureus N315]
gi|23396554|sp|Q9F4L4|DEF_STAAM Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|25303723|pir||A89879 hypothetical protein pdf1 [imported] -
Staphylococcus aureus (strain N315)
gi|22219285|pdb|1LQW|A Chain A, Crystal Structure Of S.Aureus
Peptide Deformylase
gi|22219286|pdb|1LQW|B Chain B, Crystal Structure Of S.Aureus
Peptide Deformylase
gi|9965494|gb|AAG02249.1| peptide deformylase Pdf1 [Staphylococcus
aureus]
gi|13700892|dbj|BAB42188.1| pdf1 [Staphylococcus aureus subsp.
aureus N315]
gi|14246861|dbj|BAB57253.1| formylmethionine deformylase homolog
[Staphylococcus aureus subsp. aureus Mu50]
Length = 183
Score = 174 bits (440), Expect = 1e-42
Identities = 94/181 (51%), Positives = 129/181 (70%), Gaps = 8/181 (4%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
++ M DIIR+G+PTLR+ A E+ PL+++E+ M +FL +SQD +A++ GLR GVG
Sbjct: 1 MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
LAAPQ++ISKR+IAVL+P +D G S ++ NPK+VSHSVQ+A L GEGCL
Sbjct: 61 LAAPQINISKRMIAVLIP--DDGSGK------SYDYMLVNPKIVSHSVQEAYLPTGEGCL 112
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SVD V G V RH R+TI+ D G +L+LKGY +IV QHEIDH++G+MFYD I++ +
Sbjct: 113 SVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKNH 172
Query: 193 P 193
P
Sbjct: 173 P 173
>gi|16078520|ref|NP_389339.1| similar to formylmethionine
deformylase [Bacillus subtilis]
gi|6225248|sp|Q45495|DEF2_BACSU Peptide deformylase 2 (PDF 2)
(Polypeptide deformylase 2)
gi|7429443|pir||D69862 formylmethionine deformylase homolog ykrB -
Bacillus subtilis
gi|2633827|emb|CAB13329.1| ykrB [Bacillus subtilis subsp. subtilis
str. 168]
gi|3282140|gb|AAC24930.1| unknown [Bacillus subtilis]
Length = 184
Score = 173 bits (439), Expect = 1e-42
Identities = 92/192 (47%), Positives = 135/192 (69%), Gaps = 9/192 (4%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
+I M +I+R+G+P LR+ AE V P ++ E+ M++F+K+SQ+P +AEK LR GVG
Sbjct: 1 MITMENIVRDGHPALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
LAAPQ++I KR+IAV + EDA G + YS ++NPK+VSHSV+ + L+ GEGCL
Sbjct: 61 LAAPQINIKKRMIAV---HAEDASG----KLYSY--ALFNPKIVSHSVEKSYLTSGEGCL 111
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SVD +PGYV R+AR+ ++ GE ++LKG+ +IV QHEIDH++G+MFYD I+++N
Sbjct: 112 SVDEAIPGYVPRYARIRVKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHIDKEN 171
Query: 193 PFAVKEGLLILE 204
PF E + +E
Sbjct: 172 PFKEPENAIAIE 183
>gi|21282703|ref|NP_645791.1| ORFID:MW0974~formylmethionine
deformylase homolog [Staphylococcus aureus subsp. aureus
MW2]
gi|21204141|dbj|BAB94839.1| pdf1 [Staphylococcus aureus subsp.
aureus MW2]
Length = 183
Score = 173 bits (439), Expect = 1e-42
Identities = 94/181 (51%), Positives = 129/181 (70%), Gaps = 8/181 (4%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
++ M DIIR+G+PTLR+ A E+ PL+++E+ M +FL +SQD +A++ GLR GVG
Sbjct: 1 MLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
LAAPQ++ISKR+IAVL+P +D G S ++ NPK+VSHSVQ+A L GEGCL
Sbjct: 61 LAAPQINISKRMIAVLIP--DDGSGK------SYDYMLVNPKIVSHSVQEAYLPTGEGCL 112
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SVD V G V RH R+TI+ D G +L+LKGY +IV QHEIDH++G+MFYD I++ +
Sbjct: 113 SVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKDH 172
Query: 193 P 193
P
Sbjct: 173 P 173
>gi|33357292|pdb|1LM4|A Chain A, Structure Of Peptide Deformylase
From Staphylococcus Aureus At 1.45 A
gi|33357293|pdb|1LM4|B Chain B, Structure Of Peptide Deformylase
From Staphylococcus Aureus At 1.45 A
Length = 194
Score = 172 bits (435), Expect = 4e-42
Identities = 94/182 (51%), Positives = 129/182 (70%), Gaps = 8/182 (4%)
Query: 12 HLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGV 71
H++ M DIIR+G+PTLR+ A E+ PL+++E+ M +FL +SQD +A++ GLR GV
Sbjct: 11 HMLTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGV 70
Query: 72 GLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGC 131
GLAAPQ++ISKR+IAVL+P +D G S ++ NPK+VSHSVQ+A L GEG
Sbjct: 71 GLAAPQINISKRMIAVLIP--DDGSGK------SYDYMLVNPKIVSHSVQEAYLPTGEGX 122
Query: 132 LSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEK 191
LSVD V G V RH R+TI+ D G +L+LKGY +IV QHEIDH++G+MFYD I++
Sbjct: 123 LSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVMFYDHIDKN 182
Query: 192 NP 193
+P
Sbjct: 183 HP 184
>gi|27467707|ref|NP_764344.1| formylmethionine deformylase
[Staphylococcus epidermidis ATCC 12228]
gi|32129485|sp|Q8CPN4|DEF_STAEP Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|27315251|gb|AAO04386.1|AE016746_176 formylmethionine deformylase
[Staphylococcus epidermidis ATCC 12228]
Length = 183
Score = 171 bits (433), Expect = 7e-42
Identities = 94/186 (50%), Positives = 126/186 (67%), Gaps = 8/186 (4%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
+I M DIIR+G+PTLR+ A+E++FPLS ++ M +FL +SQD A++ GLR GVG
Sbjct: 1 MITMKDIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
LAAPQ++ KR+IAV +P +D G S ++ NPK++S+SVQ+A L GEGCL
Sbjct: 61 LAAPQINEPKRMIAVYLP--DDGNGK------SYDYMLVNPKIMSYSVQEAYLPTGEGCL 112
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SVD +PG V RH RVTI+ D G +L+LKGY +IV QHEIDH++GIMFYD I+
Sbjct: 113 SVDENIPGLVHRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYIDANE 172
Query: 193 PFAVKE 198
P E
Sbjct: 173 PLKPHE 178
>gi|23038455|ref|ZP_00070604.1| hypothetical protein [Oenococcus
oeni MCW]
Length = 188
Score = 169 bits (429), Expect = 2e-41
Identities = 87/192 (45%), Positives = 131/192 (67%), Gaps = 4/192 (2%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
+I M DI R+GNP LR A+ VTFPL + + LG +M++FL+ SQD E LR GVG
Sbjct: 1 MILMEDITRDGNPVLRAKAKPVTFPLDLEIKKLGHRMLEFLEVSQDKEKNETYHLRPGVG 60
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
LA PQ++ S ++ A+L+P++ + + P + ++YNPK+ S++ AAL GEGCL
Sbjct: 61 LAGPQVNKSLQMTALLIPSLNPEEDSKP----YFRGIVYNPKITRESMKRAALETGEGCL 116
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
S D + PG V+R ++T++Y D+ GE H ++LK Y +IV QHEIDH+ GIM+YD INE +
Sbjct: 117 SKDEDTPGIVLRADKITVDYDDENGEHHSIRLKDYPAIVFQHEIDHLKGIMYYDHINELD 176
Query: 193 PFAVKEGLLILE 204
P+AV E +++++
Sbjct: 177 PWAVSEDVVLIK 188
>gi|21730762|pdb|1LMH|A Chain A, Crystal Structure Of S. Aureus
Peptide Deformylase
Length = 184
Score = 162 bits (411), Expect = 2e-39
Identities = 90/176 (51%), Positives = 122/176 (69%), Gaps = 8/176 (4%)
Query: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77
DIIR+G+PTLR+ A E+ PL+++E+ +FL +SQD +A++ GLR GVGLAAPQ
Sbjct: 6 DIIRDGHPTLRQKAAELELPLTKEEKETLIAXREFLVNSQDEEIAKRYGLRSGVGLAAPQ 65
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137
++ISKR IAVL+P +D G S + NPK+VSHSVQ+A L GEGCLSVD
Sbjct: 66 INISKRXIAVLIP--DDGSGK------SYDYXLVNPKIVSHSVQEAYLPTGEGCLSVDDN 117
Query: 138 VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNP 193
V G V RH ++TI+ D G +L+LKGY +IV QHEIDH++G+ FYD I++ +P
Sbjct: 118 VAGLVHRHNKITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNGVXFYDHIDKDHP 173
>gi|23023575|ref|ZP_00062809.1| hypothetical protein [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 150
Score = 108 bits (271), Expect = 4e-23
Identities = 60/128 (46%), Positives = 82/128 (63%), Gaps = 7/128 (5%)
Query: 16 MNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAA 75
M+ I R+G+P LRK A V FPLSE+ L + MM++L SQD EK GLR GVGLAA
Sbjct: 7 MDKITRDGDPVLRKTAASVPFPLSEEHAQLAKDMMEYLVVSQDEKQNEKYGLRPGVGLAA 66
Query: 76 PQLDISKRIIAVLVPNV--EDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLS 133
PQ+ S R+ ++L+P + ED P + ++NP ++S SV+ AL+ GEGCLS
Sbjct: 67 PQVGYSLRMSSILIPALDPEDTIDEP-----YFKGTIFNPVIISESVKRGALNVGEGCLS 121
Query: 134 VDREVPGY 141
VD +VPG+
Sbjct: 122 VDEDVPGF 129
>gi|15829160|ref|NP_326520.1| POLYPEPTIDE DEFORMYLASE 2 (PDF 2)
(FORMYLMETHIONINE DEFORMYLASE 2) [Mycoplasma pulmonis]
gi|23396551|sp|Q98PN3|DEF_MYCPU Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|25303720|pir||A90598 hypothetical protein MYPU_6890 [imported] -
Mycoplasma pulmonis (strain UAB CTIP)
gi|14090104|emb|CAC13862.1| POLYPEPTIDE DEFORMYLASE 2 (PDF 2)
(FORMYLMETHIONINE DEFORMYLASE 2) [Mycoplasma pulmonis]
Length = 198
Score = 107 bits (266), Expect = 2e-22
Identities = 66/184 (35%), Positives = 104/184 (55%), Gaps = 14/184 (7%)
Query: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77
+I++ LR+ ++ V PL++ L EKM+ + SQ P R GVG+AA Q
Sbjct: 8 EIVQLPKKVLRQKSKNVNIPLNKTNIELAEKMIYHIDDSQGP----NTKFRPGVGVAAVQ 63
Query: 78 LDISKRIIAVLVPN------VEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGC 131
I K + V VPN + +Q P++ Y ++V++NP+V+ S + A+S GEGC
Sbjct: 64 YGILKNVFYVCVPNDSRLTQRDSSQEVKPEDKYLFRDVIFNPEVIWKSDEMVAISQGEGC 123
Query: 132 LSVDREVP---GYVVRHARVTIEYFDKTGEKHRL-KLKGYNSIVVQHEIDHIDGIMFYDR 187
LSVD P G V RH + ++ + +K + +KGY +IV QHE+DH++G++F DR
Sbjct: 124 LSVDESWPNQEGLVRRHMEIKVKGYSYFQKKEMIWHVKGYVAIVFQHELDHLNGMLFIDR 183
Query: 188 INEK 191
I+ K
Sbjct: 184 IDPK 187
>gi|7109689|gb|AAF36760.1| polypeptide deformylase [Mycoplasma
gallisepticum]
gi|28212477|gb|AAO37616.1| polypeptide deformylase [Mycoplasma
gallisepticum]
Length = 204
Score = 103 bits (258), Expect = 1e-21
Identities = 69/199 (34%), Positives = 112/199 (55%), Gaps = 12/199 (6%)
Query: 8 VKASHLIDMND-IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLG 66
+ S L ND ++ + NP +R+V EV FPLS++ + +KM+ ++ S D AEK
Sbjct: 8 IMKSKLKPTNDWLVTDDNPKMREVCSEVKFPLSQEVLDIIDKMLAYVDESFDD-NAEKYD 66
Query: 67 LRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALS 126
+R G+G+AA QL +++R V ++ Q KE L + NP+ + S+ A L+
Sbjct: 67 IRPGIGIAANQLGLNQRFFYVHF--IDFCQ----KEHRYL---LINPEWIDKSLNKAYLA 117
Query: 127 DGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKH-RLKLKGYNSIVVQHEIDHIDGIMFY 185
GEGCLSV ++ GYV+R V ++ FD +K + G ++ +QHE+DH++G +Y
Sbjct: 118 VGEGCLSVPKDKDGYVIRSETVKLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYY 177
Query: 186 DRINEKNPFAVKEGLLILE 204
D IN PF K+ + +E
Sbjct: 178 DSINMMKPFHKKDEWVCIE 196
>gi|31544845|ref|NP_853423.1| Def [Mycoplasma gallisepticum R]
gi|31541691|gb|AAP56991.1| Def [Mycoplasma gallisepticum R]
Length = 213
Score = 102 bits (254), Expect = 4e-21
Identities = 63/193 (32%), Positives = 107/193 (54%), Gaps = 12/193 (6%)
Query: 8 VKASHLIDMND-IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLG 66
+ S L ND ++ + NP +R+V EV FPLS++ + +KM+ ++ S D AEK
Sbjct: 17 IMKSKLKPTNDWLVTDDNPKMREVCTEVKFPLSQEVLDIIDKMLAYVDESFDD-NAEKYD 75
Query: 67 LRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALS 126
+R G+G+AA QL +++R V + + + ++ NP+ + S+ A L+
Sbjct: 76 IRPGIGIAANQLGLNQRFFYVHFTDFCQKEH---------RYLLINPEWIDKSLNKAYLA 126
Query: 127 DGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKH-RLKLKGYNSIVVQHEIDHIDGIMFY 185
GEGCLSV ++ GYV+R V ++ FD +K + G ++ +QHE+DH++G +Y
Sbjct: 127 VGEGCLSVPKDKDGYVIRSETVKLKGFDYLTQKDVEISAHGLLAMCLQHEMDHLEGKFYY 186
Query: 186 DRINEKNPFAVKE 198
D IN P+ K+
Sbjct: 187 DSINMMKPYFKKD 199
>gi|12044958|ref|NP_072768.1| polypeptide deformylase (def)
[Mycoplasma genitalium]
gi|1361510|pir||G64211 formylmethionine deformylase homolog -
Mycoplasma genitalium
gi|3844695|gb|AAC71324.1| polypeptide deformylase (def) [Mycoplasma
genitalium]
Length = 226
Score = 95.1 bits (235), Expect = 6e-19
Identities = 59/180 (32%), Positives = 96/180 (52%), Gaps = 12/180 (6%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
++ + N + K E V FP+ E+ E +KM+ ++ S D A++ + G+G+AA Q+
Sbjct: 43 LVFDDNALINKPTEAVNFPIDEQIETCIKKMIAYVDASYDG-KAQEYDIIPGIGIAANQI 101
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
K++ + + ++ KE L + NPK++ S A L GEGCLSV ++
Sbjct: 102 GYWKQLFYIHLNDLN-------KEKKCL---LINPKIIDQSENKAFLESGEGCLSVKKQH 151
Query: 139 PGYVVRHARVTIEYFDKTGEKH-RLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVK 197
GYV+R +TI+ +D +K +K G + +QHE DH+ G FY RIN NP+ K
Sbjct: 152 KGYVIRSEWITIKGYDWFEKKEITIKATGLFGMCLQHEFDHLQGRFFYQRINPLNPWFKK 211
>gi|2507258|sp|P47352|DEF_MYCGE Peptide deformylase (PDF)
(Polypeptide deformylase)
Length = 216
Score = 95.1 bits (235), Expect = 6e-19
Identities = 59/180 (32%), Positives = 96/180 (52%), Gaps = 12/180 (6%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
++ + N + K E V FP+ E+ E +KM+ ++ S D A++ + G+G+AA Q+
Sbjct: 33 LVFDDNALINKPTEAVNFPIDEQIETCIKKMIAYVDASYDG-KAQEYDIIPGIGIAANQI 91
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
K++ + + ++ KE L + NPK++ S A L GEGCLSV ++
Sbjct: 92 GYWKQLFYIHLNDLN-------KEKKCL---LINPKIIDQSENKAFLESGEGCLSVKKQH 141
Query: 139 PGYVVRHARVTIEYFDKTGEKH-RLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVK 197
GYV+R +TI+ +D +K +K G + +QHE DH+ G FY RIN NP+ K
Sbjct: 142 KGYVIRSEWITIKGYDWFEKKEITIKATGLFGMCLQHEFDHLQGRFFYQRINPLNPWFKK 201
>gi|26554017|ref|NP_757951.1| polypeptide deformylase [Mycoplasma
penetrans]
gi|32363151|sp|Q8EVJ8|DEF_MYCPE Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|26454025|dbj|BAC44355.1| polypeptide deformylase [Mycoplasma
penetrans]
Length = 186
Score = 94.7 bits (234), Expect = 9e-19
Identities = 57/181 (31%), Positives = 103/181 (56%), Gaps = 12/181 (6%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I+ + NP + K E+V FPL++++E + +M+ ++ S + A+K +R G+G+AA QL
Sbjct: 12 IVYDNNPVMHKPIEDVVFPLTKEDEHVISQMLSYVDASYEG-EADKYDIRAGIGIAAIQL 70
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
K+II + +++D G + +M NPK++ S L +GEGCLSV ++
Sbjct: 71 GCPKKIIYI---HLDDKNGEH-------KYLMANPKIIKESTSKMYLKNGEGCLSVKKDH 120
Query: 139 PGYVVRHARVTIEYFDK-TGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVK 197
G +R + V ++ D T ++ +K + QHE+DH + +Y+RINE +P+ V+
Sbjct: 121 KGLSIRKSIVWVKGIDLFTNKEIEVKATDLLAACFQHEVDHNNNKFYYNRINESDPYYVE 180
Query: 198 E 198
+
Sbjct: 181 K 181
>gi|13358028|ref|NP_078302.1| polypeptide deformylase [Ureaplasma
urealyticum]
gi|23396555|sp|Q9PQ25|DEF_UREPA Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|11357006|pir||F82886 polypeptide deformylase UU465 [imported] -
Ureaplasma urealyticum
gi|6899459|gb|AAF30877.1|AE002143_2 polypeptide deformylase
[Ureaplasma urealyticum]
Length = 198
Score = 89.4 bits (220), Expect = 3e-17
Identities = 56/181 (30%), Positives = 101/181 (54%), Gaps = 19/181 (10%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILG-EKMMQFLK---HSQDPIMAEKLGLRGGVGLA 74
I ++ +P LR+V +++ K++I +KM++++ H+Q A+K +R G+ +A
Sbjct: 21 IFKDPHPILREVTQDIEGNELSKDDIYYLKKMVRYIDVCYHNQ----AKKYKIRSGIAIA 76
Query: 75 APQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSV 134
A Q+ +KR + + EA ++ NP ++ S + A L+ GEGCLSV
Sbjct: 77 ANQVGWNKRATYIHFND----------EAKEHHYLLINPHIIKRSSEIAYLNPGEGCLSV 126
Query: 135 DREVPGYVVRHARVTIEYFDKTGEKH-RLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNP 193
D + GYV+R+ +V ++ +D E+ + G +I +QHEI H+D ++YD IN++ P
Sbjct: 127 DDDRSGYVIRNKKVHVKAYDLISEQFIDQEFSGIIAICIQHEIGHLDAGLYYDNINQQQP 186
Query: 194 F 194
F
Sbjct: 187 F 187
>gi|24215138|ref|NP_712619.1| Polypeptide deformylase [Leptospira
interrogans serovar lai str. 56601]
gi|23396549|sp|Q93LE9|DEF_LEPIN Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|14626937|gb|AAK70806.1| peptide deformylase [Leptospira
interrogans]
gi|24196204|gb|AAN49637.1|AE011411_8 Polypeptide deformylase
[Leptospira interrogans serovar lai str. 56601]
Length = 178
Score = 85.9 bits (211), Expect = 3e-16
Identities = 60/187 (32%), Positives = 101/187 (53%), Gaps = 17/187 (9%)
Query: 14 IDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGL 73
+ + I+R G+P LRK++E VT ++EI ++ + ++ D + + GVGL
Sbjct: 1 MSVRKILRMGDPILRKISEPVT-----EDEIQTKEFKKLIRDMFDTMRHAE-----GVGL 50
Query: 74 AAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLS 133
AAPQ+ I K+I+ V + E G P + ++ NP V++ +D + EGCLS
Sbjct: 51 AAPQIGILKQIVVVGSEDNERYPGTPDVP----ERIILNP-VITPLTKDTS-GFWEGCLS 104
Query: 134 VDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNP 193
V + GYV R ++ +++ D+ G + + GY +IV QHE DH+ GI++ DR+ +
Sbjct: 105 VP-GMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKL 163
Query: 194 FAVKEGL 200
F E L
Sbjct: 164 FGFNETL 170
>gi|13507984|ref|NP_109933.1| polypeptide deformylase, probably
excreted form [Mycoplasma pneumoniae]
gi|2499923|sp|P75527|DEF_MYCPN Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|2146506|pir||S73913 polypeptide deformylase def - Mycoplasma
pneumoniae (strain ATCC 29342)
gi|1674288|gb|AAB96235.1| polypeptide deformylase, probably
excreted form [Mycoplasma pneumoniae]
Length = 216
Score = 84.3 bits (207), Expect = 1e-15
Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 22/187 (11%)
Query: 16 MNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAA 75
++D+ PT + V FPL + KMM ++ S + AEK G+ G+G+AA
Sbjct: 35 LDDVKEINEPT-----KPVQFPLDQASLDCIAKMMAYVDASYNG-DAEKYGIIPGIGIAA 88
Query: 76 PQLDISKRI--IAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLS 133
Q+ K++ I ++ VE + ++ NPK+++ S + L GEGCLS
Sbjct: 89 NQIGYWKQMFYIHLMDGGVEH------------KCLLINPKIINLSANKSFLKSGEGCLS 136
Query: 134 VDREVPGYVVRHARVTIEYFDKTGEKH-RLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
V + GYV+RH +TI FD +K + G + +QHE DH+ G +Y RIN N
Sbjct: 137 VPKMHQGYVIRHEWITITGFDWLQQKEITITATGLFGMCLQHEFDHLQGRFYYHRINPLN 196
Query: 193 P-FAVKE 198
P F KE
Sbjct: 197 PLFTNKE 203
>gi|17229499|ref|NP_486047.1| polypeptide deformylase [Nostoc sp.
PCC 7120]
gi|23396565|sp|Q8YVH1|DEF2_ANASP Peptide deformylase 2 (PDF 2)
(Polypeptide deformylase 2)
gi|25303730|pir||AI2056 polypeptide deformylase [imported] - Nostoc
sp. (strain PCC 7120)
gi|17131097|dbj|BAB73706.1| polypeptide deformylase [Nostoc sp. PCC
7120]
Length = 179
Score = 78.2 bits (191), Expect = 7e-14
Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 23/172 (13%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
II+ GNPTLR+ A V E I + Q + D ++A + GVG+A+PQ+
Sbjct: 8 IIQLGNPTLRQKAAWV-------ENIHDATIQQLI----DDLIA-TVAKANGVGIASPQV 55
Query: 79 DISKRIIAVLVPNVEDAQGNP--PKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDR 136
S R+ V ++ NP P M NPK+V HS + + EGCLSV
Sbjct: 56 AQSYRLFIVA------SRPNPRYPHAPEMEPTAMINPKIVGHSTE--IVEGWEGCLSVP- 106
Query: 137 EVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
+ G V RH + +EY D+ G + L + + + QHE DH+DG++F DR+
Sbjct: 107 GIRGLVPRHQAIEVEYTDRYGNLQKQTLTDFVARIFQHEFDHLDGVLFIDRV 158
>gi|23613598|ref|NP_704619.1| formylmethionine deformylase, putative
[Plasmodium falciparum 3D7]
gi|23504979|emb|CAD51762.1| formylmethionine deformylase, putative
[Plasmodium falciparum 3D7]
Length = 241
Score = 77.8 bits (190), Expect = 1e-13
Identities = 61/182 (33%), Positives = 94/182 (51%), Gaps = 24/182 (13%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I++ +P LR+ +EEVT + + + KM + S+ G+GL+APQ+
Sbjct: 67 IVKYPDPILRRRSEEVT-NFDDNLKRVVRKMFDIMYESK------------GIGLSAPQV 113
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
+ISKRII V +A KE + + NP +V S+ L EGCLS +
Sbjct: 114 NISKRII------VWNALYEKRKEEN--ERIFINPSIVEQSLVKLKLI--EGCLSFP-GI 162
Query: 139 PGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKE 198
G V R + V+I Y+D G KH LKG +S + QHE DH++G +F D++ + + V+
Sbjct: 163 EGKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKMTQVDKKKVRP 222
Query: 199 GL 200
L
Sbjct: 223 KL 224
>gi|23124904|ref|ZP_00106862.1| hypothetical protein [Nostoc
punctiforme]
Length = 190
Score = 77.4 bits (189), Expect = 1e-13
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 21/177 (11%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
+ ++ II+ GNPTLR+ A V E + +K +Q L +A+ GVG
Sbjct: 15 MTELAPIIQLGNPTLRQKAVWV--------ENIQDKHIQKLIEDLIATVAKA----NGVG 62
Query: 73 LAAPQLDISKRIIAVLV-PNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGC 131
+AAPQ+ S R+ V PN N P+ + M NPK+++HS + + D EGC
Sbjct: 63 IAAPQVAQSYRLFIVASRPNAR--YPNAPEMEPT---AMINPKIIAHSTE--VVKDWEGC 115
Query: 132 LSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
LSV + G V R+ + +EY D G + +L + + + QHE DH+DGI+F DR+
Sbjct: 116 LSVP-GIRGLVPRYKSIEVEYTDCQGNLQKQELTDFIARIFQHEYDHLDGIVFVDRL 171
>gi|1169265|sp|P43522|DEF_THETH Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|602914|emb|CAA55695.1| N-formylmethionylaminoacyl-tRNA
deformylase [Thermus thermophilus]
Length = 192
Score = 76.3 bits (186), Expect = 3e-13
Identities = 59/169 (34%), Positives = 91/169 (52%), Gaps = 21/169 (12%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISK 82
G+P LR+ A V E+ G K + ++D M E + GVGLAAPQ+ +S+
Sbjct: 9 GDPVLRRKARPV-------EDFSGIKRL-----AED--MLETMFEAKGVGLAAPQIGLSQ 54
Query: 83 RIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV---QDAALSDGEGCLSVDREVP 139
R+ VE A +E L+E++ VV++ V ++ + EGCLS+
Sbjct: 55 RLFVA----VEYADEPEGEEERPLRELVRRVYVVANPVITYREGLVEGTEGCLSLPGLYS 110
Query: 140 GYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
V R R+ +EY D+ G L+L+GY + V QHEIDH+DGI+F++R+
Sbjct: 111 EEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERL 159
>gi|1072950|pir||A55228 fms protein homolog - Thermus aquaticus
(fragment)
Length = 191
Score = 76.3 bits (186), Expect = 3e-13
Identities = 59/169 (34%), Positives = 91/169 (52%), Gaps = 21/169 (12%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISK 82
G+P LR+ A V E+ G K + ++D M E + GVGLAAPQ+ +S+
Sbjct: 8 GDPVLRRKARPV-------EDFSGIKRL-----AED--MLETMFEAKGVGLAAPQIGLSQ 53
Query: 83 RIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV---QDAALSDGEGCLSVDREVP 139
R+ VE A +E L+E++ VV++ V ++ + EGCLS+
Sbjct: 54 RLFVA----VEYADEPEGEEERPLRELVRRVYVVANPVITYREGLVEGTEGCLSLPGLYS 109
Query: 140 GYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
V R R+ +EY D+ G L+L+GY + V QHEIDH+DGI+F++R+
Sbjct: 110 EEVPRAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERL 158
>gi|17433051|sp|Q9FV53|DEFM_ARATH Peptide deformylase, mitochondrial
precursor (PDF) (Polypeptide deformylase)
gi|25518549|pir||E86288 hypothetical protein F9L1.34 - Arabidopsis
thaliana
gi|5103837|gb|AAD39667.1|AC007591_32 Simalar to gi|4377403
Polypeptide Deformylase from Chlamydia pneumoniae genome
gb|AE001687. [Arabidopsis thaliana]
gi|13605760|gb|AAK32873.1|AF361861_1 At1g15390/F9L1_34 [Arabidopsis
thaliana]
gi|22136570|gb|AAM91071.1| At1g15390/F9L1_34 [Arabidopsis thaliana]
Length = 259
Score = 75.1 bits (183), Expect = 6e-13
Identities = 56/182 (30%), Positives = 94/182 (50%), Gaps = 22/182 (12%)
Query: 14 IDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGL 73
+D+ +I+ G+P L + A EV + EI E++ + + M + + L GVGL
Sbjct: 68 VDLPEIVASGDPVLHEKAREV-----DPGEIGSERIQKIIDD-----MIKVMRLAPGVGL 117
Query: 74 AAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQE-------VMYNPKVVSHSVQDAALS 126
AAPQ+ + RII ++ + ++ PKE QE VM NP + S + A
Sbjct: 118 AAPQIGVPLRII--VLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFF 175
Query: 127 DGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
EGCLSVD V R+ V + +D+ G++ + G+ + ++QHE DH+DG ++ D
Sbjct: 176 --EGCLSVD-GFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVD 232
Query: 187 RI 188
++
Sbjct: 233 KM 234
>gi|18394237|ref|NP_563974.1| peptide deformylase-related protein
[Arabidopsis thaliana]
gi|11320952|gb|AAG33973.1|AF250959_1 peptide deformylase-like
protein [Arabidopsis thaliana]
Length = 269
Score = 75.1 bits (183), Expect = 7e-13
Identities = 56/182 (30%), Positives = 94/182 (50%), Gaps = 22/182 (12%)
Query: 14 IDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGL 73
+D+ +I+ G+P L + A EV + EI E++ + + M + + L GVGL
Sbjct: 78 VDLPEIVASGDPVLHEKAREV-----DPGEIGSERIQKIIDD-----MIKVMRLAPGVGL 127
Query: 74 AAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQE-------VMYNPKVVSHSVQDAALS 126
AAPQ+ + RII ++ + ++ PKE QE VM NP + S + A
Sbjct: 128 AAPQIGVPLRII--VLEDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFF 185
Query: 127 DGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
EGCLSVD V R+ V + +D+ G++ + G+ + ++QHE DH+DG ++ D
Sbjct: 186 --EGCLSVD-GFRAAVERYLEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVD 242
Query: 187 RI 188
++
Sbjct: 243 KM 244
>gi|15603424|ref|NP_246498.1| Def [Pasteurella multocida]
gi|13431442|sp|P57948|DEF_PASMU Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|12721951|gb|AAK03643.1| Def [Pasteurella multocida]
Length = 170
Score = 75.1 bits (183), Expect = 7e-13
Identities = 53/144 (36%), Positives = 84/144 (57%), Gaps = 15/144 (10%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + L G+GLAA Q++I +RII + +VE + N Q V+ NP+++ S
Sbjct: 35 MFETMYLEEGIGLAATQVNIHQRIITI---DVEGTKEN--------QYVLINPEIID-SC 82
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
+ + EGCLS+ G+V R +VTI+ D+ GE++ L +G +I +QHEIDH++
Sbjct: 83 GETGIE--EGCLSLP-GFRGFVPRKEKVTIKALDRHGEEYTLSAEGLLAICIQHEIDHLN 139
Query: 181 GIMFYDRINEKNPFAVKEGLLILE 204
GI+F D ++ +KE LL L+
Sbjct: 140 GIVFADYLSPLKRQRMKEKLLKLQ 163
>gi|23487628|gb|EAA21104.1| polypeptide deformylase, putative
[Plasmodium yoelii yoelii]
Length = 236
Score = 74.7 bits (182), Expect = 8e-13
Identities = 49/128 (38%), Positives = 68/128 (52%), Gaps = 11/128 (8%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GL+APQ++ISKRII + + N + V NP +V S L E
Sbjct: 100 GIGLSAPQVNISKRIIVWNALYEKRDEKN--------ERVFINPLIVQESAVKNKLI--E 149
Query: 130 GCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
GCLS + V R A V+I Y+D G KH LKG ++ V QHE DH++G++F DRI
Sbjct: 150 GCLSFP-NIEAKVERPAIVSISYYDINGNKHLKILKGIHARVFQHEYDHLNGVLFIDRIT 208
Query: 190 EKNPFAVK 197
+ +K
Sbjct: 209 QTEKQKIK 216
>gi|17433049|sp|Q9FUZ0|DEFM_LYCES Peptide deformylase, mitochondrial
precursor (PDF) (Polypeptide deformylase)
gi|11320968|gb|AAG33981.1|AF271258_1 peptide deformylase-like
protein [Lycopersicon esculentum]
Length = 277
Score = 74.3 bits (181), Expect = 1e-12
Identities = 56/182 (30%), Positives = 96/182 (51%), Gaps = 26/182 (14%)
Query: 16 MNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAA 75
M DI++ G+P L + ++++ PL EEI E++ + ++ M + + GVGLAA
Sbjct: 88 MPDIVKAGDPVLHEPSQDI--PL---EEIGSERIQKIIEE-----MVKVMRNAPGVGLAA 137
Query: 76 PQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQE-------VMYNPKVVSHSVQDAALSDG 128
PQ+ I +II ++ + + PK+ Q+ V+ NPK+ + A
Sbjct: 138 PQIGIPLKII--VLEDTNEYISYAPKDETKAQDRRPFGLLVIINPKLKKKGNKTALFF-- 193
Query: 129 EGCLSVD--REVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
EGCLSVD R V V RH V + D+ G+ ++ G+ + ++QHE DH+DG ++ D
Sbjct: 194 EGCLSVDGFRAV---VERHLEVEVTGLDRNGKAIKVDASGWQARILQHEYDHLDGTLYVD 250
Query: 187 RI 188
++
Sbjct: 251 KM 252
>gi|15639744|ref|NP_219194.1| polypeptide deformylase (def)
[Treponema pallidum]
gi|6014952|sp|O83738|DEF_TREPA Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|7445087|pir||H71284 probable polypeptide deformylase (def) -
syphilis spirochete
gi|3323063|gb|AAC65724.1| polypeptide deformylase (def) [Treponema
pallidum]
Length = 162
Score = 73.2 bits (178), Expect = 2e-12
Identities = 57/169 (33%), Positives = 85/169 (49%), Gaps = 30/169 (17%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISK 82
G P L V+E P+SE + E++ F+ M + GGVGLAAPQ+ +
Sbjct: 7 GEPCLTTVSE----PVSE----VDEQLRAFISG-----MFRVMRGAGGVGLAAPQVGRTV 53
Query: 83 RIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYV 142
R+ V V + A NP A S ++ Y EGCLS+ + V
Sbjct: 54 RVFVVDVEHHVRAFINPQITAASEEQSSYE----------------EGCLSIP-HIYERV 96
Query: 143 VRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEK 191
+R RV+++Y D+ G++ + G + V+QHE DH+DGI+F DRI+EK
Sbjct: 97 LRPRRVSVQYLDENGKRCAVDADGILARVIQHEYDHLDGILFLDRIDEK 145
>gi|23131065|ref|ZP_00112850.1| hypothetical protein
[Prochlorococcus marinus str. MIT 9313]
Length = 194
Score = 72.4 bits (176), Expect = 5e-12
Identities = 59/186 (31%), Positives = 97/186 (51%), Gaps = 26/186 (13%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
++ + +I+R GNP LRKV+ V ++ E ++ +K QD + A + G G
Sbjct: 2 IMAVKEILRMGNPQLRKVSNVV-------DDASDELIISLIKDLQDTVKAHQ-----GAG 49
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPK--EAYSL-QEVMYNPKVVSHSVQDAALSDG- 128
LAAPQ+ + R++ G P+ EA S+ Q ++ NP + + L DG
Sbjct: 50 LAAPQIGVPLRVVLF------GGGGPNPRYPEAPSIPQTLLINPVLTPIG---SDLEDGW 100
Query: 129 EGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
EGCLSV + G V R +R+ ++ G + L+G+ + V+QHE DH+DG++F DR+
Sbjct: 101 EGCLSVP-GLRGKVSRWSRIHYRALNEDGFEVEHCLEGFPARVIQHECDHLDGVLFPDRL 159
Query: 189 NEKNPF 194
+ F
Sbjct: 160 VDSASF 165
>gi|23001158|ref|ZP_00045069.1| hypothetical protein [Magnetococcus
sp. MC-1]
Length = 177
Score = 71.6 bits (174), Expect = 7e-12
Identities = 43/120 (35%), Positives = 74/120 (60%), Gaps = 9/120 (7%)
Query: 69 GGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDG 128
G VGLAAPQ+D + R++ V N A+ PP E + + ++ NP+++S + A
Sbjct: 47 GCVGLAAPQVDHAIRMVVV---NCGLAR-KPPDEHHG-ELILCNPEIISWEGMETAR--- 98
Query: 129 EGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
EGC+SV + G V+R +++++ D+ G++ KG+ + VVQHE+DH++G +F DR+
Sbjct: 99 EGCMSVP-DYTGNVMRATHISVQFQDRHGQEQVRHFKGFEARVVQHEMDHLEGKLFTDRV 157
>gi|23016537|ref|ZP_00056292.1| hypothetical protein
[Magnetospirillum magnetotacticum]
Length = 170
Score = 71.6 bits (174), Expect = 7e-12
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 12/129 (9%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + G+GLAAPQ+ + +R+I + + E+ + P + M NP+++ S
Sbjct: 35 MLETMYHAPGIGLAAPQIGVLERVIVMDIGRKEEDRA-PIR--------MVNPEIIWASD 85
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
+D EGCLSV VVR A V + Y D+TG K L +G + VVQHE+DH+D
Sbjct: 86 EDNTYE--EGCLSVPEHYSN-VVRPASVKVRYLDETGAKQELLAEGLLATVVQHEMDHLD 142
Query: 181 GIMFYDRIN 189
G++F D ++
Sbjct: 143 GVLFIDHLS 151
>gi|16272565|ref|NP_438782.1| polypeptide deformylase [Haemophilus
influenzae Rd]
gi|1169264|sp|P44786|DEF_HAEIN Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|1075161|pir||D64082 N-formylmethionylaminoacyl-tRNA deformylase
(EC 3.5.1.27) - Haemophilus influenzae (strain Rd KW20)
gi|1573618|gb|AAC22282.1| polypeptide deformylase (def)
[Haemophilus influenzae Rd]
Length = 169
Score = 70.9 bits (172), Expect = 1e-11
Identities = 48/135 (35%), Positives = 76/135 (55%), Gaps = 21/135 (15%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAAPQ+DI +RII + +VE + N Q V+ NP++++ + E
Sbjct: 44 GIGLAAPQVDILQRIITI---DVEGDKQN--------QFVLINPEILA---SEGETGIEE 89
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS +PG+ V R +VT+ D+ G++ L G +I +QHEIDH++GI+F D
Sbjct: 90 GCLS----IPGFRALVPRKEKVTVRALDRDGKEFTLDADGLLAICIQHEIDHLNGILFVD 145
Query: 187 RINEKNPFAVKEGLL 201
++ +KE L+
Sbjct: 146 YLSPLKRQRIKEKLI 160
>gi|20150600|pdb|1JYM|A Chain A, Crystals Of Peptide Deformylase
From Plasmodium Falciparum With Ten Subunits Per
Asymmetric Unit Reveal Critical Characteristics Of The
Active Site For Drug Design
gi|20150601|pdb|1JYM|B Chain B, Crystals Of Peptide Deformylase
From Plasmodium Falciparum With Ten Subunits Per
Asymmetric Unit Reveal Critical Characteristics Of The
Active Site For Drug Design
gi|20150602|pdb|1JYM|C Chain C, Crystals Of Peptide Deformylase
From Plasmodium Falciparum With Ten Subunits Per
Asymmetric Unit Reveal Critical Characteristics Of The
Active Site For Drug Design
gi|20150603|pdb|1JYM|D Chain D, Crystals Of Peptide Deformylase
From Plasmodium Falciparum With Ten Subunits Per
Asymmetric Unit Reveal Critical Characteristics Of The
Active Site For Drug Design
gi|20150604|pdb|1JYM|E Chain E, Crystals Of Peptide Deformylase
From Plasmodium Falciparum With Ten Subunits Per
Asymmetric Unit Reveal Critical Characteristics Of The
Active Site For Drug Design
gi|20150605|pdb|1JYM|F Chain F, Crystals Of Peptide Deformylase
From Plasmodium Falciparum With Ten Subunits Per
Asymmetric Unit Reveal Critical Characteristics Of The
Active Site For Drug Design
gi|20150606|pdb|1JYM|G Chain G, Crystals Of Peptide Deformylase
From Plasmodium Falciparum With Ten Subunits Per
Asymmetric Unit Reveal Critical Characteristics Of The
Active Site For Drug Design
gi|20150607|pdb|1JYM|H Chain H, Crystals Of Peptide Deformylase
From Plasmodium Falciparum With Ten Subunits Per
Asymmetric Unit Reveal Critical Characteristics Of The
Active Site For Drug Design
gi|20150608|pdb|1JYM|I Chain I, Crystals Of Peptide Deformylase
From Plasmodium Falciparum With Ten Subunits Per
Asymmetric Unit Reveal Critical Characteristics Of The
Active Site For Drug Design
gi|20150609|pdb|1JYM|J Chain J, Crystals Of Peptide Deformylase
From Plasmodium Falciparum With Ten Subunits Per
Asymmetric Unit Reveal Critical Characteristics Of The
Active Site For Drug Design
Length = 183
Score = 70.9 bits (172), Expect = 1e-11
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 12/131 (9%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GL+APQ++ISKRII V +A KE + + NP +V S+ L E
Sbjct: 42 GIGLSAPQVNISKRII------VWNALYEKRKEEN--ERIFINPSIVEQSLVKLKLI--E 91
Query: 130 GCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
GCLS E G V R + V+I Y+D G KH LKG +S + QHE DH++G +F D+
Sbjct: 92 GCLSFGIE--GKVERPSIVSISYYDINGYKHLKILKGIHSRIFQHEFDHLNGTLFIDKXT 149
Query: 190 EKNPFAVKEGL 200
+ + V+ L
Sbjct: 150 QVDKKKVRPKL 160
>gi|21674275|ref|NP_662340.1| polypeptide deformylase [Chlorobium
tepidum TLS]
gi|25452909|sp|Q8KCG7|DEF_CHLTE Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|21647445|gb|AAM72682.1| polypeptide deformylase [Chlorobium
tepidum TLS]
Length = 187
Score = 70.1 bits (170), Expect = 2e-11
Identities = 45/131 (34%), Positives = 78/131 (59%), Gaps = 11/131 (8%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAAPQ+ S R++ V + +++ P V+ NP++V +V+ +L + E
Sbjct: 43 GIGLAAPQVGHSLRLVVVDISTIKEYADFKPM-------VVINPRIV--AVRGRSLME-E 92
Query: 130 GCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
GCLSV + G VVR + +T+ Y D+ E+H + V+QHEIDH+DG +F DR++
Sbjct: 93 GCLSVP-GIAGNVVRPSAITLHYRDEKFEEHTADFHSMMARVLQHEIDHLDGTLFVDRMD 151
Query: 190 EKNPFAVKEGL 200
+++ +++ L
Sbjct: 152 KRDRRKIQKEL 162
>gi|22973042|ref|ZP_00019888.1| hypothetical protein [Chloroflexus
aurantiacus]
Length = 188
Score = 69.7 bits (169), Expect = 3e-11
Identities = 49/136 (36%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPN--VEDAQGNPPKEAYSLQEVMYNPKVVSH 118
M E + GVGLAAPQ+ I ++ + +P E A G+ + A + V+ NP++V
Sbjct: 39 MFETMRAAHGVGLAAPQIGIPIQLCIIEIPAEYEERADGSVVEVAPAEPYVLINPRIVKM 98
Query: 119 SVQDAALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKG-YNSIVVQH 174
S ++ EGCLS +PG+ V R VT+E+ D G+ HRL+ G +QH
Sbjct: 99 SGEEVMRD--EGCLS----LPGWYGMVPRQTWVTVEFQDLNGKHHRLRRAGDLLGWAIQH 152
Query: 175 EIDHIDGIMFYDRINE 190
E+DH++GI+F +RI +
Sbjct: 153 EVDHLNGILFTERIRD 168
>gi|23121947|ref|ZP_00104082.1| hypothetical protein
[Prochlorococcus marinus subsp. pastoris str. CCMP1378]
Length = 201
Score = 69.3 bits (168), Expect = 4e-11
Identities = 57/204 (27%), Positives = 100/204 (48%), Gaps = 34/204 (16%)
Query: 2 SAIDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIM 61
S I+K+ K +I + G+ LR+ A+ ++ + L + M+Q + ++
Sbjct: 16 SPIEKVSKEQTGTPSLEIYKLGDDVLRENAKRIS-KVDNSIRNLAKDMLQSMYAAK---- 70
Query: 62 AEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQ 121
G+GLAAPQ+ I K ++ + V N EDA P ++ NP++ +
Sbjct: 71 --------GIGLAAPQIGIKKELLVIDV-NFEDAAAEP--------LILINPEITDYGTT 113
Query: 122 DAALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDH 178
+ EGCLS +PG VVR + + + + D+ G ++K G + +QHE+DH
Sbjct: 114 LNSYE--EGCLS----IPGVYLNVVRPSTIKLRFRDEMGRPRKMKADGLLARCIQHEMDH 167
Query: 179 IDGIMFYDRINEK---NPFAVKEG 199
++G++F DR+ K N +KEG
Sbjct: 168 LNGVLFVDRVTSKEDLNKELIKEG 191
>gi|32266068|ref|NP_860100.1| N-formylmethionyl-tRNA deformylase
[Helicobacter hepaticus ATCC 51449]
gi|32262117|gb|AAP77166.1| N-formylmethionyl-tRNA deformylase
[Helicobacter hepaticus ATCC 51449]
Length = 181
Score = 69.3 bits (168), Expect = 4e-11
Identities = 54/173 (31%), Positives = 91/173 (52%), Gaps = 28/173 (16%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I++ N LRK + V EI + + FL + ++ K GVGLAA Q+
Sbjct: 13 ILKYPNALLRKKSIPV--------EIFDDNLHNFLDDMYETLIESK-----GVGLAAIQV 59
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
++RI+ + +P ED Q + L E++ NP ++ Q+ + EGCLS V
Sbjct: 60 GRAERILIINIPREEDKQ----QYKEDLLEII-NPTFLT---QEECVEWEEGCLS----V 107
Query: 139 PGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
P + + R +V+I Y D+ G LK +G+ ++ +QHEIDH++G++F D++
Sbjct: 108 PDFYESIKRFDKVSIAYKDRYGNDRILKAQGFLAVAIQHEIDHLNGVLFVDKL 160
>gi|31196413|ref|XP_307154.1| ENSANGP00000012713 [Anopheles gambiae]
gi|21290819|gb|EAA02964.1| ENSANGP00000012713 [Anopheles gambiae
str. PEST]
Length = 232
Score = 69.3 bits (168), Expect = 4e-11
Identities = 56/182 (30%), Positives = 95/182 (51%), Gaps = 24/182 (13%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFL-KHSQDPIMAEKLGLRGGVGLAAPQ 77
I++ G+P LR A + EKE L +Q+L +H + A + VGLAAPQ
Sbjct: 44 IVQLGDPVLRVPANAI----PEKE--LQSAEVQYLARHLTKVMRAYRC-----VGLAAPQ 92
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQE-------VMYNPKVVSHSVQDAALSDGEG 130
L +S R A ++ ++ + K Y L+E ++ NP++ + + + E
Sbjct: 93 LGLSLR--AFVMEFKDELRDQYTKADYKLREMEPLPLTILLNPELKVLNYEKVIHT--EA 148
Query: 131 CLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE 190
C SV R V R+ + ++ FD TG + L+L G+N+ + QHE+DH++GI++ D +N
Sbjct: 149 CESV-RGYRADVPRYREILLQGFDATGNRQELRLSGWNARIAQHEMDHLNGIVYTDIMNR 207
Query: 191 KN 192
K+
Sbjct: 208 KS 209
>gi|31202945|ref|XP_310421.1| ENSANGP00000017891 [Anopheles gambiae]
gi|21293890|gb|EAA06035.1| ENSANGP00000017891 [Anopheles gambiae
str. PEST]
Length = 232
Score = 69.3 bits (168), Expect = 4e-11
Identities = 56/182 (30%), Positives = 95/182 (51%), Gaps = 24/182 (13%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFL-KHSQDPIMAEKLGLRGGVGLAAPQ 77
I++ G+P LR A + EKE L +Q+L +H + A + VGLAAPQ
Sbjct: 44 IVQLGDPVLRVPANAI----PEKE--LQSAEVQYLARHLTKVMRAYRC-----VGLAAPQ 92
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQE-------VMYNPKVVSHSVQDAALSDGEG 130
L +S R A ++ ++ + K Y L+E ++ NP++ + + + E
Sbjct: 93 LGLSLR--AFVMEFKDELRDQYTKADYKLREMEPLPLTILLNPELKVLNYEKVIHT--EA 148
Query: 131 CLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE 190
C SV R V R+ + ++ FD TG + L+L G+N+ + QHE+DH++GI++ D +N
Sbjct: 149 CESV-RGYRADVPRYREILLQGFDATGNRQELRLSGWNARIAQHEMDHLNGIVYTDIMNR 207
Query: 191 KN 192
K+
Sbjct: 208 KS 209
>gi|32041132|ref|ZP_00138715.1| hypothetical protein [Pseudomonas
aeruginosa UCBPP-PA14]
Length = 179
Score = 68.9 bits (167), Expect = 5e-11
Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 23/188 (12%)
Query: 16 MNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAA 75
+ +I++ G+ L ++A+ V E+LG + +Q L M E + GGVGLAA
Sbjct: 2 IREILKMGDERLLRIAQPV------PSELLGSEELQRLIDD----MFETMHHVGGVGLAA 51
Query: 76 PQLDISKRIIAVLVPNVE---DAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
PQ+ + +++ E DA PP ++ NP++ + D EGCL
Sbjct: 52 PQIGVDLQLVIFGFERSERYPDAPAVPPT-------ILLNPRIT--PLDDEMEEGWEGCL 102
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SV + G V RH R+ + D G+ ++G+++ VVQHE DH+ G ++ RI + +
Sbjct: 103 SVP-GLRGAVSRHRRIRYQGLDPQGQPIDRSVEGFHARVVQHECDHLIGRLYPSRITDFS 161
Query: 193 PFAVKEGL 200
F E L
Sbjct: 162 KFGFTEVL 169
>gi|25029133|ref|NP_739187.1| putative polypeptide deformylase
[Corynebacterium efficiens YS-314]
gi|23494420|dbj|BAC19387.1| putative polypeptide deformylase
[Corynebacterium efficiens YS-314]
Length = 193
Score = 68.6 bits (166), Expect = 6e-11
Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 31/176 (17%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I+ G+P L EVT P+SE +E++ + M E + + GVGLAA Q+
Sbjct: 6 IVIHGDPVLHNPTREVTEPISELQELIAD-------------MYETMEVANGVGLAANQI 52
Query: 79 DISKRIIAVLVPNVEDAQG-----NPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLS 133
+SKRI P+ E NP E + E M D SD EGCLS
Sbjct: 53 GVSKRIFVFNCPDDEGTMHRGCFINPVLETSEIPETM--------PADDG--SDEEGCLS 102
Query: 134 VDRE-VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
V E P A+VT ++ GE+ ++ G+ + QHE+ H+DG+++ D +
Sbjct: 103 VPGEGFPTGRADWAKVT--GLNEDGEEWSMEGTGFLARCFQHEVGHLDGVVYTDTL 156
>gi|23113907|ref|ZP_00099244.1| hypothetical protein
[Desulfitobacterium hafniense]
Length = 150
Score = 68.6 bits (166), Expect = 7e-11
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 18/127 (14%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M + L GVGLAAPQ+ +SKR++ + V G P E + NP +++
Sbjct: 35 MLDTLYDANGVGLAAPQVGVSKRVVVIDV-------GEGPLE-------LINPVIIAKEG 80
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
+D D EGCLS+ + G V R A+V +E ++ GE ++ +G S +QHEIDH++
Sbjct: 81 EDL---DDEGCLSIP-GITGQVARAAKVKVEALNRQGELQVIEGEGLLSRCLQHEIDHLE 136
Query: 181 GIMFYDR 187
GI+F D+
Sbjct: 137 GILFVDK 143
>gi|23000048|ref|ZP_00043996.1| hypothetical protein [Magnetococcus
sp. MC-1]
Length = 195
Score = 68.6 bits (166), Expect = 7e-11
Identities = 54/171 (31%), Positives = 86/171 (49%), Gaps = 23/171 (13%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I+ +P L+K AE V + ++++ + M E + G+GLAAPQ+
Sbjct: 28 IVTAPDPVLKKRAEPVVAVDASIQQLMRD-------------MLETMYAAPGIGLAAPQV 74
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
+SKR+I V V E A + E Y L NP++++ + ++ EGCLSV E
Sbjct: 75 GVSKRVIVVDVTYSEAAAQD--GEPYCLA----NPEIIA---AEGEITWEEGCLSVP-ES 124
Query: 139 PGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
G V R V + + GE L+ G ++ +QHEIDH+DG +F D ++
Sbjct: 125 YGKVDRKEHVVVRGLNAQGELVTLEAHGLFAVCLQHEIDHLDGTLFIDHLS 175
>gi|29345830|ref|NP_809333.1| peptide deformylase(PDF) [Bacteroides
thetaiotaomicron VPI-5482]
gi|29337723|gb|AAO75527.1| peptide deformylase(PDF) [Bacteroides
thetaiotaomicron VPI-5482]
Length = 184
Score = 68.2 bits (165), Expect = 8e-11
Identities = 53/171 (30%), Positives = 87/171 (49%), Gaps = 28/171 (16%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISK 82
G P LRKVAE++T +E++ M + + H+ GVGLAAPQ+ +
Sbjct: 9 GQPVLRKVAEDITPEYPNLKELIA-NMFETMVHAD------------GVGLAAPQIGLPI 55
Query: 83 RIIAV-LVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY 141
R++ + L P ED E + NP ++ ++ ++ EGCLS +PG
Sbjct: 56 RVVTITLDPLSEDY-----PEFKDFNKAYINPHIIEVGGEEVSME--EGCLS----LPGI 104
Query: 142 ---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
V R ++ ++Y D+ +H ++GY + V+QHE DH+DG MF D ++
Sbjct: 105 HESVKRGNKIRVKYMDENFVEHDEVVEGYLARVMQHEFDHLDGKMFIDHLS 155
>gi|32307482|gb|AAP79146.1| peptide deformylase [Bigelowiella
natans]
Length = 315
Score = 68.2 bits (165), Expect = 8e-11
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 30/190 (15%)
Query: 18 DIIREGNPTLRKVAEEVT---FPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLA 74
++I+ +P LR E++T PL E L ++M + G GLA
Sbjct: 123 NVIKYPDPRLRTENEKITEFGKPLQE----LADEMFDVMYDDD------------GCGLA 166
Query: 75 APQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSV 134
APQ+ I+ R++ V + QG+ K+ + V+ NP+++S + EGCLS
Sbjct: 167 APQVGINYRLM------VFNPQGDRRKKDTEM--VLANPEIISSGEEKDWFR--EGCLSF 216
Query: 135 DREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPF 194
+ G V R +V I D GE +L+G+ + V QHE DH+ G +F+DR+ +K
Sbjct: 217 P-GIRGQVERPTKVLIRAQDVKGEDIEFELEGFTARVFQHEYDHLSGTLFHDRMPDKEVA 275
Query: 195 AVKEGLLILE 204
+ L+ LE
Sbjct: 276 EIHAKLVTLE 285
>gi|23054279|ref|ZP_00080446.1| hypothetical protein [Geobacter
metallireducens]
Length = 168
Score = 67.8 bits (164), Expect = 1e-10
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 9/120 (7%)
Query: 69 GGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDG 128
G VG+AAPQ+ + R+ V V KE VM NP++V ++ A
Sbjct: 44 GSVGVAAPQIGATLRVCVVDVSGSRHG-----KENNHGVLVMVNPEIVH---REGAAIMR 95
Query: 129 EGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
EGC+SV + G V R +T+ + D G + + G+ ++ +QHE+DH+DGI+F DRI
Sbjct: 96 EGCMSVP-DYTGDVERATTITVRFRDGEGTEREISASGFEAVAIQHEMDHLDGILFLDRI 154
>gi|23137795|ref|ZP_00119499.1| hypothetical protein [Cytophaga
hutchinsonii]
Length = 184
Score = 67.4 bits (163), Expect = 1e-10
Identities = 53/174 (30%), Positives = 87/174 (49%), Gaps = 28/174 (16%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I+ G+P L+KVA+++ + + +K S D M E + GVGLAAPQ+
Sbjct: 5 IVAYGDPVLKKVAQDIE-----------KGSLDVVKMSAD--MFETMENAHGVGLAAPQV 51
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
++ R+ + +D + P ++ + NP V+ D + EGCLS +
Sbjct: 52 ALNLRMFVIDTSVFDDEKITPVRKTF------INP-VIEEEWGDEWPYE-EGCLS----I 99
Query: 139 PGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
PG V R A + I YFD ++H + G + V+QHE DHI+G++F D ++
Sbjct: 100 PGVRADVYRPANLRIRYFDTDWKEHVEEFDGMTARVIQHEYDHIEGVLFVDHLS 153
>gi|23132076|ref|ZP_00113861.1| hypothetical protein
[Prochlorococcus marinus str. MIT 9313]
Length = 147
Score = 67.0 bits (162), Expect = 2e-10
Identities = 43/131 (32%), Positives = 75/131 (56%), Gaps = 18/131 (13%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAAPQ+ I K+++ VL ++E PP V+ NP+++S S E
Sbjct: 17 GIGLAAPQVGIHKQLL-VLDLDLETPT-TPPV-------VLINPEIISSSATVETYE--E 65
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS +PG VVR + + + + D+ G ++K G + +QHE+DH++G++F D
Sbjct: 66 GCLS----IPGVYLNVVRPSEIVLSFRDEMGRPRKMKADGLMARCIQHEMDHLEGVLFVD 121
Query: 187 RINEKNPFAVK 197
R+ ++N +++
Sbjct: 122 RVTDENELSLE 132
>gi|32029937|ref|ZP_00132881.1| hypothetical protein [Haemophilus
somnus 2336]
Length = 170
Score = 66.6 bits (161), Expect = 2e-10
Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 20/167 (11%)
Query: 38 LSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQG 97
++E + E++ F+ + M E + G+GLAA Q+++ KRII + ++E +
Sbjct: 17 VAEPVSVFDEELQTFIDN-----MFETMYHEEGIGLAATQVNVHKRIITI---DIEGTKE 68
Query: 98 NPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTG 157
N Q V+ NPK++ S + + EGCLS+ + G+V R V ++ ++ G
Sbjct: 69 N--------QIVLINPKIL-ESFGETGIE--EGCLSLP-GLRGFVPRKETVKVKAQNRQG 116
Query: 158 EKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLLILE 204
E+ L G +I +QHEIDH++GI+F D ++ +KE LL L+
Sbjct: 117 EEFMLDADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKLQ 163
>gi|17433050|sp|Q9FUZ2|DEFC_ARATH Peptide deformylase, chloroplast
precursor (PDF) (Polypeptide deformylase)
gi|11320966|gb|AAG33980.1|AF269165_1 peptide deformylase
[Arabidopsis thaliana]
Length = 273
Score = 66.2 bits (160), Expect = 3e-10
Identities = 46/138 (33%), Positives = 76/138 (54%), Gaps = 18/138 (13%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GL+APQ+ ++ +++ V P E +G + V+ NPK+ +S D + E
Sbjct: 121 GIGLSAPQVGLNVQLM-VFNPAGEPGEGK--------EIVLVNPKIKKYS--DKLVPFDE 169
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS PG VVR V I+ D TGE+ + L + + QHE DH++G++F+D
Sbjct: 170 GCLS----FPGIYAEVVRPQSVKIDARDITGERFSISLSSLPARIFQHEYDHLEGVLFFD 225
Query: 187 RINEKNPFAVKEGLLILE 204
R+ ++ +++E L LE
Sbjct: 226 RMTDQVLDSIREELEALE 243
>gi|32477751|ref|NP_870745.1| peptide deformylase [Pirellula sp.]
gi|32448305|emb|CAD77822.1| peptide deformylase [Pirellula sp.]
Length = 201
Score = 66.2 bits (160), Expect = 3e-10
Identities = 58/173 (33%), Positives = 87/173 (49%), Gaps = 26/173 (15%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
II +PTLR V+ + + K + + ++M+ + GVGLAA Q+
Sbjct: 5 IIHFPHPTLRHVSRPIV-RVDAKLKSMADEMLDLMYEFD------------GVGLAANQV 51
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
D+ R+ V P + +G E++ V+ NP++ D A EGCLSV +
Sbjct: 52 DLPIRMF-VANPTGKRDEG----ESW----VILNPEIDRPKGNDTA---QEGCLSVP-GL 98
Query: 139 PGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEK 191
G V R V + FD G + L G+ + VVQHE+DH+DGIMF+DRI E+
Sbjct: 99 YGQVKRPKTVRLRGFDLQGNEINQVLDGFMARVVQHEVDHLDGIMFFDRIGEE 151
>gi|27262480|gb|AAN87521.1| Polypeptide deformylase [Heliobacillus
mobilis]
Length = 166
Score = 65.9 bits (159), Expect = 4e-10
Identities = 50/176 (28%), Positives = 93/176 (52%), Gaps = 31/176 (17%)
Query: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77
+I++ G+P LR+ A+ VT + + + D ++A K GVGLAAPQ
Sbjct: 19 EIVKIGDPVLREKAKTVT--------KFNANLGRLMDDMYDTMVAAK-----GVGLAAPQ 65
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137
+ ISKR++ + +V D + + NP+++ + + D EGCLS+ +
Sbjct: 66 IGISKRVVVI---DVGDGRIE-----------LVNPEILE---AEGSQIDVEGCLSIP-D 107
Query: 138 VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNP 193
V R RV ++ ++ GE++ ++ G+ + +QHEIDH++G++F D +++ P
Sbjct: 108 FQEEVNRSQRVKVKAQNRNGEEYVIEGTGFLARALQHEIDHLEGVLFVDLLDKNVP 163
>gi|15605076|ref|NP_219861.1| Polypeptide Deformylase [Chlamydia
trachomatis]
gi|6831532|sp|O84357|DEF_CHLTR Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|7445090|pir||B71526 probable polypeptide deformylase - Chlamydia
trachomatis (serotype D, strain UW3/Cx)
gi|3328774|gb|AAC67948.1| Polypeptide Deformylase [Chlamydia
trachomatis]
Length = 181
Score = 65.5 bits (158), Expect = 5e-10
Identities = 51/177 (28%), Positives = 87/177 (48%), Gaps = 19/177 (10%)
Query: 16 MNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAA 75
+ D+ +P LRKVA VT E +++ + M+E + GVGLAA
Sbjct: 2 IRDLEYYDSPILRKVAAPVTEITDELRQLVLD-------------MSETMAFYKGVGLAA 48
Query: 76 PQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVD 135
PQ+ S I++ + VE + V NP + S Q + EGCLS+
Sbjct: 49 PQVGQS---ISLFIMGVERELEDGELVFCDFPRVFINPVITQKSEQ--LVYGNEGCLSIP 103
Query: 136 REVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
+ G V R ++T+ + G++ L L+G+ + +V HE DH+ G+++ DR+++K+
Sbjct: 104 -GLRGEVARPDKITVSAKNLDGQQFSLALEGFLARIVMHETDHLHGVLYIDRMSDKD 159
>gi|22966785|ref|ZP_00014380.1| hypothetical protein [Rhodospirillum
rubrum]
Length = 207
Score = 65.5 bits (158), Expect = 5e-10
Identities = 54/182 (29%), Positives = 86/182 (46%), Gaps = 23/182 (12%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I R G P L +A V P K L M++ L S GGVGLAAPQ+
Sbjct: 34 IARMGMPVLAGIARPVEDPTDPKIHRLVADMIETLADS------------GGVGLAAPQV 81
Query: 79 DISKRIIAVLVP--NVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDR 136
+ R++ VP +A+G P V+ NP++ + + + D EGCLS+
Sbjct: 82 HVPLRVMIFHVPANRSTEAEGAVP------LTVLINPQLT--PLGEEMVEDWEGCLSLP- 132
Query: 137 EVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAV 196
+ G V R+ + D G + + + +++ VVQHE DH+DG+++ R+ + + F
Sbjct: 133 GLTGLVPRYRSLRYRGVDLDGREVEREARDFHARVVQHEYDHLDGVLYPRRLRDPSQFGF 192
Query: 197 KE 198
E
Sbjct: 193 VE 194
>gi|15241461|ref|NP_196970.1| peptide deformylase [Arabidopsis
thaliana]
gi|30684999|ref|NP_850821.1| peptide deformylase [Arabidopsis
thaliana]
gi|11358034|pir||T48639 hypothetical protein T15N1.150 -
Arabidopsis thaliana
gi|7573315|emb|CAB87633.1| putative protein [Arabidopsis thaliana]
gi|15292891|gb|AAK92816.1| unknown protein [Arabidopsis thaliana]
gi|20465677|gb|AAM20307.1| unknown protein [Arabidopsis thaliana]
Length = 273
Score = 65.5 bits (158), Expect = 5e-10
Identities = 46/138 (33%), Positives = 76/138 (54%), Gaps = 18/138 (13%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GL+APQ+ ++ +++ V P E +G + V+ NPK+ +S D + E
Sbjct: 121 GIGLSAPQVGLNVQLM-VFNPAGEPGEGK--------EIVLVNPKIKKYS--DKLVPFDE 169
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS PG VVR V I+ D TGE+ + L + + QHE DH++G++F+D
Sbjct: 170 GCLS----FPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFD 225
Query: 187 RINEKNPFAVKEGLLILE 204
R+ ++ +++E L LE
Sbjct: 226 RMTDQVLDSIREELEALE 243
>gi|21553551|gb|AAM62644.1| Formylmethionine deformylase
[Arabidopsis thaliana]
Length = 273
Score = 65.5 bits (158), Expect = 5e-10
Identities = 46/138 (33%), Positives = 76/138 (54%), Gaps = 18/138 (13%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GL+APQ+ ++ +++ V P E +G + V+ NPK+ +S D + E
Sbjct: 121 GIGLSAPQVGLNVQLM-VFNPAGEPGEGK--------EIVLVNPKIKKYS--DKLVPFDE 169
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS PG VVR V I+ D TGE+ + L + + QHE DH++G++F+D
Sbjct: 170 GCLS----FPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFD 225
Query: 187 RINEKNPFAVKEGLLILE 204
R+ ++ +++E L LE
Sbjct: 226 RMTDQVLDSIREELEALE 243
>gi|23041413|ref|ZP_00072871.1| hypothetical protein [Trichodesmium
erythraeum IMS101]
Length = 182
Score = 65.1 bits (157), Expect = 6e-10
Identities = 51/178 (28%), Positives = 94/178 (52%), Gaps = 23/178 (12%)
Query: 13 LIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
++++ + + GN LR A+ V IL + + Q + + ++ GVG
Sbjct: 5 IMEVLQVAQLGNKILRYQAQTVN-------NILDQNVQQLIDNLIFTVIETN-----GVG 52
Query: 73 LAAPQLDISKRIIAVLV-PNVEDAQGNPPKEAYSLQEV-MYNPKVVSHSVQDAALSDGEG 130
+AAPQ+ IS + + PN+ N PK ++ + M NP+++SHS + + EG
Sbjct: 53 IAAPQVSISDCLFIIASRPNIR--YPNAPK----MEPIAMINPRLISHS--EDRVKGWEG 104
Query: 131 CLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
CLS+ + G V R+ + +EY ++ G+ R +L + + + QHE DH++G++F DR+
Sbjct: 105 CLSIP-GIRGLVPRYRVINVEYTNREGKLERQELTDFVARIFQHEYDHLEGLVFLDRV 161
>gi|16330073|ref|NP_440801.1| polypeptide deformylase [Synechocystis
sp. PCC 6803]
gi|2499924|sp|P73441|DEF_SYNY3 Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|7429442|pir||S77378 polypeptide deformylase def - Synechocystis
sp. (strain PCC 6803)
gi|1652560|dbj|BAA17481.1| polypeptide deformylase [Synechocystis
sp. PCC 6803]
Length = 187
Score = 65.1 bits (157), Expect = 7e-10
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 14/140 (10%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M + + G+GLAAPQ+ I+K+++ V D + + P E +M NP++ S
Sbjct: 48 MLQTMYSANGIGLAAPQVGINKQLLVV------DCEQDKPDEP---PLIMINPQITRTSE 98
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
+ + EGCLSV V V R + + Y D+ G + + V+QHE+DH++
Sbjct: 99 ELCVVE--EGCLSVP-NVYMDVTRPRAIEVTYKDEHGRPQKRLFAELTARVIQHEMDHLN 155
Query: 181 GIMFYDRINEKNPFAVKEGL 200
G+MF DR++ NP A+ E L
Sbjct: 156 GVMFVDRVD--NPLALAESL 173
>gi|15644409|ref|NP_229461.1| polypeptide deformylase [Thermotoga
maritima]
gi|3023626|sp|P96113|DEF_THEMA Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|7445091|pir||C72224 polypeptide deformylase - Thermotoga
maritima (strain MSB8)
gi|1772608|emb|CAA71356.1| polypeptide deformylase [Thermotoga
maritima]
gi|4982236|gb|AAD36728.1|AE001808_3 polypeptide deformylase
[Thermotoga maritima]
Length = 164
Score = 65.1 bits (157), Expect = 7e-10
Identities = 56/180 (31%), Positives = 90/180 (49%), Gaps = 32/180 (17%)
Query: 23 GNPTLRKVAEEVT-FPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDIS 81
G+P LRK A+ VT F + K+ I E+M++ + H GVGLAAPQ+ IS
Sbjct: 8 GDPVLRKRAKPVTKFDENLKKTI--ERMIETMYHYD------------GVGLAAPQVGIS 53
Query: 82 KRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY 141
+R + V GN P + NP+++ + EGCLS E+
Sbjct: 54 QRFFVMDV-------GNGPV-------AVINPEILEIDPETEVAE--EGCLSFP-EIFVE 96
Query: 142 VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLL 201
+ R R+ ++Y + GE +L+GY + V QHE DH++G++ DRI+ +++ L+
Sbjct: 97 IERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLM 156
>gi|23467476|ref|ZP_00123057.1| hypothetical protein [Haemophilus
somnus 129PT]
Length = 170
Score = 64.7 bits (156), Expect = 8e-10
Identities = 51/167 (30%), Positives = 89/167 (52%), Gaps = 20/167 (11%)
Query: 38 LSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQG 97
++E + E++ F+ + M E + G+GLAA Q+++ KRII + ++E +
Sbjct: 17 VAEPVSVFDEELQTFIDN-----MFETMYHEEGIGLAATQVNVHKRIITI---DIEGTKE 68
Query: 98 NPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTG 157
N Q V+ NP+++ S + + EGCLS+ + G+V R V ++ ++ G
Sbjct: 69 N--------QIVLINPEIL-ESFGETGIE--EGCLSLP-GLRGFVPRKETVKVKAQNRQG 116
Query: 158 EKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLLILE 204
E L G +I +QHEIDH++GI+F D ++ +KE LL L+
Sbjct: 117 EDFMLDADGLLAICIQHEIDHLNGIVFADHLSPLKRQRMKEKLLKLQ 163
>gi|21233177|ref|NP_639094.1| polypeptide deformylase [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|21115026|gb|AAM43006.1| polypeptide deformylase [Xanthomonas
campestris pv. campestris str. ATCC 33913]
Length = 170
Score = 64.7 bits (156), Expect = 8e-10
Identities = 41/123 (33%), Positives = 64/123 (51%), Gaps = 21/123 (17%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAA Q+D+ KR + + V +DA +V NP++V+ + E
Sbjct: 47 GIGLAASQVDVHKRFMVIDVSEEKDA-----------PQVFINPEIVTRQGEQVY---QE 92
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS VPG V R +T+ Y D+ G+ L G ++ +QHE+DH+DG +F D
Sbjct: 93 GCLS----VPGIFADVSRADAITVRYLDRQGQPQELSTDGLLAVCIQHEMDHLDGKLFVD 148
Query: 187 RIN 189
++
Sbjct: 149 YLS 151
>gi|22990872|ref|ZP_00035659.1| hypothetical protein [Enterococcus
faecium]
Length = 163
Score = 64.7 bits (156), Expect = 9e-10
Identities = 42/124 (33%), Positives = 67/124 (53%), Gaps = 17/124 (13%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+G+AAPQ+ +KRI + V E + + NP+++ + D E
Sbjct: 43 GIGIAAPQVGQNKRIAVIEVDEGEKFE-------------LINPEIIEAKGESL---DVE 86
Query: 130 GCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
GCLS+ V G V R VT+ Y+D+ GE+ + GY + QHEIDH+DGI+F +++
Sbjct: 87 GCLSIP-HVYGTVKRADEVTVRYYDRDGEEIEVTAFGYLARAFQHEIDHLDGILFIEKMI 145
Query: 190 EKNP 193
++ P
Sbjct: 146 QQIP 149
>gi|15964172|ref|NP_384525.1| PROBABLE POLYPEPTIDE DEFORMYLASE
PROTEIN [Sinorhizobium meliloti]
gi|15073348|emb|CAC41856.1| PROBABLE POLYPEPTIDE DEFORMYLASE
PROTEIN [Sinorhizobium meliloti]
Length = 178
Score = 64.7 bits (156), Expect = 9e-10
Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 20/125 (16%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMY-NPKVVSHSVQDAALSDG 128
G+GLAA Q+ + KR++ + V KE Q +++ NPKVV S + +
Sbjct: 48 GIGLAAIQIGVPKRLLVLDV----------TKEGEEKQPLVFINPKVVRSSEERSVYE-- 95
Query: 129 EGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFY 185
EGCLS +P Y V R A +T+EY D+ G++ ++ +G + +QHEIDH++G++F
Sbjct: 96 EGCLS----IPDYYAEVERPAAITVEYVDREGKEQAVEAEGLLATCLQHEIDHLNGVLFI 151
Query: 186 DRINE 190
D I++
Sbjct: 152 DYISK 156
>gi|23396548|sp|Q92SH6|DEF_RHIME Peptide deformylase (PDF)
(Polypeptide deformylase)
Length = 174
Score = 64.7 bits (156), Expect = 9e-10
Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 20/125 (16%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMY-NPKVVSHSVQDAALSDG 128
G+GLAA Q+ + KR++ + V KE Q +++ NPKVV S + +
Sbjct: 44 GIGLAAIQIGVPKRLLVLDV----------TKEGEEKQPLVFINPKVVRSSEERSVYE-- 91
Query: 129 EGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFY 185
EGCLS +P Y V R A +T+EY D+ G++ ++ +G + +QHEIDH++G++F
Sbjct: 92 EGCLS----IPDYYAEVERPAAITVEYVDREGKEQAVEAEGLLATCLQHEIDHLNGVLFI 147
Query: 186 DRINE 190
D I++
Sbjct: 148 DYISK 152
>gi|32491245|ref|NP_871499.1| def [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|30172741|sp|Q8D258|DEF_WIGBR Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|25166452|dbj|BAC24642.1| def [Wigglesworthia brevipalpis]
Length = 152
Score = 64.3 bits (155), Expect = 1e-09
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 28/170 (16%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I+ N LRK+A ++ SE + ++ M E + G+GLAA Q+
Sbjct: 6 ILNYPNKKLRKIASNISLIDSEIKSLIKN-------------MLETMYFNEGIGLAATQV 52
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
D+ KRII + D N K ++ NP ++ A + EGCLS+ ++
Sbjct: 53 DVHKRIIVI------DISKNKNKPL-----ILINPVFINKC---GAQTFEEGCLSIPKKT 98
Query: 139 PGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
+V R +V I+ + GE+ LK KG + +QHE+DH+ G +F D I
Sbjct: 99 -AFVNRSKKVKIKAINCLGEEFLLKSKGLLATCIQHEMDHLIGKLFIDYI 147
>gi|24645728|ref|NP_731495.1| CG31373-PA [Drosophila melanogaster]
gi|23170932|gb|AAN13481.1| CG31373-PA [Drosophila melanogaster]
Length = 196
Score = 64.3 bits (155), Expect = 1e-09
Identities = 55/178 (30%), Positives = 88/178 (48%), Gaps = 30/178 (16%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEI--LGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDI 80
G+P LR+ AEEV + EI + + M++ L+H VG+AAPQ+ I
Sbjct: 13 GDPVLRQRAEEVPPEDIDSREINQIIDGMVKVLRHYD------------CVGVAAPQVGI 60
Query: 81 SKRIIAVLVPNVEDAQGNPPKEAYSLQE-------VMYNP--KVVSHSVQDAALSDGEGC 131
RII + + Q P E Y ++ V NP +++S V EGC
Sbjct: 61 PLRIIVMEFREGKQEQFKP--EIYEERKMSILPLAVFINPELEIISSQVNKHP----EGC 114
Query: 132 LSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+SV R V R+ +V I K G ++L+G+N+ + QHE+DH++G ++ DR++
Sbjct: 115 MSV-RGYSAEVERYDKVRIRGIGKLGTPSEMELEGWNARIAQHEVDHLNGTIYMDRMD 171
>gi|21219403|ref|NP_625182.1| polypeptide deformylase. [Streptomyces
coelicolor A3(2)]
gi|23396576|sp|Q9RD27|DEF1_STRCO Peptide deformylase 1 (PDF 1)
(Polypeptide deformylase 1)
gi|6562865|emb|CAB62674.1| polypeptide deformylase. [Streptomyces
coelicolor A3(2)]
Length = 218
Score = 64.3 bits (155), Expect = 1e-09
Identities = 55/177 (31%), Positives = 81/177 (45%), Gaps = 29/177 (16%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I+ G+P LR+ AE + L E+ ++ L+ + + GVGLAAPQ+
Sbjct: 26 IVAAGDPVLRRAAEPYD---GQVAPALFERFVEALRLT--------MHAAPGVGLAAPQV 74
Query: 79 DISKRIIAVLVP-----NVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLS 133
+ R+ + P V A+G P+ V+ NP AA EGCLS
Sbjct: 75 GVGLRVAVIEDPAPVPDEVRVARGRVPQPF----RVLVNPSYEPAGAGRAAFF--EGCLS 128
Query: 134 VDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDR 187
VPG+ V RHA V + D+ G G+ + +VQHE DH+DG ++ DR
Sbjct: 129 ----VPGWQAVVARHAEVRLRAHDEHGRAVDEVFAGWPARIVQHETDHLDGTLYLDR 181
>gi|15290077|dbj|BAB63770.1| putative peptide deformylase [Oryza
sativa (japonica cultivar-group)]
Length = 284
Score = 63.9 bits (154), Expect = 1e-09
Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 18/136 (13%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GL+APQ+ ++ +++ V P +G + V+ NP V + + L E
Sbjct: 118 GIGLSAPQVGVNVQLM-VFNPAGVKGEGE--------EIVLVNP--VVYKMSKRLLVYEE 166
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS PG VVR V I+ D TG K ++KL G ++ V QHE DH+ GI+F+D
Sbjct: 167 GCLS----FPGIYANVVRPDNVKIDAQDVTGAKIKVKLSGLSARVFQHEFDHLQGILFFD 222
Query: 187 RINEKNPFAVKEGLLI 202
R++ +V+EGL +
Sbjct: 223 RMSLDVLESVREGLKV 238
>gi|11641243|ref|NP_071736.1| peptide deformylase-like protein [Homo
sapiens]
gi|17433054|sp|Q9HBH1|DEFM_HUMAN Peptide deformylase, mitochondrial
precursor (PDF) (Polypeptide deformylase)
gi|11320944|gb|AAG33968.1|AF239156_1 peptide deformylase-like
protein [Homo sapiens]
gi|13195254|gb|AAK15624.1|AF322879_1 polypeptide deformylase-like
protein [Homo sapiens]
Length = 243
Score = 63.5 bits (153), Expect = 2e-09
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 26/182 (14%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
+ + G+P LR VA V E+ ++ G ++ + + + + + R VGL+APQL
Sbjct: 67 VCQVGDPVLRGVAAPV-----ERAQLGGPELQRLTQR-----LVQVMRRRRCVGLSAPQL 116
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQE-----VMYNPKVVSHSVQDAAL-SDGEGCL 132
+ ++++A+ +P + P + A E V NP S V D+ L + EGC
Sbjct: 117 GVPRQVLALELPEALCRECPPRQRALRQMEPFPLRVFVNP---SLRVLDSRLVTFPEGCE 173
Query: 133 SVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
S V G+ V R V I D GE+ + G+ + ++QHE+DH+ G +F D+++
Sbjct: 174 S----VAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 229
Query: 190 EK 191
+
Sbjct: 230 SR 231
>gi|18043802|gb|AAH19912.1|AAH19912 peptide deformylase-like protein
[Homo sapiens]
Length = 243
Score = 63.5 bits (153), Expect = 2e-09
Identities = 51/182 (28%), Positives = 90/182 (49%), Gaps = 26/182 (14%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
+ + G+P LR VA V E+ ++ G ++ + + + + + R VGL+APQL
Sbjct: 67 VCQVGDPVLRGVAAPV-----ERAQLGGPELQRLTQR-----LVQVMRRRRCVGLSAPQL 116
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQE-----VMYNPKVVSHSVQDAAL-SDGEGCL 132
+ ++++A+ +P + P + A E V NP S V D+ L + EGC
Sbjct: 117 GVPRQVLALELPEALCRECPPRQRALRQMEPFPLRVFVNP---SLRVLDSRLVTFPEGCE 173
Query: 133 SVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
S V G+ V R V I D GE+ + G+ + ++QHE+DH+ G +F D+++
Sbjct: 174 S----VAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMD 229
Query: 190 EK 191
+
Sbjct: 230 SR 231
>gi|21244525|ref|NP_644107.1| polypeptide deformylase [Xanthomonas
axonopodis pv. citri str. 306]
gi|21110197|gb|AAM38643.1| polypeptide deformylase [Xanthomonas
axonopodis pv. citri str. 306]
Length = 170
Score = 63.5 bits (153), Expect = 2e-09
Identities = 43/123 (34%), Positives = 66/123 (52%), Gaps = 21/123 (17%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAA Q+D+ KR + + ++ D + P +V NP++VS Q L E
Sbjct: 47 GIGLAASQVDVHKRFMVI---DISDEKNLP--------QVFVNPEIVSK--QGEQLYQ-E 92
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS VPG V R +T+ Y D+ G+ L G ++ +QHE+DH+DG +F D
Sbjct: 93 GCLS----VPGIYADVSRADAITVRYLDRQGQPQELHADGLLAVCIQHEMDHLDGKLFVD 148
Query: 187 RIN 189
++
Sbjct: 149 YLS 151
>gi|22979944|ref|ZP_00025658.1| hypothetical protein [Ralstonia
metallidurans]
Length = 168
Score = 63.2 bits (152), Expect = 2e-09
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 27/172 (15%)
Query: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77
DI+ +P L KVA+ V E++ +++ Q +K MAE + G+GLAA Q
Sbjct: 5 DILTYPDPRLHKVAKPV--------EVVDDRIRQLVKD-----MAETMYEAPGIGLAATQ 51
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137
+D+ +R+I + + D V NP+V S EGCLSV E
Sbjct: 52 VDVHERVIVIDISESRDE-----------LMVFINPEVTWASENRKVWE--EGCLSVP-E 97
Query: 138 VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
V V R RV + D+ GE L ++ +QHEIDH+DG +F + ++
Sbjct: 98 VYDRVERPDRVKVRALDEKGEAFELDADDLLAVCIQHEIDHLDGKVFVEYLS 149
>gi|15676038|ref|NP_273168.1| polypeptide deformylase [Neisseria
meningitidis MC58]
gi|15793191|ref|NP_283013.1| polypeptide deformylase [Neisseria
meningitidis Z2491]
gi|17432950|sp|Q9JQN0|DEF_NEIMA Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|11278651|pir||E81238 formylmethionine deformylase (EC 3.5.1.31)
NMA0164 [imported] - Neisseria meningitidis (strain MC58
serogroup B, strain Z2491 serogroup A)
gi|7225325|gb|AAF40569.1| polypeptide deformylase [Neisseria
meningitidis MC58]
gi|7378935|emb|CAB83478.1| polypeptide deformylase [Neisseria
meningitidis Z2491]
Length = 167
Score = 62.8 bits (151), Expect = 3e-09
Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 21/134 (15%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAA Q+D+ +R++ V ++ + + P V NP +V +D + E
Sbjct: 44 GIGLAATQVDVHERVV---VMDLTEDRSEP--------RVFINPVIVE---KDGETTYEE 89
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS VPG V R RV +E ++ GEK L+ G +I VQHE+DH+ GI+F +
Sbjct: 90 GCLS----VPGIYDTVTRAERVKVEALNEKGEKFTLEADGLLAICVQHELDHLMGIVFVE 145
Query: 187 RINEKNPFAVKEGL 200
R+++ +K L
Sbjct: 146 RLSQLKQGRIKTKL 159
>gi|15835247|ref|NP_297006.1| polypeptide deformylase [Chlamydia
muridarum]
gi|13878461|sp|Q9PK41|DEF_CHLMU Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|11278649|pir||C81680 polypeptide deformylase TC0632 [imported] -
Chlamydia muridarum (strain Nigg)
gi|7190671|gb|AAF39461.1| polypeptide deformylase [Chlamydia
muridarum]
Length = 181
Score = 62.8 bits (151), Expect = 3e-09
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 19/177 (10%)
Query: 16 MNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAA 75
+ D+ +P LRKVA P+ E + L + ++ M+E + GVGLAA
Sbjct: 2 IRDLEYYDSPILRKVAA----PIDEITDELRQLVLD---------MSETMTFYKGVGLAA 48
Query: 76 PQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVD 135
PQ+ S +A+ + VE + +V NP + S Q + EGCLS+
Sbjct: 49 PQVGHS---VALFIMGVEKELDDGELIFCDFPKVFINPVITQKSEQ--LVYGNEGCLSIP 103
Query: 136 REVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
+ G V R ++T+ + G+ + L+G+ + +V HE DH+ G+++ DR+++K+
Sbjct: 104 -GLRGEVARPDKITVTAKNLDGQPFSMTLEGFLARIVMHETDHLHGVLYIDRMSDKD 159
>gi|26991243|ref|NP_746668.1| polypeptide deformylase [Pseudomonas
putida KT2440]
gi|32363154|sp|Q88EA7|DEF2_PSEPK Peptide deformylase 2 (PDF 2)
(Polypeptide deformylase 2)
gi|24986296|gb|AAN70132.1|AE016653_3 polypeptide deformylase
[Pseudomonas putida KT2440]
Length = 178
Score = 62.8 bits (151), Expect = 4e-09
Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 19/186 (10%)
Query: 16 MNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAA 75
+ DI++ G+ L ++A V E +LG +Q L M E + GGVGLAA
Sbjct: 2 IRDILKMGDERLLRIAPPV------PEHMLGSAELQQLIDD----MFETMRHVGGVGLAA 51
Query: 76 PQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDG-EGCLSV 134
PQ+ I +++ + E ++ P EA Q ++ NP + S + + DG EGCLSV
Sbjct: 52 PQVGIDLQLV---IFGFERSERYPDAEAVP-QTILLNPVITPTS---SEVEDGWEGCLSV 104
Query: 135 DREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPF 194
+ G V R + + D G G+++ VVQHE DH+ G ++ RI + F
Sbjct: 105 P-GLRGVVPRFKHICYQGIDPQGSPINRFADGFHARVVQHECDHLIGRLYPSRIQDFAKF 163
Query: 195 AVKEGL 200
E L
Sbjct: 164 GYTEVL 169
>gi|23056001|ref|ZP_00082067.1| hypothetical protein [Geobacter
metallireducens]
Length = 167
Score = 62.4 bits (150), Expect = 4e-09
Identities = 51/171 (29%), Positives = 84/171 (48%), Gaps = 26/171 (15%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I+ NP L+K A V E++ + MAE + GVGLAAPQ+
Sbjct: 5 ILTYPNPILKKKAVPVAVINDATRELVRD-------------MAETMYDAQGVGLAAPQI 51
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
+S+R+I + V E+ P+ + V + + S+ + EGCLSV +
Sbjct: 52 GVSQRVIVIDVSQREER----PELIVCINPVFVHTEGESY--------EEEGCLSVPK-Y 98
Query: 139 PGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
V RHA+V ++ + GE+ + +G +I QHEIDH++G++F D ++
Sbjct: 99 SANVHRHAKVVVKALNLDGEEVTYRAEGLLAIAFQHEIDHLEGMLFVDHLS 149
>gi|15791578|ref|NP_281401.1| polypeptide deformylase [Campylobacter
jejuni]
gi|17432957|sp|Q9PIT8|DEF_CAMJE Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|11278650|pir||F81437 formylmethionine deformylase (EC 3.5.1.31)
Cj0191c [imported] - Campylobacter jejuni (strain NCTC
11168)
gi|6967684|emb|CAB72674.1| polypeptide deformylase [Campylobacter
jejuni subsp. jejuni NCTC 11168]
Length = 175
Score = 62.4 bits (150), Expect = 5e-09
Identities = 45/132 (34%), Positives = 76/132 (57%), Gaps = 15/132 (11%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + GVGLAA Q+DI R++ V N+ D KE L E++ NP+++ +
Sbjct: 34 MYETMIASNGVGLAAIQVDIPLRVLLV---NIFDENDEQKKE--DLLEII-NPEII--PL 85
Query: 121 QDAALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEID 177
+ ++ EGCLS VP + V R+ + ++Y D+ GE L+ KG+ ++ +QHE D
Sbjct: 86 DEEMITCTEGCLS----VPDFFEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHEND 141
Query: 178 HIDGIMFYDRIN 189
H++G +F ++I+
Sbjct: 142 HLNGHLFIEKIS 153
>gi|20146289|dbj|BAB89071.1| peptide deformylase-like protein [Oryza
sativa (japonica cultivar-group)]
gi|20161711|dbj|BAB90628.1| peptide deformylase-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 246
Score = 62.0 bits (149), Expect = 5e-09
Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 34/175 (19%)
Query: 20 IREGNPTLRKVAEEVT---FPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAP 76
++ G+P L + A++V P SEK + + ++M+ ++ + GVGLAAP
Sbjct: 75 VKAGDPVLHEPAQDVAPGDIP-SEKVQGVIDRMVAVMRKAP------------GVGLAAP 121
Query: 77 QLDISKRIIAVLVPNVEDAQGNPPKEAYSLQE-------VMYNPKVVSHSVQDAALSDGE 129
Q+ + +II ++ + ++ PK+ Q+ V+ NPK+ + S + A E
Sbjct: 122 QIGVPLKII--VLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFF--E 177
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDG 181
GCLSVD GY V RH V + D+ G +++ G+ + ++QHE DH++G
Sbjct: 178 GCLSVD----GYRALVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDHLEG 228
>gi|15600920|ref|NP_232550.1| polypeptide deformylase [Vibrio
cholerae]
gi|23396575|sp|Q9KN16|DEF2_VIBCH Peptide deformylase 2 (PDF 2)
(Polypeptide deformylase 2)
gi|11278647|pir||C82494 polypeptide deformylase VCA0150 [imported]
- Vibrio cholerae (strain N16961 serogroup O1)
gi|9657539|gb|AAF96063.1| polypeptide deformylase [Vibrio cholerae]
Length = 168
Score = 62.0 bits (149), Expect = 6e-09
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 35/185 (18%)
Query: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77
+I+ +P LR +++VT S + I D ++ G+GLAAPQ
Sbjct: 5 EILTAPDPRLRVQSKQVTDVASVQTLI-------------DDLLDTLYATDNGIGLAAPQ 51
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137
+ R A++V ++ D + P V+ NPKVVS S ++ EGCLS
Sbjct: 52 VG---REEAIVVIDLSDNRDQP--------LVLINPKVVSGSNKEMG---QEGCLS---- 93
Query: 138 VPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE-KNP 193
VP Y V R+ V +E D+ G+ R++ + +IV+QHEIDH+ G +F D ++ K
Sbjct: 94 VPDYYADVERYTSVVVEALDREGKPLRIETSDFLAIVMQHEIDHLSGNLFIDYLSPLKQQ 153
Query: 194 FAVKE 198
A+K+
Sbjct: 154 MAMKK 158
>gi|24645726|ref|NP_731494.1| CG31278-PA [Drosophila melanogaster]
gi|23170931|gb|AAF54540.2| CG31278-PA [Drosophila melanogaster]
Length = 238
Score = 62.0 bits (149), Expect = 6e-09
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 37/199 (18%)
Query: 11 SHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEI--LGEKMMQFLKHSQDPIMAEKLGLR 68
++L N + G+P LR+ A V EI + E+M++ L+
Sbjct: 43 TNLPPYNHFTQIGDPVLRQQAALVPKEHMASPEIKAIVERMVKVLRKFD----------- 91
Query: 69 GGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSH---------- 118
VG+AAPQ+ +S RIIA+ + +G KE L E +Y + +S
Sbjct: 92 -CVGIAAPQIGVSLRIIAM------EFKGRIRKE---LPEAVYQARQMSELPLTIFINPV 141
Query: 119 -SVQD-AALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEI 176
+V + A L EGC+SV R V R V + D+ G + L L G+N+ + QHE+
Sbjct: 142 LTVTNYAKLKHPEGCMSV-RGYSAEVERFEGVKLTGLDQLGNQSELALSGWNARIAQHEM 200
Query: 177 DHIDGIMFYDRINEKNPFA 195
DH++G ++ D + +++ FA
Sbjct: 201 DHLEGKLYTDHM-DRSTFA 218
>gi|33152876|ref|NP_874229.1| peptide deformylase; formylmethionine
deformylase [Haemophilus ducreyi 35000HP]
gi|33149101|gb|AAP96618.1| peptide deformylase; formylmethionine
deformylase [Haemophilus ducreyi 35000HP]
Length = 171
Score = 61.6 bits (148), Expect = 7e-09
Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 34/166 (20%)
Query: 27 LRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIA 86
L KV E VT + +++ QF+ D + E GG+GLAA Q+ + KR+I
Sbjct: 14 LTKVCEPVT--------QVDDELNQFIDDMFDTMYQE-----GGIGLAASQVGVLKRVIT 60
Query: 87 VLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY---VV 143
+ ++E + N Q V+ NP+++ S + + EGCLS +PGY V
Sbjct: 61 I---DIEGDKTN--------QVVLINPEIL-ESCGETGIE--EGCLS----IPGYRALVP 102
Query: 144 RHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
R ++T++ ++ GE+ +I +QHEIDH++GI+F D I+
Sbjct: 103 RKEKITVKALNRQGEEVIYHADDLFAICIQHEIDHLNGIVFVDHIS 148
>gi|19553932|ref|NP_601934.1| N-formylmethionyl-tRNA deformylase
[Corynebacterium glutamicum ATCC 13032]
gi|21325511|dbj|BAC00133.1| N-formylmethionyl-tRNA deformylase
[Corynebacterium glutamicum ATCC 13032]
Length = 193
Score = 61.6 bits (148), Expect = 8e-09
Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 31/174 (17%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I+ G+P L + VT +SE +E++ + M E + + GVGLAA Q+
Sbjct: 6 IVIHGDPVLHNPTQLVTEDVSELQELIAD-------------MYETMDVANGVGLAANQI 52
Query: 79 DISKRIIAVLVPNVEDAQG-----NPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLS 133
+SKRI P+ E NP E + E M D SD EGCLS
Sbjct: 53 GVSKRIFVYDCPDDEGVMHKGCFINPVLETSEIPETM--------PADDG--SDEEGCLS 102
Query: 134 VDRE-VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
V E P A+VT ++ GE+ ++ +G+ + QHE+ H+DG ++ D
Sbjct: 103 VPGEGFPTGRAHWAKVT--GLNEKGEEVSVEAEGFLARCFQHEVGHLDGFLYTD 154
>gi|23132998|ref|ZP_00114772.1| hypothetical protein [Synechococcus
sp. WH 8102]
Length = 203
Score = 61.2 bits (147), Expect = 9e-09
Identities = 39/125 (31%), Positives = 71/125 (56%), Gaps = 18/125 (14%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAAPQ+ I ++++ + + ++E+A PP V+ NP++ + S E
Sbjct: 73 GIGLAAPQVGIHQQLLVIDL-DLENA-ATPPL-------VLINPEISAASASIDTYE--E 121
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS +PG VVR + + + D+ G ++K G + +QHE+DH++G++F D
Sbjct: 122 GCLS----IPGVYLDVVRPTAIELSFRDEMGRPRKMKADGLMARCIQHEMDHLNGVLFVD 177
Query: 187 RINEK 191
R+ ++
Sbjct: 178 RVTDE 182
>gi|19704492|ref|NP_604054.1| Polypeptide deformylase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|23396540|sp|Q8REF0|DEF_FUSNN Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|19714766|gb|AAL95353.1| Polypeptide deformylase [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 174
Score = 61.2 bits (147), Expect = 1e-08
Identities = 59/174 (33%), Positives = 92/174 (51%), Gaps = 33/174 (18%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I + G L+++A+EV LSE + ++ QFL M E + GVGLAAPQ+
Sbjct: 5 IKKYGEDVLKQIAKEVE--LSE----INDEFRQFLDD-----MVETMYETDGVGLAAPQI 53
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
+SKRI +D G L++V+ NP +V + + EGCLS V
Sbjct: 54 GVSKRIFV-----CDDGNG-------VLRKVI-NPIIVPLTEETQEFE--EGCLS----V 94
Query: 139 PGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
PG V R RV ++Y ++ G++ + + ++VVQHE DH+DGI+F ++I+
Sbjct: 95 PGIYKKVERPKRVLLKYLNEYGKEVEEIAENFLAVVVQHENDHLDGILFIEKIS 148
>gi|29833891|ref|NP_828525.1| putative polypeptide deformylase
[Streptomyces avermitilis MA-4680]
gi|29611016|dbj|BAC75060.1| putative polypeptide deformylase
[Streptomyces avermitilis MA-4680]
Length = 224
Score = 61.2 bits (147), Expect = 1e-08
Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRG--GVGLAAP 76
I+ G+P LR+ AE P + LG ++ + A +L + GVGLAAP
Sbjct: 35 IVAAGDPVLRRGAE----PYDGQ---LGPGLLARF------VEALRLTMHAAPGVGLAAP 81
Query: 77 QLDISKRIIAVLVP-----NVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGC 131
Q+ + RI + P V +G P+ V+ NP + AA EGC
Sbjct: 82 QVGVGLRIAVIEDPAPVPEEVGAVRGRVPQPF----RVLVNPSYEAVGSDRAAFF--EGC 135
Query: 132 LSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDR 187
LS VPG+ V R ARV + D+ G + G+ + +VQHE DH+DG+++ DR
Sbjct: 136 LS----VPGWQAVVARPARVRLTALDEHGRAVDEEFTGWPARIVQHETDHLDGMLYLDR 190
>gi|15640078|ref|NP_229705.1| polypeptide deformylase [Vibrio
cholerae]
gi|17432954|sp|Q9KVU3|DEF1_VIBCH Peptide deformylase 1 (PDF 1)
(Polypeptide deformylase 1)
gi|11278646|pir||A82373 polypeptide deformylase VC0046 [imported] -
Vibrio cholerae (strain N16961 serogroup O1)
gi|9654439|gb|AAF93224.1| polypeptide deformylase [Vibrio cholerae]
Length = 169
Score = 61.2 bits (147), Expect = 1e-08
Identities = 51/176 (28%), Positives = 85/176 (47%), Gaps = 24/176 (13%)
Query: 30 VAEEVTFPLSEKEEILGEKMMQFLKHSQDPI--MAEKLGLRGGVGLAAPQLDISKRIIAV 87
V + +TFP ++ + + + Q Q + M E + G+GLAA Q+DI +RI+ +
Sbjct: 3 VLQVLTFP-DDRLRTVAKPVEQVTPEIQQIVDDMLETMYAEEGIGLAATQVDIHQRIVVI 61
Query: 88 LVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPG---YVVR 144
+ D V+ NP+++ +D EGCLS VPG V R
Sbjct: 62 DISETRDQ-----------PMVLINPEIIEKRGEDGI---EEGCLS----VPGARALVPR 103
Query: 145 HARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGL 200
A VT++ D+ G++++ +I VQHE+DH+ G +F D ++ +KE L
Sbjct: 104 AAEVTVKALDRNGQEYQFDADDLLAICVQHELDHLAGKLFVDYLSPLKRNRIKEKL 159
>gi|29655164|ref|NP_820856.1| polypeptide deformylase, putative
[Coxiella burnetii RSA 493]
gi|29542436|gb|AAO91370.1| polypeptide deformylase, putative
[Coxiella burnetii RSA 493]
Length = 209
Score = 61.2 bits (147), Expect = 1e-08
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 28/190 (14%)
Query: 22 EGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDIS 81
E L KVA EV PL++ + E M F K Q G G A PQ+ +S
Sbjct: 9 ENKAVLYKVASEVEIPLTKTTKEKIEAMRIFYKSFQ-----------GKAGFAVPQVGLS 57
Query: 82 KRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY 141
+RII V + E L + P + D D EGCLSV +V G
Sbjct: 58 ERIILVEQHLFDTTMAEETDEPTILVNPSWRP------ISDKKEWDIEGCLSVPGKV-GV 110
Query: 142 VVRHARVTIE---YFDKTGEKHRLKL---KGYNSIVVQHEIDHIDGIMFYDR----INEK 191
V R+ V + Y T ++K + Y+S++ QHEIDH++G ++ D+ +NEK
Sbjct: 111 VERYVHVELTAWLYHSDTEALSKIKREYHREYSSVLWQHEIDHLEGKIYVDKAKLLLNEK 170
Query: 192 NPFAVKEGLL 201
+ ++ ++ L+
Sbjct: 171 DFYSFRQQLI 180
>gi|23042035|ref|ZP_00073449.1| hypothetical protein [Trichodesmium
erythraeum IMS101]
Length = 187
Score = 60.8 bits (146), Expect = 1e-08
Identities = 51/172 (29%), Positives = 83/172 (47%), Gaps = 31/172 (18%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISK 82
G+ +LR+ A+ V S+ +++ E M + + G+GLAAPQ+++ K
Sbjct: 23 GDRSLRQSAKRVAKVDSDMRKLVRE-------------MLQTMYTADGIGLAAPQVNVQK 69
Query: 83 RIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY- 141
++I + A PP V+ NP + +S D L EGCLS +PG
Sbjct: 70 QVIVIDCEPTNSA--TPPL-------VLINPTIKKYS-NDICLFQ-EGCLS----IPGVY 114
Query: 142 --VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEK 191
V R + + + Y D+ G L+ + S +QHE+DH+ GI+F DR+ K
Sbjct: 115 LDVQRPSEIEVAYKDENGRPQTLQAQELLSRAIQHEMDHLQGILFVDRVENK 166
>gi|33357295|pdb|1LME|A Chain A, Crystal Structure Of Peptide
Deformylase From Thermotoga Maritima
gi|33357296|pdb|1LME|B Chain B, Crystal Structure Of Peptide
Deformylase From Thermotoga Maritima
Length = 176
Score = 60.5 bits (145), Expect = 1e-08
Identities = 55/180 (30%), Positives = 89/180 (48%), Gaps = 32/180 (17%)
Query: 23 GNPTLRKVAEEVT-FPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDIS 81
G+P LRK A+ VT F + K+ I E+M++ + H GVGLAAPQ+ IS
Sbjct: 20 GDPVLRKRAKPVTKFDENLKKTI--ERMIETMYHYD------------GVGLAAPQVGIS 65
Query: 82 KRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY 141
+R + V GN P + NP+++ + EG LS E+
Sbjct: 66 QRFFVMDV-------GNGPV-------AVINPEILEIDPETEVAE--EGXLSFP-EIFVE 108
Query: 142 VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGLL 201
+ R R+ ++Y + GE +L+GY + V QHE DH++G++ DRI+ +++ L+
Sbjct: 109 IERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLM 168
>gi|22965974|ref|ZP_00013572.1| hypothetical protein [Rhodospirillum
rubrum]
Length = 172
Score = 60.5 bits (145), Expect = 2e-08
Identities = 49/129 (37%), Positives = 69/129 (52%), Gaps = 12/129 (9%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + L G+GLAAPQ+ + KR+I VL P ED P + A NP+++ S
Sbjct: 35 MLETMYLAPGIGLAAPQVGVLKRVI-VLDPAREDEAPRPMRLA--------NPEIIWSSE 85
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
EGCLSV + VVR RV + Y D E + G ++++QHEIDH+D
Sbjct: 86 DTKPYE--EGCLSVPEQY-DTVVRPDRVRVRYLDPDNEIREIDADGLLAVILQHEIDHLD 142
Query: 181 GIMFYDRIN 189
GI+F D ++
Sbjct: 143 GILFVDYLS 151
>gi|28868804|ref|NP_791423.1| polypeptide deformylase [Pseudomonas
syringae pv. tomato str. DC3000]
gi|32363152|sp|Q886I1|DEF2_PSESM Peptide deformylase 2 (PDF 2)
(Polypeptide deformylase 2)
gi|28852043|gb|AAO55118.1| polypeptide deformylase [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 179
Score = 60.1 bits (144), Expect = 2e-08
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 23/182 (12%)
Query: 16 MNDIIREGNPTLRKVAEEV---TFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
+ +I++ G+ L ++A V F SE E ++ + M E + GGVG
Sbjct: 2 IRNILKMGDERLLRIAPPVPAEMFGSSELETLIAD-------------MFETMHSVGGVG 48
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCL 132
LAAPQ+ I +++ + E ++ P EA Q ++ NP + + EGCL
Sbjct: 49 LAAPQIGIDLQLV---IFGFERSERYPQAEAVP-QTILLNPLIT--PLHPGVEEGWEGCL 102
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SV + G V R+ + E FD G+ G+++ VVQHE DH+ G ++ RI + +
Sbjct: 103 SVP-GLRGMVDRYQSIRYEGFDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRITDFS 161
Query: 193 PF 194
F
Sbjct: 162 KF 163
>gi|17230571|ref|NP_487119.1| polypeptide deformylase [Nostoc sp.
PCC 7120]
gi|23396564|sp|Q8YSK6|DEF1_ANASP Peptide deformylase 1 (PDF 1)
(Polypeptide deformylase 1)
gi|25303731|pir||AH2190 polypeptide deformylase [imported] - Nostoc
sp. (strain PCC 7120)
gi|17132173|dbj|BAB74778.1| polypeptide deformylase [Nostoc sp. PCC
7120]
Length = 187
Score = 60.1 bits (144), Expect = 2e-08
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 31/170 (18%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISK 82
G+ LR+ A+ +T E +++ + M+Q + S G+GLAAPQ+ I+K
Sbjct: 23 GDRVLRQPAKRITKVDDETRQLIRD-MLQTMYSSD------------GIGLAAPQVGINK 69
Query: 83 RIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY- 141
++I + D NPP ++ NP + V S EGCLS +PG
Sbjct: 70 QLIVIDCE--PDNPANPPL-------ILINPTI--KQVSREICSAQEGCLS----IPGVY 114
Query: 142 --VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
V R V + Y D+ G LK +QHE+DH++G++F DR++
Sbjct: 115 MDVKRPEVVEVAYKDENGRPQTLKATDLLGRCIQHEMDHLNGVVFVDRVD 164
>gi|22985226|ref|ZP_00030350.1| hypothetical protein [Burkholderia
fungorum]
Length = 177
Score = 60.1 bits (144), Expect = 2e-08
Identities = 55/187 (29%), Positives = 92/187 (48%), Gaps = 23/187 (12%)
Query: 16 MNDIIREGNPTLRKVAEEVT-FPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLA 74
+ +I++ G+P L ++A+ V F E E++ + M E + G GLA
Sbjct: 2 IREILKMGDPRLLRIADPVDHFDTPELHELVKD-------------MFETMHDANGAGLA 48
Query: 75 APQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDG-EGCLS 133
APQ+ ++ +++ + E PP + V+ NP + S QD + +G EGCLS
Sbjct: 49 APQIGVNLQVVIFGFGHNERYPDAPPVP----ETVLINPTITPVS-QD--MEEGWEGCLS 101
Query: 134 VDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNP 193
V + G V R + + FD+ G+ +G+++ VVQHE DH+ G ++ RIN+
Sbjct: 102 VP-GLRGAVSRFSMIKYHGFDQYGKPIDRVAEGFHARVVQHECDHLIGKLYPMRINDFAK 160
Query: 194 FAVKEGL 200
F E L
Sbjct: 161 FGFTEVL 167
>gi|23471104|ref|ZP_00126435.1| hypothetical protein [Pseudomonas
syringae pv. syringae B728a]
Length = 179
Score = 59.7 bits (143), Expect = 3e-08
Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 25/183 (13%)
Query: 16 MNDIIREGNPTLRKVAEEV---TFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVG 72
++ I++ G+ L ++A V F SE + ++ + M E + GGVG
Sbjct: 2 IHKILKMGDERLLRIAPPVPAEMFGSSELDTLIAD-------------MFETMHSVGGVG 48
Query: 73 LAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDG-EGC 131
LAAPQ+ I +++ + E + P EA Q ++ NP + S L +G EGC
Sbjct: 49 LAAPQIGIDLQLV---IFGFERNERYPEAEAVP-QTILINPLITPLS---PTLEEGWEGC 101
Query: 132 LSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEK 191
LSV + G V R+ + E FD G+ G+++ VVQHE DH+ G ++ RI +
Sbjct: 102 LSVP-GLRGMVDRYQSIRYEGFDPQGQPIERVAHGFHARVVQHECDHLIGRLYPSRITDF 160
Query: 192 NPF 194
+ F
Sbjct: 161 SKF 163
>gi|27367269|ref|NP_762796.1| N-formylmethionyl-tRNA deformylase
[Vibrio vulnificus CMCP6]
gi|31076649|sp|Q8D5P5|DEF2_VIBVU Peptide deformylase 2 (PDF 2)
(Polypeptide deformylase 2)
gi|27358838|gb|AAO07786.1|AE016811_27 N-formylmethionyl-tRNA
deformylase [Vibrio vulnificus CMCP6]
Length = 168
Score = 59.3 bits (142), Expect = 4e-08
Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 35/185 (18%)
Query: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77
+I+ +P LR ++EVT + + I + +++ L + + GVGLAAPQ
Sbjct: 5 EILTAPDPRLRVQSKEVTDVAAVQTLI--DDLLETLYETDN-----------GVGLAAPQ 51
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137
+ R A++V ++ + + P V+ NPKVVS S ++ EGCLS
Sbjct: 52 VG---REEAIVVIDLSENRDEP--------LVLVNPKVVSGSNKEMG---QEGCLS---- 93
Query: 138 VPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE-KNP 193
VP Y V R+ V +E D+ G+ R++ + +IV+QHEIDH+ G +F D ++ K
Sbjct: 94 VPDYYADVERYTSVVVEALDRDGKPLRIETSEFLAIVMQHEIDHLSGNLFIDYLSPLKQQ 153
Query: 194 FAVKE 198
A+K+
Sbjct: 154 MAMKK 158
>gi|23009516|ref|ZP_00050535.1| hypothetical protein
[Magnetospirillum magnetotacticum]
Length = 171
Score = 59.3 bits (142), Expect = 4e-08
Identities = 42/121 (34%), Positives = 63/121 (51%), Gaps = 12/121 (9%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
GVGLAA Q+ + KR++ + E A+ NP V NP++V S + E
Sbjct: 44 GVGLAAIQIGVPKRVVTIDTSKDETAK-NP--------TVYLNPEIVWASEEKRVYD--E 92
Query: 130 GCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
GCLS+ E G V R RV + Y GE + G + +QHEIDH++G++F D ++
Sbjct: 93 GCLSIP-EFYGEVERPDRVRVRYMTLDGETVEREADGLLATCLQHEIDHLNGVLFIDHLS 151
Query: 190 E 190
+
Sbjct: 152 K 152
>gi|22299219|ref|NP_682466.1| polypeptide deformylase
[Thermosynechococcus elongatus BP-1]
gi|22295401|dbj|BAC09228.1| polypeptide deformylase
[Thermosynechococcus elongatus BP-1]
Length = 188
Score = 58.9 bits (141), Expect = 5e-08
Identities = 53/172 (30%), Positives = 85/172 (48%), Gaps = 31/172 (18%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISK 82
G+ LR+ A+ V+ + + + KM+Q + +S D G+GLAAPQ+ I+K
Sbjct: 23 GDRVLRQPAKRVS-KVDDSIRDIARKMLQTM-YSAD-----------GIGLAAPQVGINK 69
Query: 83 RIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY- 141
+I+ + + + +D + P VM NP + S + EGCLS +PG
Sbjct: 70 QILVIDI-HPDDPEAEP--------LVMINPVIKDFSEELEVCQ--EGCLS----IPGVY 114
Query: 142 --VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEK 191
V R A V + Y D+ G + G + +QHEIDH+ G+MF DR+ +
Sbjct: 115 LEVRRPAMVEVSYKDEWGRPQVIMAGGLLARAIQHEIDHLTGVMFVDRVENQ 166
>gi|15807421|ref|NP_296154.1| polypeptide deformylase [Deinococcus
radiodurans]
gi|23396556|sp|Q9RRQ4|DEF_DEIRA Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|7473347|pir||H75274 polypeptide deformylase - Deinococcus
radiodurans (strain R1)
gi|6460249|gb|AAF11975.1|AE002073_5 polypeptide deformylase
[Deinococcus radiodurans]
Length = 232
Score = 58.9 bits (141), Expect = 5e-08
Identities = 56/172 (32%), Positives = 88/172 (50%), Gaps = 13/172 (7%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISK 82
G+P LR+ A +T ++ + G + Q ++ D M E + GVGLAAPQ+ +
Sbjct: 28 GDPILRRKARNLT--AADTLHVPGFE-PQTVREVAD-TMLETMFEERGVGLAAPQIGLPV 83
Query: 83 RIIAVLVPNVEDAQGN----PPKEAYSLQE-VMYNPKV-VSHSVQDAALSDGEGCLSVDR 136
R+ V V +D + N P + L+E VM NP V V + +D + EGCLS+
Sbjct: 84 RMF-VAVEYADDEEENEGQETPLRSRVLREYVMLNPVVKVINKKKDKSYQ--EGCLSIPG 140
Query: 137 EVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
V R +V ++Y D G+ ++ + Y + V QHE DH+DG +F D +
Sbjct: 141 IYEDGVPRARQVRVDYTDLDGQPRSIEAEDYLARVFQHETDHLDGKLFLDHL 192
>gi|15895739|ref|NP_349088.1| N-formylmethionyl-tRNA deformylase
[Clostridium acetobutylicum]
gi|23396569|sp|Q97G95|DEF2_CLOAB Peptide deformylase 2 (PDF 2)
(Polypeptide deformylase 2)
gi|25303713|pir||A97205 N-formylmethionyl-tRNA deformylase
[imported] - Clostridium acetobutylicum
gi|15025493|gb|AAK80428.1|AE007746_15 N-formylmethionyl-tRNA
deformylase [Clostridium acetobutylicum]
Length = 150
Score = 58.5 bits (140), Expect = 6e-08
Identities = 49/164 (29%), Positives = 80/164 (47%), Gaps = 22/164 (13%)
Query: 27 LRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIA 86
+R +E+ S E++ +K+ Q L D + + G +AAPQ+ I K++
Sbjct: 6 IRLSEDEILRKKSRPVEVVDDKIRQILDDMLDTLQNTE----NGAAIAAPQVGILKQL-- 59
Query: 87 VLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHA 146
V++ ED + NPK+V + + EGCLS+ V G + R
Sbjct: 60 VVIATGEDIIK------------LVNPKIVKKEGEQEVV---EGCLSIP-NVYGKLKRPK 103
Query: 147 RVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE 190
+VT+E ++ GEK L +G+ + HEIDH+DGI+F D + E
Sbjct: 104 KVTVEALNENGEKITLTGEGFLAKCFCHEIDHLDGILFTDLVTE 147
>gi|18310726|ref|NP_562660.1| polypeptide deformylase [Clostridium
perfringens]
gi|23396559|sp|Q8XJL2|DEF1_CLOPE Peptide deformylase 1 (PDF 1)
(Polypeptide deformylase 1)
gi|18145407|dbj|BAB81450.1| polypeptide deformylase [Clostridium
perfringens str. 13]
Length = 147
Score = 58.5 bits (140), Expect = 6e-08
Identities = 43/127 (33%), Positives = 66/127 (51%), Gaps = 18/127 (14%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + GVGLA+PQ+ I KRI V + D G+ V NP+++ S
Sbjct: 35 MIETMYENNGVGLASPQVGILKRIFVV---DAMDGAGS---------RVFINPEILEKSG 82
Query: 121 QDAALSDGEGCLSV-DREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHI 179
+ +D EGCLS+ R P V R ++ I+ D G + L +G+ + +QHE DH+
Sbjct: 83 EQ---TDEEGCLSLPGRHKP--VKRANKIKIKALDVNGNEFVLDAEGFLARAIQHEYDHL 137
Query: 180 DGIMFYD 186
+G++F D
Sbjct: 138 EGVLFID 144
>gi|28899816|ref|NP_799421.1| polypeptide deformylase [Vibrio
parahaemolyticus RIMD 2210633]
gi|31076643|sp|Q87KD5|DEF1_VIBPA Peptide deformylase 1 (PDF 1)
(Polypeptide deformylase 1)
gi|28808068|dbj|BAC61305.1| polypeptide deformylase [Vibrio
parahaemolyticus]
Length = 172
Score = 58.5 bits (140), Expect = 7e-08
Identities = 43/132 (32%), Positives = 66/132 (49%), Gaps = 21/132 (15%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + G+GLAA Q+DI KRI+ + + D V+ NP+++
Sbjct: 35 MIETMYDEEGIGLAATQVDIHKRIVVIDISETRDE-----------PMVLINPEILEKRG 83
Query: 121 QDAALSDGEGCLSVDREVPG---YVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEID 177
+D EGCLS VPG V R A VT++ D+ G++ + +I VQHE+D
Sbjct: 84 EDGI---EEGCLS----VPGARALVPRAAEVTVKALDRDGKEFTFEADDLLAICVQHELD 136
Query: 178 HIDGIMFYDRIN 189
H+ G +F D ++
Sbjct: 137 HLQGKLFVDYLS 148
>gi|15594411|ref|NP_212199.1| polypeptide deformylase (def)
[Borrelia burgdorferi]
gi|6014950|sp|O51092|DEF_BORBU Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|7445084|pir||A70108 polypeptide deformylase (def) homolog - Lyme
disease spirochete
gi|2687938|gb|AAC66445.1| polypeptide deformylase (def) [Borrelia
burgdorferi B31]
Length = 172
Score = 58.2 bits (139), Expect = 7e-08
Identities = 40/134 (29%), Positives = 68/134 (49%), Gaps = 21/134 (15%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + + GGVGLAAPQ+ + + V E+ P V NP ++ S
Sbjct: 39 MIELMDISGGVGLAAPQVGLDLALFVVR----ENKMARP--------LVFINPSIIETSY 86
Query: 121 QDAALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEID 177
+ ++ EGCLS +PG ++R V I + D+ G+ ++ + + ++QHE+D
Sbjct: 87 EFSSYK--EGCLS----IPGVYYDLMRPKAVVINFHDENGKSFTIENSDFLARIIQHEMD 140
Query: 178 HIDGIMFYDRINEK 191
H++G++F D EK
Sbjct: 141 HLNGVLFIDYYEEK 154
>gi|23335362|ref|ZP_00120599.1| hypothetical protein
[Bifidobacterium longum DJO10A]
gi|23465752|ref|NP_696355.1| polypeptide deformylase
[Bifidobacterium longum NCC2705]
gi|23326438|gb|AAN24991.1|AE014743_2 polypeptide deformylase
[Bifidobacterium longum NCC2705]
Length = 217
Score = 58.2 bits (139), Expect = 8e-08
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 21/187 (11%)
Query: 4 IDKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAE 63
+++L+K + I++ G P LR+ LS ++ + L + M E
Sbjct: 16 VEQLIKTGGKEKLLPIVQAGEPVLRQRTVAYNGQLS-------KRTLAKLIDTMHTTMLE 68
Query: 64 KLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDA 123
GVGLAA Q+ + +AV+ +V D + +P + A V+ NP S D
Sbjct: 69 A----PGVGLAATQIGLG-LALAVVEDHVRDDEDDPREIAEFPFHVIINPSYKPTS--DK 121
Query: 124 ALSDGEGCLSVDREVPGYVVRHAR---VTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
S EGCLS D GY R +T E+ D+ G+ H L G+ + + QHE DH+
Sbjct: 122 TASFYEGCLSFD----GYQAVRKRWLDITAEWDDEDGKHHSEPLHGWPARIFQHETDHLS 177
Query: 181 GIMFYDR 187
G ++ DR
Sbjct: 178 GELYIDR 184
>gi|22994874|ref|ZP_00039362.1| hypothetical protein [Xylella
fastidiosa Dixon]
Length = 170
Score = 58.2 bits (139), Expect = 8e-08
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 21/132 (15%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + G+GLAA Q+++ +R + V V + N P V NP++V+
Sbjct: 38 MFETMYAAPGIGLAATQVNVHQRFMVVDVSE----EKNAPM-------VFINPEIVTRE- 85
Query: 121 QDAALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEID 177
D EGCLS VPG V R + + + D+ G++ +L +G ++ +QHE+D
Sbjct: 86 GDQVFQ--EGCLS----VPGIHADVTRALSIVVRFLDRHGDEQQLTAEGLLAVCIQHEMD 139
Query: 178 HIDGIMFYDRIN 189
H+DG +F D ++
Sbjct: 140 HLDGKLFIDYLS 151
>gi|3023625|sp|P94601|DEF_FREDI Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|1772503|emb|CAA71353.1| polypeptide deformylase [Tolypothrix sp.
PCC 7601]
Length = 187
Score = 58.2 bits (139), Expect = 9e-08
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAV-LVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHS 119
M + + + G+GLAAPQ+ I K++I + L P D NPP V+ NP +
Sbjct: 48 MLQTMYSKDGIGLAAPQVGIHKQLIVIDLEP---DNPANPPL-------VLINPTI--KQ 95
Query: 120 VQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHI 179
V EGCLS+ V V R V I Y D+ G LK + +QHE+DH+
Sbjct: 96 VSKEICVAQEGCLSIP-NVYMDVKRPEVVEIAYKDENGRPKTLKATDLLARCIQHEMDHL 154
Query: 180 DGIMFYDRIN 189
+G++F DR++
Sbjct: 155 NGVVFVDRVD 164
>gi|27887934|gb|EAA25001.1| Polypeptide deformylase [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
Length = 174
Score = 57.8 bits (138), Expect = 1e-07
Identities = 58/166 (34%), Positives = 86/166 (50%), Gaps = 25/166 (15%)
Query: 27 LRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIA 86
++K E+V +++K E L E +F K D M E + GVGLAAPQ+ +SKRI
Sbjct: 5 IKKYGEDVLKQIAKKVE-LNEINDEFRKFLDD--MVETMYETDGVGLAAPQIGVSKRIFV 61
Query: 87 VLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY---VV 143
+D G K + NP VV + + EGCLS VPG V
Sbjct: 62 -----CDDGNGVVRK--------VINPIVVPLTEETQEFE--EGCLS----VPGIYKKVE 102
Query: 144 RHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
R RV ++Y ++ GE+ + + ++VVQHE DH+DGI+F ++I+
Sbjct: 103 RPKRVLLKYLNENGEEIEEIAENFLAVVVQHENDHLDGILFIEKIS 148
>gi|15837528|ref|NP_298216.1| polypeptide deformylase [Xylella
fastidiosa 9a5c]
gi|28199634|ref|NP_779948.1| polypeptide deformylase [Xylella
fastidiosa Temecula1]
gi|17432956|sp|Q9PEV2|DEF_XYLFA Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|11278648|pir||H82746 polypeptide deformylase XF0926 [imported] -
Xylella fastidiosa (strain 9a5c)
gi|9105847|gb|AAF83736.1|AE003931_13 polypeptide deformylase
[Xylella fastidiosa 9a5c]
gi|28057749|gb|AAO29597.1| polypeptide deformylase [Xylella
fastidiosa Temecula1]
Length = 170
Score = 57.8 bits (138), Expect = 1e-07
Identities = 39/132 (29%), Positives = 68/132 (50%), Gaps = 21/132 (15%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + G+GLAA Q+++ +R + + V E ++ V NP++V+
Sbjct: 38 MFETMYAAPGIGLAATQVNVHQRFMVIDV-----------SEEKNVPMVFINPEIVTRE- 85
Query: 121 QDAALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEID 177
D EGCLS VPG V R + + + D+ G++ +L +G ++ +QHE+D
Sbjct: 86 GDQVFQ--EGCLS----VPGIHADVTRALSIVVRFLDRHGDEQQLTAEGLLAVCIQHEMD 139
Query: 178 HIDGIMFYDRIN 189
H+DG +F D ++
Sbjct: 140 HLDGKLFIDYLS 151
>gi|27364480|ref|NP_760008.1| N-formylmethionyl-tRNA deformylase
[Vibrio vulnificus CMCP6]
gi|31076651|sp|Q8DDE3|DEF1_VIBVU Peptide deformylase 1 (PDF 1)
(Polypeptide deformylase 1)
gi|27360599|gb|AAO09535.1|AE016800_140 N-formylmethionyl-tRNA
deformylase [Vibrio vulnificus CMCP6]
Length = 170
Score = 57.8 bits (138), Expect = 1e-07
Identities = 42/132 (31%), Positives = 70/132 (52%), Gaps = 21/132 (15%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + G+GLAA Q+DI +RI+ + ++ +++ P V+ NP+++
Sbjct: 35 MIETMYDEEGIGLAATQVDIHQRIVVI---DISESRNEP--------MVLINPEILEKRG 83
Query: 121 QDAALSDGEGCLSVDREVPG---YVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEID 177
+D EGCLS VPG V R A VT++ D+ G + L+ +I +QHE+D
Sbjct: 84 EDGI---EEGCLS----VPGARALVPRAAEVTVKALDRDGHEFTLEADDLLAICIQHELD 136
Query: 178 HIDGIMFYDRIN 189
H+ G +F D ++
Sbjct: 137 HLQGKLFVDYLS 148
>gi|22996949|ref|ZP_00041190.1| hypothetical protein [Xylella
fastidiosa Ann-1]
Length = 170
Score = 57.8 bits (138), Expect = 1e-07
Identities = 38/132 (28%), Positives = 69/132 (51%), Gaps = 21/132 (15%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + G+GLAA Q+++ +R + + V E ++ V NP++V+
Sbjct: 38 MFETMYAAPGIGLAATQVNVHQRFMVIDV-----------SEEKNVPMVFINPEIVT--- 83
Query: 121 QDAALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEID 177
++ EGCLS VPG V R + + + D+ G++ +L +G ++ +QHE+D
Sbjct: 84 KEGDQVFQEGCLS----VPGIHADVTRALSIVVRFLDRHGDEQQLTAEGLLAVCIQHEMD 139
Query: 178 HIDGIMFYDRIN 189
H+DG +F D ++
Sbjct: 140 HLDGKLFIDYLS 151
>gi|23058834|ref|ZP_00083857.1| hypothetical protein [Pseudomonas
fluorescens PfO-1]
Length = 179
Score = 57.4 bits (137), Expect = 1e-07
Identities = 53/186 (28%), Positives = 91/186 (48%), Gaps = 23/186 (12%)
Query: 16 MNDIIREGNPTLRKVAEEVTFPLSEKEEI--LGEKMMQFLKHSQDPIMAEKLGLRGGVGL 73
+ +I++ G+ L ++A V + + E+ L + M Q ++ GGVGL
Sbjct: 2 IREILKMGDERLLRIAPPVPAEMLDSPELWQLIDDMFQTMESV------------GGVGL 49
Query: 74 AAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDG-EGCL 132
AAPQ+ + +++ + E ++ P EA Q ++ NP + S + +G EGCL
Sbjct: 50 AAPQIGVDLQLV---IFGFEHSERYPDAEAVP-QTILINPLITPLS---PLMEEGFEGCL 102
Query: 133 SVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
SV + G V R+ ++ E D GE G+++ VVQHE DH+ G ++ RI + +
Sbjct: 103 SVP-GLRGAVDRYQQIRYEGVDPKGEPIVRVASGFHARVVQHECDHLIGRLYPSRITDFS 161
Query: 193 PFAVKE 198
F E
Sbjct: 162 KFGFTE 167
>gi|17988608|ref|NP_541241.1| POLYPEPTIDE DEFORMYLASE [Brucella
melitensis]
gi|23500757|ref|NP_700197.1| polypeptide deformylase [Brucella suis
1330]
gi|25303728|pir||AF3542 formylmethionine deformylase (EC 3.5.1.31)
[imported] - Brucella melitensis (strain 16M)
gi|17984410|gb|AAL53505.1| POLYPEPTIDE DEFORMYLASE [Brucella
melitensis 16M]
gi|23464412|gb|AAN34202.1|AE014596_7 polypeptide deformylase
[Brucella suis 1330]
Length = 187
Score = 57.4 bits (137), Expect = 1e-07
Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 18/124 (14%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAA Q+ R++ ++ A+ PK + + NP +V S D + E
Sbjct: 56 GIGLAAIQVGEPIRMLV-----IDLAKEGEPKAPH----IFVNPTIVQSS--DKRSTYEE 104
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS +P Y V R A V + YFD G+ ++ G + +QHEIDH++G++F D
Sbjct: 105 GCLS----IPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHLNGVLFID 160
Query: 187 RINE 190
I++
Sbjct: 161 HISK 164
>gi|23396543|sp|Q8YDB4|DEF_BRUME Peptide deformylase (PDF)
(Polypeptide deformylase)
Length = 175
Score = 57.4 bits (137), Expect = 1e-07
Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 18/124 (14%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAA Q+ R++ ++ A+ PK + + NP +V S D + E
Sbjct: 44 GIGLAAIQVGEPIRMLV-----IDLAKEGEPKAPH----IFVNPTIVQSS--DKRSTYEE 92
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS +P Y V R A V + YFD G+ ++ G + +QHEIDH++G++F D
Sbjct: 93 GCLS----IPDYYAEVERPATVKVNYFDADGKPQSMEADGLMATCLQHEIDHLNGVLFID 148
Query: 187 RINE 190
I++
Sbjct: 149 HISK 152
>gi|23473190|ref|ZP_00128486.1| hypothetical protein [Desulfovibrio
desulfuricans G20]
Length = 179
Score = 57.4 bits (137), Expect = 1e-07
Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 13/129 (10%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
MAE + G+GLAAPQ+ + R+I V D G +E NP++ +
Sbjct: 44 MAETMYDADGIGLAAPQVGATCRLIVV------DVSGPEAREDL---RTYINPRL---EL 91
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
+ + EGCLSV + V R +V + D G + G SI +QHEIDH+D
Sbjct: 92 LEGKVDTEEGCLSVP-ALRSKVTRTEKVRLHATDLDGNAVCIDADGLLSICLQHEIDHLD 150
Query: 181 GIMFYDRIN 189
G +F D+I+
Sbjct: 151 GTLFIDKIS 159
>gi|22975929|ref|ZP_00021852.1| hypothetical protein [Ralstonia
metallidurans]
Length = 177
Score = 57.4 bits (137), Expect = 1e-07
Identities = 52/187 (27%), Positives = 87/187 (45%), Gaps = 27/187 (14%)
Query: 16 MNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAA 75
+ DI++ G+ L + A VT + + +L + M ++H+ G GLAA
Sbjct: 2 IRDILKMGDARLLQQARPVTQFNTPELRLLIDDMFDTMEHAN------------GAGLAA 49
Query: 76 PQLDISKRIIAVLV---PNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDG-EGC 131
PQ+ + +++ P DA P + V+ NP + S + + DG EGC
Sbjct: 50 PQIGVDLQVVIFGFDRNPRYPDAPTVP-------KTVLINPSLEPLSDE---MDDGWEGC 99
Query: 132 LSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEK 191
LSV + G V R+ R+ FD G + + +++ VVQHE DH+ G+++ RI +
Sbjct: 100 LSVP-GLRGVVPRYTRLKYTGFDMMGNRIERVAEDFHARVVQHECDHLIGVLYPMRIKDF 158
Query: 192 NPFAVKE 198
F E
Sbjct: 159 TRFGFTE 165
>gi|15606030|ref|NP_213407.1| polypeptide deformylase [Aquifex
aeolicus]
gi|6014949|sp|O66847|DEF_AQUAE Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|7445085|pir||C70352 polypeptide deformylase - Aquifex aeolicus
gi|2983203|gb|AAC06802.1| polypeptide deformylase [Aquifex aeolicus
VF5]
Length = 169
Score = 57.4 bits (137), Expect = 1e-07
Identities = 51/176 (28%), Positives = 86/176 (47%), Gaps = 31/176 (17%)
Query: 16 MNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAA 75
+ DI+ N L+K E+V +++ +++ ++ D + + GVGLAA
Sbjct: 2 VRDIVIYPNEILKKPTEKV--------DVIDKEVKNLIRDMFDTMYEAE-----GVGLAA 48
Query: 76 PQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVD 135
Q+ + ++ + EDA PP L+ V+ NP++ + + EGCLS
Sbjct: 49 NQIGVPLSVMVIDTSPKEDA---PP-----LKLVLINPEIKE---GEGKIKYKEGCLS-- 95
Query: 136 REVPGYVV---RHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
PG V R +V + ++ GE L L+G+ +IV QHE+DH+ GI F DR+
Sbjct: 96 --FPGLSVEVERFQKVKVNALNEHGEPVELTLEGFPAIVFQHELDHLKGITFVDRL 149
>gi|18310615|ref|NP_562549.1| polypeptide deformylase [Clostridium
perfringens]
gi|23396560|sp|Q8XJX0|DEF2_CLOPE Peptide deformylase 2 (PDF 2)
(Polypeptide deformylase 2)
gi|18145296|dbj|BAB81339.1| polypeptide deformylase [Clostridium
perfringens str. 13]
Length = 155
Score = 57.0 bits (136), Expect = 2e-07
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 29/172 (16%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I++ G+ L+KV+E P+ + E+ G ++Q LK + L G+GLAAPQ+
Sbjct: 6 IVQIGHEALKKVSE----PVKDVNEVKG--LIQDLK--------DTLATVEGIGLAAPQI 51
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
++KR++ + N D + + V+ NP+V V D EGCLS
Sbjct: 52 AVNKRVVYI---NFGDGEN---------EYVLINPEVT--GVSKETYEDYEGCLSYVMH- 96
Query: 139 PGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE 190
G V R V I+ ++ GE + + + HEIDH++GIM+ DR E
Sbjct: 97 EGLVERPRAVRIQALNEKGELKVYEAQDLLARCFLHEIDHLEGIMYVDRAKE 148
>gi|15887717|ref|NP_353398.1| AGR_C_640p [Agrobacterium tumefaciens]
gi|17934282|ref|NP_531072.1| polypeptide deformylase [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gi|23396541|sp|Q8UID1|DEF_AGRT5 Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|25303724|pir||F97403 polypeptide deformylase (AF213822)
[imported] - Agrobacterium tumefaciens (strain C58,
Cereon)
gi|25303727|pir||AF2621 polypeptide deformylase def [imported] -
Agrobacterium tumefaciens (strain C58, Dupont)
gi|15155278|gb|AAK86183.1| AGR_C_640p [Agrobacterium tumefaciens
str. C58 (Cereon)]
gi|17738706|gb|AAL41388.1| polypeptide deformylase [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 170
Score = 57.0 bits (136), Expect = 2e-07
Identities = 44/155 (28%), Positives = 82/155 (52%), Gaps = 20/155 (12%)
Query: 38 LSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQG 97
L ++ +++ + + L+ + D M E + G+GLAA Q+ + +R++ + V E +
Sbjct: 14 LRQQSKLIEQVDAEVLRLADD--MLETMYDAPGIGLAAIQIGVPRRMLVIDVAR-EGEEK 70
Query: 98 NPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY---VVRHARVTIEYFD 154
P V NP+++ V D + EGCLS +P Y V R A +T++Y
Sbjct: 71 TPV--------VFINPEIL--KVSDDISTYEEGCLS----IPDYYAEVERPASLTVQYVG 116
Query: 155 KTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+ G++ ++ G + +QHEIDH++G++F D I+
Sbjct: 117 RDGKQQTVEADGLLATCLQHEIDHLNGVLFIDHIS 151
>gi|22958319|ref|ZP_00005993.1| hypothetical protein [Rhodobacter
sphaeroides]
Length = 177
Score = 56.6 bits (135), Expect = 2e-07
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAAPQ+ + +R+I + D P M NP+VV S +D + + E
Sbjct: 43 GIGLAAPQVGVVRRLIVLDCNKESDGARRPV--------AMVNPEVVWRS-EDVSTYE-E 92
Query: 130 GCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS+ V V R A V + + G + + G + VQHEIDH+DG +F D
Sbjct: 93 GCLSLP-NVFADVERPAEVKVRWTGLDGREEEEQFAGLWATCVQHEIDHLDGKLFID 148
>gi|22958320|ref|ZP_00005994.1| hypothetical protein [Rhodobacter
sphaeroides]
Length = 260
Score = 56.6 bits (135), Expect = 3e-07
Identities = 44/135 (32%), Positives = 68/135 (49%), Gaps = 15/135 (11%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G GLAAPQ+ R++ + V + KEA + +V NP+++ + +A + E
Sbjct: 140 GRGLAAPQVG---RMVRLFVMDTL------WKEAPAAPQVFVNPQIL--WMAEARVEGPE 188
Query: 130 GCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
GCLS+ P V R + + + G + L G +I QHEIDH+DGI+ DR+
Sbjct: 189 GCLSIPGARP-LVARAPEIRLRWTSLFGAEQEAHLTGIEAICAQHEIDHLDGIVTLDRL- 246
Query: 190 EKNPFAVKEGLLILE 204
+P A E L +E
Sbjct: 247 --SPAARDEALREME 259
>gi|24114564|ref|NP_709074.1| peptide deformylase [Shigella flexneri
2a str. 301]
gi|30064608|ref|NP_838779.1| peptide deformylase [Shigella flexneri
2a str. 2457T]
gi|24053759|gb|AAN44781.1|AE015342_8 peptide deformylase [Shigella
flexneri 2a str. 301]
gi|30042867|gb|AAP18590.1| peptide deformylase [Shigella flexneri
2a str. 2457T]
Length = 169
Score = 56.2 bits (134), Expect = 3e-07
Identities = 50/163 (30%), Positives = 79/163 (47%), Gaps = 28/163 (17%)
Query: 27 LRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIA 86
LRKVA+ V +E + I+ + M E + G+GLAA Q+DI +RII
Sbjct: 14 LRKVAKPVEEVNAEIQRIVDD-------------MFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 87 VLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHA 146
+ V D + V+ NP+++ S + EGCLS+ E V R
Sbjct: 61 IDVSENRDE-----------RLVLINPELLEKSGETGI---EEGCLSIP-EQRALVPRAE 105
Query: 147 RVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+V I D+ G+ L+ +G +I +QHE+DH+ G +F D ++
Sbjct: 106 KVKIRALDRDGKPFELEAEGLLAICIQHEMDHLVGKLFMDYLS 148
>gi|2098360|pdb|1DEF| Peptide Deformylase Catalytic Core (Residues
1 - 147), Nmr, 9 Structures
Length = 147
Score = 56.2 bits (134), Expect = 3e-07
Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 28/163 (17%)
Query: 27 LRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIA 86
LRKVA+ V +E + I+ + M E + G+GLAA Q+DI +RII
Sbjct: 13 LRKVAKPVEEVNAEIQRIVDD-------------MFETMYAEEGIGLAATQVDIHQRIIV 59
Query: 87 VLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHA 146
+ V D + V+ NP+++ S + EGCLS+ E V R
Sbjct: 60 IDVSENRDE-----------RLVLINPELLEKSGETGI---EEGCLSIP-EQRALVPRAE 104
Query: 147 RVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+V I D+ G+ L+ G +I +QHE+DH+ G +F D ++
Sbjct: 105 KVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLS 147
>gi|2981897|pdb|2DEF| Peptide Deformylase Catalytic Core (Residues
1 - 147), Nmr, 20 Structures
Length = 147
Score = 56.2 bits (134), Expect = 3e-07
Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 28/163 (17%)
Query: 27 LRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIA 86
LRKVA+ V +E + I+ + M E + G+GLAA Q+DI +RII
Sbjct: 13 LRKVAKPVEEVNAEIQRIVDD-------------MFETMYAEEGIGLAATQVDIHQRIIV 59
Query: 87 VLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHA 146
+ V D + V+ NP+++ S + EGCLS+ E V R
Sbjct: 60 IDVSENRDE-----------RLVLINPELLEKSGETGI---EEGCLSIP-EQRALVPRAE 104
Query: 147 RVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+V I D+ G+ L+ G +I +QHE+DH+ G +F D ++
Sbjct: 105 KVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLS 147
>gi|16762876|ref|NP_458493.1| polypeptide deformylase [Salmonella
enterica subsp. enterica serovar Typhi]
gi|29144363|ref|NP_807705.1| polypeptide deformylase [Salmonella
enterica subsp. enterica serovar Typhi Ty2]
gi|23396544|sp|Q8Z1W9|DEF_SALTI Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|25303718|pir||AB1010 formylmethionine deformylase (EC 3.5.1.31)
- Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16505183|emb|CAD09179.1| polypeptide deformylase [Salmonella
enterica subsp. enterica serovar Typhi]
gi|29140001|gb|AAO71565.1| polypeptide deformylase [Salmonella
enterica subsp. enterica serovar Typhi Ty2]
Length = 169
Score = 56.2 bits (134), Expect = 3e-07
Identities = 50/163 (30%), Positives = 77/163 (46%), Gaps = 28/163 (17%)
Query: 27 LRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIA 86
LRKVA+ V +E + I+ + M E + G+GLAA Q+DI +RII
Sbjct: 14 LRKVAKPVEEVNAEIQRIVDD-------------MFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 87 VLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHA 146
+ V D + V+ NP+++ S + EGCLS+ E V R
Sbjct: 61 IDVSENRDE-----------RLVLINPELLEKSGETGI---EEGCLSIP-EQRALVPRAE 105
Query: 147 RVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+V I D+ G L+ G +I +QHE+DH+ G +F D ++
Sbjct: 106 KVKIRALDRNGNPFELEADGLLAICIQHEMDHLVGKLFIDYLS 148
>gi|17433052|sp|Q9FV54|DEFC_LYCES Peptide deformylase, chloroplast
precursor (PDF) (Polypeptide deformylase)
gi|11320950|gb|AAG33972.1| peptide deformylase-like protein
[Lycopersicon esculentum]
Length = 279
Score = 55.8 bits (133), Expect = 4e-07
Identities = 39/135 (28%), Positives = 71/135 (51%), Gaps = 12/135 (8%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GL+APQ+ ++ + ++V N +G + V+ NP+V +S + + E
Sbjct: 127 GIGLSAPQVGMN---VQLMVFNAAGERGE------GEEIVLVNPRVSRYSRR--IIPYEE 175
Query: 130 GCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
GCLS + G V R V ++ D G + + L + V QHE DH+ G++F+D++
Sbjct: 176 GCLSFPM-IHGDVKRPESVKVDAQDINGTRFEISLSALPARVFQHEFDHLQGVLFFDKMT 234
Query: 190 EKNPFAVKEGLLILE 204
++ ++E L+ LE
Sbjct: 235 DEVLDTIREKLVALE 249
>gi|33239533|ref|NP_874475.1| N-formylmethionyl-tRNA deformylase
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
gi|33237058|gb|AAP99127.1| N-formylmethionyl-tRNA deformylase
[Prochlorococcus marinus subsp. marinus str. CCMP1375]
Length = 203
Score = 55.8 bits (133), Expect = 4e-07
Identities = 39/126 (30%), Positives = 70/126 (54%), Gaps = 19/126 (15%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAAPQ+ S++ + V+ ++E++ PP ++ NP++ S E
Sbjct: 71 GIGLAAPQIG-SQQQLLVIDLDIENS-ATPPI-------ILINPEITEFSATIDTYE--E 119
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS +PG V+R + + + + D+ G ++ G + +QHE+DH++G++F D
Sbjct: 120 GCLS----IPGVYLDVIRPSSIKVNFRDEMGRPKKINADGLLARCIQHEMDHLNGVLFVD 175
Query: 187 R-INEK 191
R INE+
Sbjct: 176 RAINEE 181
>gi|4699740|pdb|1ICJ|A Chain A, Pdf Protein Is Crystallized As Ni2+
Containing Form, Cocrystallized With Inhibitor
Polyethylene Glycol (Peg)
gi|4699741|pdb|1ICJ|B Chain B, Pdf Protein Is Crystallized As Ni2+
Containing Form, Cocrystallized With Inhibitor
Polyethylene Glycol (Peg)
gi|4699742|pdb|1ICJ|C Chain C, Pdf Protein Is Crystallized As Ni2+
Containing Form, Cocrystallized With Inhibitor
Polyethylene Glycol (Peg)
gi|5821888|pdb|1BS4|A Chain A, Peptide Deformylase As Zn2+
Containing Form (Native) In Complex With Inhibitor
Polyethylene Glycol
gi|5821889|pdb|1BS4|B Chain B, Peptide Deformylase As Zn2+
Containing Form (Native) In Complex With Inhibitor
Polyethylene Glycol
gi|5821890|pdb|1BS4|C Chain C, Peptide Deformylase As Zn2+
Containing Form (Native) In Complex With Inhibitor
Polyethylene Glycol
gi|5821891|pdb|1BS5|A Chain A, Peptide Deformylase As Zn2+
Containing Form
gi|5821892|pdb|1BS5|B Chain B, Peptide Deformylase As Zn2+
Containing Form
gi|5821893|pdb|1BS5|C Chain C, Peptide Deformylase As Zn2+
Containing Form
gi|5821894|pdb|1BS6|A Chain A, Peptide Deformylase As Ni2+
Containing Form In Complex With Tripeptide Met-Ala-Ser
gi|5821895|pdb|1BS6|B Chain B, Peptide Deformylase As Ni2+
Containing Form In Complex With Tripeptide Met-Ala-Ser
gi|5821896|pdb|1BS6|C Chain C, Peptide Deformylase As Ni2+
Containing Form In Complex With Tripeptide Met-Ala-Ser
gi|5821900|pdb|1BS7|A Chain A, Peptide Deformylase As Ni2+
Containing Form
gi|5821901|pdb|1BS7|B Chain B, Peptide Deformylase As Ni2+
Containing Form
gi|5821902|pdb|1BS7|C Chain C, Peptide Deformylase As Ni2+
Containing Form
gi|5821903|pdb|1BS8|A Chain A, Peptide Deformylase As Zn2+
Containing Form In Complex With Tripeptide Met-Ala-Ser
gi|5821904|pdb|1BS8|B Chain B, Peptide Deformylase As Zn2+
Containing Form In Complex With Tripeptide Met-Ala-Ser
gi|5821905|pdb|1BS8|C Chain C, Peptide Deformylase As Zn2+
Containing Form In Complex With Tripeptide Met-Ala-Ser
gi|5821915|pdb|1BSZ|A Chain A, Peptide Deformylase As Fe2+
Containing Form (Native) In Complex With Inhibitor
Polyethylene Glycol
gi|5821916|pdb|1BSZ|B Chain B, Peptide Deformylase As Fe2+
Containing Form (Native) In Complex With Inhibitor
Polyethylene Glycol
gi|5821917|pdb|1BSZ|C Chain C, Peptide Deformylase As Fe2+
Containing Form (Native) In Complex With Inhibitor
Polyethylene Glycol
gi|7767088|pdb|1BSJ|A Chain A, Cobalt Deformylase Inhibitor Complex
From E.Coli
gi|7767089|pdb|1BSK|A Chain A, Zinc Deformylase Inhibitor Complex
From E.Coli
gi|16975207|pdb|1G27|A Chain A, Crystal Structure Of E.Coli
Polypeptide Deformylase Complexed With The Inhibitor
Bb-3497
gi|16975208|pdb|1G27|B Chain B, Crystal Structure Of E.Coli
Polypeptide Deformylase Complexed With The Inhibitor
Bb-3497
gi|16975209|pdb|1G27|C Chain C, Crystal Structure Of E.Coli
Polypeptide Deformylase Complexed With The Inhibitor
Bb-3497
gi|16975210|pdb|1G2A|A Chain A, The Crystal Structure Of E.Coli
Peptide Deformylase Complexed With Actinonin
gi|16975211|pdb|1G2A|B Chain B, The Crystal Structure Of E.Coli
Peptide Deformylase Complexed With Actinonin
gi|16975212|pdb|1G2A|C Chain C, The Crystal Structure Of E.Coli
Peptide Deformylase Complexed With Actinonin
gi|22219291|pdb|1LRU|A Chain A, Crystal Structure Of E.Coli Peptide
Deformylase Complexed With Antibiotic Actinonin
gi|22219292|pdb|1LRU|B Chain B, Crystal Structure Of E.Coli Peptide
Deformylase Complexed With Antibiotic Actinonin
gi|22219293|pdb|1LRU|C Chain C, Crystal Structure Of E.Coli Peptide
Deformylase Complexed With Antibiotic Actinonin
Length = 168
Score = 55.8 bits (133), Expect = 4e-07
Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 28/163 (17%)
Query: 27 LRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIA 86
LRKVA+ V +E + I+ + M E + G+GLAA Q+DI +RII
Sbjct: 13 LRKVAKPVEEVNAEIQRIVDD-------------MFETMYAEEGIGLAATQVDIHQRIIV 59
Query: 87 VLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHA 146
+ V D + V+ NP+++ S + EGCLS+ E V R
Sbjct: 60 IDVSENRDE-----------RLVLINPELLEKSGETGI---EEGCLSIP-EQRALVPRAE 104
Query: 147 RVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+V I D+ G+ L+ G +I +QHE+DH+ G +F D ++
Sbjct: 105 KVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLS 147
>gi|15803814|ref|NP_289848.1| peptide deformylase [Escherichia coli
O157:H7 EDL933]
gi|15833406|ref|NP_312179.1| peptide deformylase [Escherichia coli
O157:H7]
gi|16131166|ref|NP_417745.1| peptide deformylase [Escherichia coli
K12]
gi|26249871|ref|NP_755911.1| Peptide deformylase [Escherichia coli
CFT073]
gi|120450|sp|P27251|DEF_ECOLI Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|95874|pir||S23107 N-formylmethionylaminoacyl-tRNA deformylase
(EC 3.5.1.27) - Escherichia coli (strain K-12)
gi|25303707|pir||H91147 peptide deformylase [imported] -
Escherichia coli (strain O157:H7, substrain RIMD
0509952)
gi|25303712|pir||D85993 peptide deformylase [imported] -
Escherichia coli (strain O157:H7, substrain EDL933)
gi|41474|emb|CAA45206.1| fms [Escherichia coli]
gi|443989|emb|CAA54367.1| N-formylmethionylaminoacyl-tRNA
deformylase; peptide deformylase [Escherichia coli]
gi|471304|emb|CAA54826.1| deformylase [Escherichia coli]
gi|606221|gb|AAA58084.1| N-formylmethionylaminoacyl-tRNA
deformylase [Escherichia coli]
gi|1789682|gb|AAC76312.1| peptide deformylase [Escherichia coli
K12]
gi|12517916|gb|AAG58408.1|AE005556_1 peptide deformylase
[Escherichia coli O157:H7 EDL933]
gi|13363625|dbj|BAB37575.1| peptide deformylase [Escherichia coli
O157:H7]
gi|26110299|gb|AAN82485.1|AE016767_245 Peptide deformylase
[Escherichia coli CFT073]
Length = 169
Score = 55.8 bits (133), Expect = 4e-07
Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 28/163 (17%)
Query: 27 LRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIA 86
LRKVA+ V +E + I+ + M E + G+GLAA Q+DI +RII
Sbjct: 14 LRKVAKPVEEVNAEIQRIVDD-------------MFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 87 VLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHA 146
+ V D + V+ NP+++ S + EGCLS+ E V R
Sbjct: 61 IDVSENRDE-----------RLVLINPELLEKSGETGI---EEGCLSIP-EQRALVPRAE 105
Query: 147 RVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+V I D+ G+ L+ G +I +QHE+DH+ G +F D ++
Sbjct: 106 KVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLS 148
>gi|3660174|pdb|1DFF| Peptide Deformylase
Length = 164
Score = 55.8 bits (133), Expect = 4e-07
Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 28/163 (17%)
Query: 27 LRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIA 86
LRKVA+ V +E + I+ + M E + G+GLAA Q+DI +RII
Sbjct: 13 LRKVAKPVEEVNAEIQRIVDD-------------MFETMYAEEGIGLAATQVDIHQRIIV 59
Query: 87 VLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHA 146
+ V D + V+ NP+++ S + EGCLS+ E V R
Sbjct: 60 IDVSENRDE-----------RLVLINPELLEKSGETGI---EEGCLSIP-EQRALVPRAE 104
Query: 147 RVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+V I D+ G+ L+ G +I +QHE+DH+ G +F D ++
Sbjct: 105 KVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLS 147
>gi|15892003|ref|NP_359717.1| polypeptide deformylase [EC:3.5.1.31]
[Rickettsia conorii]
gi|25507968|pir||H97709 formylmethionine deformylase (EC 3.5.1.31)
- Rickettsia conorii (strain Malish 7)
gi|15619118|gb|AAL02618.1| polypeptide deformylase [EC:3.5.1.31]
[Rickettsia conorii]
Length = 224
Score = 55.5 bits (132), Expect = 5e-07
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 15/176 (8%)
Query: 26 TLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRII 85
T+R A+ + FPLS ++ L + + K+ Q+ A GLAAPQ+ ISK II
Sbjct: 49 TIRIKAKTLNFPLSSED--LRDISILEKKYDQEENCA---------GLAAPQIGISKCII 97
Query: 86 AVLV-PNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVR 144
V + E + +P + + + NP + D EGC SV+ G V R
Sbjct: 98 IFAVHEDAELKKWHPDLKDTMPKTIWINPSYKPIGIDKH--EDYEGCFSVENAT-GPVAR 154
Query: 145 HARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGL 200
++ +D G + + +G+ + V+QHEIDH++G +F D + K +E L
Sbjct: 155 FKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAPKKIMTKEEYL 210
>gi|16766695|ref|NP_462310.1| peptide deformylase [Salmonella
typhimurium LT2]
gi|23396546|sp|Q8ZLM7|DEF_SALTY Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|16421962|gb|AAL22269.1| peptide deformylase [Salmonella
typhimurium LT2]
Length = 169
Score = 55.5 bits (132), Expect = 5e-07
Identities = 50/163 (30%), Positives = 77/163 (46%), Gaps = 28/163 (17%)
Query: 27 LRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIA 86
LRKVA+ V +E + I+ + M E + G+GLAA Q+DI +RII
Sbjct: 14 LRKVAKPVEEVNAEIQRIVDD-------------MFETMYAEEGIGLAATQVDIHQRIIV 60
Query: 87 VLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHA 146
+ V D + V+ NP+++ S + EGCLS+ E V R
Sbjct: 61 IDVSENRDE-----------RLVLINPELLEKSGETGI---EEGCLSIP-EQRALVPRAE 105
Query: 147 RVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+V I D+ G L+ G +I +QHE+DH+ G +F D ++
Sbjct: 106 KVKIRALDRDGNPFELEADGLLAICIQHEMDHLVGKLFIDYLS 148
>gi|28262346|gb|EAA25850.1| polypeptide deformylase [Rickettsia
sibirica]
Length = 224
Score = 55.5 bits (132), Expect = 5e-07
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 15/176 (8%)
Query: 26 TLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRII 85
T+R A+ + FPLS ++ L + + K+ Q+ A GLAAPQ+ ISK II
Sbjct: 49 TIRIKAKTLNFPLSSED--LRDISILEKKYDQEDNCA---------GLAAPQIGISKCII 97
Query: 86 AVLV-PNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVR 144
V + E + +P + + + NP + D EGC SV+ G V R
Sbjct: 98 IFAVHEDAELKKWHPDLKDTMPKTIWINPSYKPIGIDKH--EDYEGCFSVENAT-GPVAR 154
Query: 145 HARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGL 200
++ +D G + + +G+ + V+QHEIDH++G +F D + K +E L
Sbjct: 155 FKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAPKKIMTKEEYL 210
>gi|17546118|ref|NP_519520.1| PUTATIVE POLYPEPTIDE DEFORMYLASE
PROTEIN [Ralstonia solanacearum]
gi|23396561|sp|Q8XZJ6|DEF2_RALSO Peptide deformylase 2 (PDF 2)
(Polypeptide deformylase 2)
gi|17428414|emb|CAD15101.1| PUTATIVE POLYPEPTIDE DEFORMYLASE
PROTEIN [Ralstonia solanacearum]
Length = 177
Score = 55.5 bits (132), Expect = 5e-07
Identities = 40/138 (28%), Positives = 65/138 (46%), Gaps = 7/138 (5%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M + + G GLAAPQ+ + +++ D P + V+ NP + +
Sbjct: 35 MFDTMDAARGAGLAAPQIGVDLQVVIFGF----DRNDRYPDAPAVPKTVLINPTI--EPL 88
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
DA EGCLSV + G V R+ R+ +D+ G +G+++ VVQHE DH+
Sbjct: 89 SDAMEDGWEGCLSVP-GLRGVVPRYTRLRYTGYDQHGHAIDRIAEGFHARVVQHECDHLQ 147
Query: 181 GIMFYDRINEKNPFAVKE 198
GI++ R+ + F E
Sbjct: 148 GILYPMRVQDFTRFGFTE 165
>gi|30249715|ref|NP_841785.1| Formylmethionine deformylase
[Nitrosomonas europaea ATCC 19718]
gi|30180752|emb|CAD85666.1| Formylmethionine deformylase
[Nitrosomonas europaea ATCC 19718]
Length = 176
Score = 55.5 bits (132), Expect = 5e-07
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 21/183 (11%)
Query: 19 IIREGNPTLRKVAEEV-TFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77
+++ G+P L + A V F E E +L QD M + + G GLAAPQ
Sbjct: 5 VLKMGDPCLLQPARRVDQFGTPELEALL-----------QD--MQDTMAALNGAGLAAPQ 51
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137
+ +S + V++ VE + P E+ V+ NP V + + D EGCLS+
Sbjct: 52 IGVS---LQVVIFGVEHSPRYPDAESVPFT-VLINP--VLTPLTEQMEEDWEGCLSIP-G 104
Query: 138 VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVK 197
+ G V R+ R+ + D G + G+++ VVQHE DH++GI++ RIN+ F
Sbjct: 105 MRGLVPRYTRLRYQGVDAAGASIDRTVTGFHARVVQHECDHLNGILYPMRINDLRKFGYT 164
Query: 198 EGL 200
+ L
Sbjct: 165 DTL 167
>gi|33519686|ref|NP_878518.1| polypeptide deformylase [Candidatus
Blochmannia floridanus]
gi|33517349|emb|CAD83734.1| polypeptide deformylase [Candidatus
Blochmannia floridanus]
Length = 175
Score = 55.5 bits (132), Expect = 6e-07
Identities = 45/171 (26%), Positives = 79/171 (45%), Gaps = 30/171 (17%)
Query: 27 LRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIA 86
LRK+A V+ + ++I+ + M E + + G+GLAA Q+DI ++II
Sbjct: 14 LRKIARSVSIISHDTKKIISD-------------MFETMYFQQGIGLAATQVDIHQKIIV 60
Query: 87 VLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHA 146
+ D N K V NP ++ + EGCLS+ + + V R
Sbjct: 61 I------DLNNNIQKRL-----VFINPCIIKKIGTITHII--EGCLSIPK-IRASVPRSQ 106
Query: 147 RVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVK 197
+ ++ D+ G ++ S+ +QHEIDH+ G +F D + +PF ++
Sbjct: 107 NIIVQSLDENGNNFEMEATDLLSVCIQHEIDHLLGKLFIDYL---SPFKIQ 154
>gi|21223589|ref|NP_629368.1| putative polypeptide deformylase
[Streptomyces coelicolor A3(2)]
gi|23396574|sp|Q9K4A0|DEF4_STRCO Peptide deformylase 4 (PDF 4)
(Polypeptide deformylase 4)
gi|8546887|emb|CAB94606.1| putative polypeptide deformylase
[Streptomyces coelicolor A3(2)]
Length = 216
Score = 55.5 bits (132), Expect = 6e-07
Identities = 51/171 (29%), Positives = 80/171 (45%), Gaps = 26/171 (15%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISK 82
GNP L K E+VT GE+ Q + D +++ GVGLAA Q+ +SK
Sbjct: 48 GNPVLHKECEDVT--------DFGEEFQQLVA---DMFASQRTA--EGVGLAANQIGVSK 94
Query: 83 RIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDG-EGCLSVDRE-VPG 140
++ P+ E V+ NP++V L D EGCLSV P
Sbjct: 95 KVFVYDCPD---------DEGVRHVGVVCNPRLVELPADRRRLDDSNEGCLSVPTAYAPL 145
Query: 141 YVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEK 191
+A VT + D+ G +++ GY + +QHE DH+ G ++ DR++++
Sbjct: 146 ARPDYAEVTGQ--DEKGNPVKVRGTGYFARCLQHETDHLYGYLYIDRLSKR 194
>gi|17544789|ref|NP_518191.1| PROBABLE POLYPEPTIDE DEFORMYLASE
PROTEIN [Ralstonia solanacearum]
gi|23396562|sp|Q8Y3B0|DEF1_RALSO Peptide deformylase 1 (PDF 1)
(Polypeptide deformylase 1)
gi|17427078|emb|CAD13598.1| PROBABLE POLYPEPTIDE DEFORMYLASE
PROTEIN [Ralstonia solanacearum]
Length = 169
Score = 55.5 bits (132), Expect = 6e-07
Identities = 48/172 (27%), Positives = 85/172 (48%), Gaps = 27/172 (15%)
Query: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77
+I++ +P L KVA+ V ++ +++ + + MAE + G+GLAA Q
Sbjct: 5 NILQYPDPRLHKVAKPVA--------VVDDRIRKLVAD-----MAETMYDAPGIGLAATQ 51
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137
+D+ +R+I + V D V NP++V S +A EGCLSV +
Sbjct: 52 VDVHERVITIDVSESRDE-----------LRVFINPEIVWAS--EARKVWDEGCLSVP-D 97
Query: 138 VPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+ V R RV + ++ GE L+ G ++ +QHE+DH+ G +F + ++
Sbjct: 98 IYDKVERPDRVRVRALNEKGESFELETDGLLAVCIQHEMDHLMGKVFVEYLS 149
>gi|28572612|ref|NP_789392.1| peptide deformylase [Tropheryma
whipplei TW08/27]
gi|28410744|emb|CAD67130.1| peptide deformylase [Tropheryma
whipplei TW08/27]
Length = 201
Score = 55.1 bits (131), Expect = 6e-07
Identities = 39/148 (26%), Positives = 68/148 (45%), Gaps = 29/148 (19%)
Query: 70 GVGLAAPQLDISKRII-------------AVLVPNVEDAQGNPPKEAYSLQEVMYNPKVV 116
GVGLA PQ+ + RI + P++ +G P ++ + Q
Sbjct: 49 GVGLAGPQIGLGLRIFVYSYTEGDTLHQGVAINPDLLIPKGVPKRQTHKQQ--------- 99
Query: 117 SHSVQDAALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQ 173
+++ D EGCLS PGY + R +VT+ FD+ + + G+ + + Q
Sbjct: 100 ANNSTSCDEPDREGCLS----FPGYQFPLERAPQVTLSAFDENKKPFTVHATGWLARIFQ 155
Query: 174 HEIDHIDGIMFYDRINEKNPFAVKEGLL 201
HE DH+ G ++ DR+ +K V++ +L
Sbjct: 156 HEFDHLQGTLYVDRLAQKYSGEVRQAVL 183
>gi|23396567|sp|Q92JI7|DEF2_RICCN Peptide deformylase 2 (PDF 2)
(Polypeptide deformylase 2)
Length = 202
Score = 54.7 bits (130), Expect = 9e-07
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 15/176 (8%)
Query: 26 TLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRII 85
T+R A+ + FPLS ++ L + + K+ Q+ A GLAAPQ+ ISK II
Sbjct: 27 TIRIKAKTLNFPLSSED--LRDISILEKKYDQEENCA---------GLAAPQIGISKCII 75
Query: 86 AVLV-PNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVR 144
V + E + +P + + + NP + D EGC SV+ G V R
Sbjct: 76 IFAVHEDAELKKWHPDLKDTMPKTIWINPSYKPIGIDKH--EDYEGCFSVENAT-GPVAR 132
Query: 145 HARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKNPFAVKEGL 200
++ +D G + + +G+ + V+QHEIDH++G +F D + K +E L
Sbjct: 133 FKKIHYHAYDINGNQIQGIAEGFLARVIQHEIDHLNGKVFLDYVAPKKIMTKEEYL 188
>gi|15894999|ref|NP_348348.1| N-formylmethionyl-tRNA deformylase
[Clostridium acetobutylicum]
gi|3023622|sp|O05100|DEF1_CLOAB Peptide deformylase 1 (PDF 1)
(Polypeptide deformylase 1)
gi|25303714|pir||E97112 N-formylmethionyl-tRNA deformylase
[imported] - Clostridium acetobutylicum
gi|1905954|gb|AAB50347.1| deformylase
gi|15024688|gb|AAK79688.1|AE007681_9 N-formylmethionyl-tRNA
deformylase [Clostridium acetobutylicum]
Length = 150
Score = 54.7 bits (130), Expect = 9e-07
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 23/165 (13%)
Query: 26 TLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRII 85
++RK +E+ S K E + ++++ + M E + GVGLAAPQ+ I KR++
Sbjct: 5 SIRKYGDELLRKKSRKVEKIDKRLLTLIDD-----MFETMYNADGVGLAAPQVGILKRLV 59
Query: 86 AVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRH 145
+ V G P V+ NP+++ S D EGCLS+ E G V R
Sbjct: 60 VIDV-------GEGPV-------VLINPEILETS---GKAVDVEGCLSIP-ERQGEVERP 101
Query: 146 ARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE 190
V + ++ GE+ ++ + + + HE DH++G++F D++ E
Sbjct: 102 TYVKAKALNEKGEEIVIEAEDLFARAICHETDHLNGVLFVDKLAE 146
>gi|31195299|ref|XP_306597.1| ENSANGP00000001350 [Anopheles gambiae]
gi|21290045|gb|EAA02190.1| ENSANGP00000001350 [Anopheles gambiae
str. PEST]
Length = 165
Score = 54.7 bits (130), Expect = 1e-06
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 34/175 (19%)
Query: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77
D++R + LR VA V E + I+ + M E + G+GLAA Q
Sbjct: 5 DVLRFPDERLRTVAAPVETFTPELQHIVDD-------------MFETMYAEEGIGLAATQ 51
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137
+DI +RII + +V + + +P V+ NP+++ Q + EGCLS
Sbjct: 52 VDIHQRIIVI---DVSENREDP--------LVLINPEIIE---QAGSTGIEEGCLS---- 93
Query: 138 VPG---YVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
VPG V R V + D+ G+ L+ +I +QHE+DH+ G +F D ++
Sbjct: 94 VPGSRALVPRAEWVKVRALDRHGKAFELEADDLLAICIQHEMDHLVGKLFVDYLS 148
>gi|28493277|ref|NP_787438.1| formylmethionine deformylase
[Tropheryma whipplei str. Twist]
gi|28476318|gb|AAO44407.1| formylmethionine deformylase [Tropheryma
whipplei str. Twist]
Length = 228
Score = 54.3 bits (129), Expect = 1e-06
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 21/144 (14%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSH---SVQDAALS 126
GVGLA PQ+ + RI +G+ + ++ + PK V + Q A S
Sbjct: 76 GVGLAGPQIGLGLRIFV-----YSYTEGDTLHQGVAINPDLLIPKGVPKRQTNKQQANNS 130
Query: 127 ------DGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEID 177
D EGCLS PGY + R +VT+ FD+ + + G+ + + QHE D
Sbjct: 131 TSCDEPDREGCLS----FPGYQFPLERAPQVTLSAFDENKKPFTVHATGWLARIFQHEFD 186
Query: 178 HIDGIMFYDRINEKNPFAVKEGLL 201
H+ G ++ DR+ +K V++ +L
Sbjct: 187 HLQGTLYVDRLAQKYSGEVRQAVL 210
>gi|15604081|ref|NP_220596.1| METHIONYL-TRNA DEFORMYLASE (def)
[Rickettsia prowazekii]
gi|6225256|sp|Q9ZDV8|DEF_RICPR Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|7445088|pir||B71732 methionyl-tRNA deformylase (def) RP208 -
Rickettsia prowazekii
gi|3860772|emb|CAA14673.1| METHIONYL-TRNA DEFORMYLASE (def)
[Rickettsia prowazekii]
Length = 175
Score = 53.9 bits (128), Expect = 1e-06
Identities = 45/152 (29%), Positives = 76/152 (49%), Gaps = 9/152 (5%)
Query: 38 LSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQG 97
L +K + + E Q K D M E + G GLAA Q+ I RI+ + + + +
Sbjct: 14 LKQKSKPVLECTDQTRKFMHD--MLETMYNADGAGLAAVQVGILLRILVIDIKEYDPVE- 70
Query: 98 NPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTG 157
PK+ Y L + NP+++ S + ++ EGC+S+ ++ V R V I Y D G
Sbjct: 71 -RPKDFYPL--FIVNPEIIEKSTE--LVTANEGCISLPKQRI-EVTRPESVKIRYLDYHG 124
Query: 158 EKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+ LK + + V+QHE DH++G + D ++
Sbjct: 125 KSQELKANDWLARVIQHEYDHLEGKLMVDYLS 156
>gi|20807950|ref|NP_623121.1| N-formylmethionyl-tRNA deformylase
[Thermoanaerobacter tengcongensis]
gi|23396539|sp|Q8R9T0|DEF_THETN Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|20516520|gb|AAM24725.1| N-formylmethionyl-tRNA deformylase
[Thermoanaerobacter tengcongensis]
Length = 159
Score = 53.9 bits (128), Expect = 2e-06
Identities = 51/166 (30%), Positives = 80/166 (47%), Gaps = 31/166 (18%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISK 82
G+P LRK A+ VT S IL + MAE + L GVGLAA Q+ I +
Sbjct: 10 GDPVLRKKAKPVTEINSHIITILED-------------MAETMYLNDGVGLAANQVGILR 56
Query: 83 RIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYV 142
R++ + V L E++ NP++V ++ EGCLS+ V G V
Sbjct: 57 RLVVIDV-------------GEGLLELI-NPEIV---YEEGEQIGPEGCLSIP-GVFGEV 98
Query: 143 VRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
R +V + Y D+ G + + + + HEIDH++G++F D++
Sbjct: 99 KRPQKVKVRYLDREGNVKEIVGEDLLARALCHEIDHLEGVLFVDKV 144
>gi|6685122|gb|AAF23793.1|AF213822_8 polypeptide deformylase
[Zymomonas mobilis]
Length = 177
Score = 53.9 bits (128), Expect = 2e-06
Identities = 40/142 (28%), Positives = 74/142 (51%), Gaps = 13/142 (9%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + G+GLAA Q+ ++KR++ + + E+ EA V NP++
Sbjct: 35 MFETMYKAPGIGLAAIQVGVAKRLLVIDLQQPEEG-----GEAKRNPMVFINPELTPEGE 89
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
+ + EGCLSV + V R + + ++ D+ G H +++G + +QHE+DH++
Sbjct: 90 EKRLYN--EGCLSVPDQY-AEVRRPSVINAKWQDRDGNFHEERIEGLLATCLQHEMDHLE 146
Query: 181 GIMFYDRINEKNPFAVKEGLLI 202
GI+F D ++ +K G+L+
Sbjct: 147 GILFIDHLSR-----LKRGMLM 163
>gi|30249917|ref|NP_841987.1| Formylmethionine deformylase
[Nitrosomonas europaea ATCC 19718]
gi|30180954|emb|CAD85881.1| Formylmethionine deformylase
[Nitrosomonas europaea ATCC 19718]
Length = 185
Score = 53.5 bits (127), Expect = 2e-06
Identities = 48/175 (27%), Positives = 77/175 (43%), Gaps = 34/175 (19%)
Query: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77
+I+R + L K+A EV E ++ MAE + G+GLAA Q
Sbjct: 22 NILRYPDERLHKIATEVPSITREIRTLVSN-------------MAETMYAAPGIGLAATQ 68
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137
+D+ +RII + V D V+ NP++++ S EGCLS
Sbjct: 69 VDVHQRIIVIDVSETRDE-----------LLVLINPEIIASS---GNAETQEGCLS---- 110
Query: 138 VPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
VPG V R VT+ G+ + G ++ +QHE+DH+ G +F + ++
Sbjct: 111 VPGIFDKVTRAEEVTVRATGIDGKSFEMDASGLLAVCIQHEMDHLMGKVFVEYLS 165
>gi|28867417|ref|NP_790036.1| polypeptide deformylase [Pseudomonas
syringae pv. tomato str. DC3000]
gi|32363153|sp|Q88B43|DEF1_PSESM Peptide deformylase 1 (PDF 1)
(Polypeptide deformylase 1)
gi|28850651|gb|AAO53731.1| polypeptide deformylase [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 168
Score = 53.5 bits (127), Expect = 2e-06
Identities = 40/134 (29%), Positives = 68/134 (49%), Gaps = 20/134 (14%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAA Q+++ KR++ + + E S V NP++ + D E
Sbjct: 44 GIGLAATQVNVHKRVVVMDL-----------SEDRSAPMVFINPEI--EKLTDEMDQYQE 90
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS VPG+ V R +V ++ D+ G+ + L +G +I +QHE DH++G +F D
Sbjct: 91 GCLS----VPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVD 146
Query: 187 RINEKNPFAVKEGL 200
++ +K+ L
Sbjct: 147 YLSNLKRDRIKKKL 160
>gi|16120580|ref|NP_403893.1| polypeptide deformylase [Yersinia
pestis]
gi|22127893|ref|NP_671316.1| peptide deformylase [Yersinia pestis
KIM]
gi|23396545|sp|Q8ZJ79|DEF_YERPE Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|25303719|pir||AC0030 formylmethionine deformylase (EC 3.5.1.31)
[imported] - Yersinia pestis (strain CO92)
gi|15978342|emb|CAC89102.1| polypeptide deformylase [Yersinia
pestis CO92]
gi|21961030|gb|AAM87567.1|AE014004_5 peptide deformylase [Yersinia
pestis KIM]
Length = 170
Score = 53.5 bits (127), Expect = 2e-06
Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + G+GLAA Q+D+ ++II + + D + V+ NP+++ S
Sbjct: 35 MFETMYAEEGIGLAATQVDVHQQIIVIDISENRDQ-----------RLVLINPELLEKSG 83
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHID 180
+ EGCLS+ E V R +V I D+ G+ L+ G +I +QHE+DH+
Sbjct: 84 ETGI---EEGCLSIP-EQRALVPRAEKVKIRALDRDGKPFELETDGLLAICIQHEMDHLI 139
Query: 181 GIMFYDRIN 189
G +F D ++
Sbjct: 140 GKLFVDYLS 148
>gi|27383220|ref|NP_774749.1| polypeptide deformylase
[Bradyrhizobium japonicum]
gi|27356394|dbj|BAC53374.1| polypeptide deformylase [Bradyrhizobium
japonicum USDA 110]
Length = 174
Score = 53.5 bits (127), Expect = 2e-06
Identities = 39/122 (31%), Positives = 65/122 (52%), Gaps = 10/122 (8%)
Query: 70 GVGLAAPQLDISKRIIAV-LVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDG 128
G+GLAA Q+ R+I + L E+ + P V NP+V++ S + +
Sbjct: 44 GIGLAAIQIAQPLRLITMDLAKRDENGETKPEP------RVFINPEVIASSEELSVYE-- 95
Query: 129 EGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
EGCLS+ E V R A+V + + D G+ H +G + +QHEIDH++G++F D +
Sbjct: 96 EGCLSIP-EYYEEVERPAKVRVRFTDLDGKVHEEDAEGLYATCIQHEIDHLNGVLFVDYL 154
Query: 189 NE 190
++
Sbjct: 155 SK 156
>gi|24371632|ref|NP_715674.1| polypeptide deformylase [Shewanella
oneidensis MR-1]
gi|32363158|sp|Q8EKQ8|DEF1_SHEON Peptide deformylase 1 (PDF 1)
(Polypeptide deformylase 1)
gi|24345388|gb|AAN53119.1|AE015454_13 polypeptide deformylase
[Shewanella oneidensis MR-1]
Length = 168
Score = 53.5 bits (127), Expect = 2e-06
Identities = 42/143 (29%), Positives = 72/143 (49%), Gaps = 21/143 (14%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + G+GLAA Q+D K++I V +++D P +V NP++++ S
Sbjct: 35 MFETMYQEKGIGLAATQVDYHKQLI---VMDLQDEVERP--------KVFINPEIIASS- 82
Query: 121 QDAALSDGEGCLSVDREVPGYVVRHAR---VTIEYFDKTGEKHRLKLKGYNSIVVQHEID 177
+ EGCLS VPG + R VT++ D+ G + ++ +I +QHE+D
Sbjct: 83 --GDFCNEEGCLS----VPGIYAKVDRAEFVTVKALDRHGNEFTVEADDLFAICIQHEMD 136
Query: 178 HIDGIMFYDRINEKNPFAVKEGL 200
H+ G +F D ++ +K+ L
Sbjct: 137 HLKGKLFVDYLSPLKRQRIKQKL 159
>gi|15617090|ref|NP_240303.1| polypeptide deformylase [Buchnera
aphidicola str. APS (Acyrthosiphon pisum)]
gi|11131992|sp|P57563|DEF_BUCAI Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|25303709|pir||E84987 formylmethionine deformylase (EC 3.5.1.31)
[imported] - Buchnera sp. (strain APS)
gi|10039155|dbj|BAB13189.1| polypeptide deformylase [Buchnera
aphidicola str. APS (Acyrthosiphon pisum)]
Length = 173
Score = 53.5 bits (127), Expect = 2e-06
Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 31/145 (21%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAA Q++I +II +V +E + N V+ NPK++ ++ +S E
Sbjct: 44 GIGLAATQVNIPLQII--VVNTMEQKKNN---------LVLINPKIIK---KEGDISIEE 89
Query: 130 GCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMF----- 184
GCLS+ E + R + ++ + GEK ++ K SI +QHEIDH+ G +F
Sbjct: 90 GCLSIP-EYQASIPRSNYIQVQAVNLDGEKIEIEAKSILSICIQHEIDHLKGKLFIDYLS 148
Query: 185 ----------YDRINEKN-PFAVKE 198
+++IN+KN F++KE
Sbjct: 149 KFKRERIQKKFEKINKKNKKFSIKE 173
>gi|4098215|gb|AAD09580.1| N-formylmethionylaminoacyl-tRNA
deformylase [Helicobacter pylori]
Length = 174
Score = 53.5 bits (127), Expect = 2e-06
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 16/138 (11%)
Query: 55 HSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPK 114
H Q M E + G+GLAA Q+ + R++ + +P + Q E++ NPK
Sbjct: 29 HQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQ-----HKEDCLEII-NPK 82
Query: 115 VVSHSVQDAALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIV 171
+ ++ EGCLS VPG+ V R +V IEY ++ E L+ ++
Sbjct: 83 WIETG---GSIMYKEGCLS----VPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVA 135
Query: 172 VQHEIDHIDGIMFYDRIN 189
+QHEIDH++G++F D+++
Sbjct: 136 IQHEIDHLNGVLFVDKLS 153
>gi|15645412|ref|NP_207586.1| polypeptide deformylase (def)
[Helicobacter pylori 26695]
gi|3023623|sp|P56419|DEF_HELPY Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|7429440|pir||A64619 polypeptide deformylase - Helicobacter
pylori (strain 26695)
gi|2313922|gb|AAD07841.1| polypeptide deformylase (def)
[Helicobacter pylori 26695]
Length = 174
Score = 53.5 bits (127), Expect = 2e-06
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 16/138 (11%)
Query: 55 HSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPK 114
H Q M E + G+GLAA Q+ + R++ + +P + Q E++ NPK
Sbjct: 29 HQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQ-----HKEDCLEII-NPK 82
Query: 115 VVSHSVQDAALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIV 171
+ ++ EGCLS VPG+ V R +V IEY ++ E L+ ++
Sbjct: 83 FIETG---GSMMYREGCLS----VPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVA 135
Query: 172 VQHEIDHIDGIMFYDRIN 189
+QHEIDH++G++F D+++
Sbjct: 136 IQHEIDHLNGVLFVDKLS 153
>gi|29833668|ref|NP_828302.1| putative polypeptide deformylase
[Streptomyces avermitilis MA-4680]
gi|29610792|dbj|BAC74837.1| putative polypeptide deformylase
[Streptomyces avermitilis MA-4680]
Length = 186
Score = 53.5 bits (127), Expect = 2e-06
Identities = 48/170 (28%), Positives = 75/170 (43%), Gaps = 31/170 (18%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISK 82
G+P L EEVT E ++ + M + GVGLAA Q+ +
Sbjct: 20 GDPVLHAPCEEVTDHGPELARLVED-------------MFATMYAANGVGLAANQIGVPL 66
Query: 83 RIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY- 141
R+ P+ ED + + V+ NP+++ L EGCLS +PG
Sbjct: 67 RVFVYDCPDDEDVR--------HVGHVV-NPRLI--EADGVVLRGPEGCLS----LPGLE 111
Query: 142 --VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
R+ R +E F GE R+ G+ + +QHE DH+DG ++ DR++
Sbjct: 112 AGTERYDRAVVEGFTTDGEPVRVLGTGWFARCLQHECDHLDGGVYVDRVS 161
>gi|23469370|ref|ZP_00124704.1| hypothetical protein [Pseudomonas
syringae pv. syringae B728a]
Length = 168
Score = 53.1 bits (126), Expect = 2e-06
Identities = 40/134 (29%), Positives = 70/134 (51%), Gaps = 20/134 (14%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAA Q+++ KR++ V ++ + + P V NP++ + D E
Sbjct: 44 GIGLAATQVNVHKRVV---VMDLSEDRSEP--------MVFINPEI--EKLTDEMDQYQE 90
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS VPG+ V R +V ++ D+ G+ + L +G +I +QHE DH++G +F D
Sbjct: 91 GCLS----VPGFYENVDRPQKVRVKALDRDGKPYELVAEGLLAICIQHECDHLNGKLFVD 146
Query: 187 RINEKNPFAVKEGL 200
++ +K+ L
Sbjct: 147 YLSNLKRDRIKKKL 160
>gi|16078635|ref|NP_389454.1| polypeptide deformylase [Bacillus
subtilis]
gi|2499922|sp|P94462|DEF1_BACSU Peptide deformylase 1 (PDF 1)
(Polypeptide deformylase 1)
gi|7429441|pir||F69613 polypeptide deformylase def - Bacillus
subtilis
gi|1772499|emb|CAA71349.1| polypeptide deformylase [Bacillus
subtilis]
gi|2337801|emb|CAA74262.1| putative Def protein [Bacillus subtilis]
gi|2633944|emb|CAB13445.1| polypeptide deformylase [Bacillus
subtilis subsp. subtilis str. 168]
Length = 160
Score = 53.1 bits (126), Expect = 2e-06
Identities = 47/158 (29%), Positives = 78/158 (48%), Gaps = 21/158 (13%)
Query: 33 EVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNV 92
EV +E + +K+ + L D ++ GVGLAAPQ+ I KR V +
Sbjct: 12 EVLETPAETVTVFDKKLKKLLDDMYDTMLE-----MDGVGLAAPQIGILKRAAVV---EI 63
Query: 93 EDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEY 152
D +G + NP+++ S + + EGCLS V G V R V +
Sbjct: 64 GDDRGRID---------LVNPEILEKSGEQTGI---EGCLSFP-NVYGDVTRADYVKVRA 110
Query: 153 FDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE 190
F++ G+ L+ +G+ + VQHE+DH+DG++F +I++
Sbjct: 111 FNRQGKPFILEARGFLARAVQHEMDHLDGVLFTSKISK 148
>gi|15611796|ref|NP_223447.1| POLYPEPTIDE DEFORMYLASE [Helicobacter
pylori J99]
gi|8134402|sp|Q9ZL51|DEF_HELPJ Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|7445083|pir||G71895 polypeptide deformylase - Helicobacter
pylori (strain J99)
gi|4155293|gb|AAD06310.1| POLYPEPTIDE DEFORMYLASE [Helicobacter
pylori J99]
Length = 174
Score = 52.8 bits (125), Expect = 3e-06
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 16/138 (11%)
Query: 55 HSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPK 114
H Q M E + G+GLAA Q+ + R++ + +P + Q E++ NPK
Sbjct: 29 HQQLDDMHETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQ-----HKEDCLEII-NPK 82
Query: 115 VVSHSVQDAALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIV 171
+ ++ EGCLS VPG+ V R +V IEY ++ E L+ ++
Sbjct: 83 WIE---TKGSIMYREGCLS----VPGFYEEVERFEKVKIEYQNRFAEVKILEASELLAVA 135
Query: 172 VQHEIDHIDGIMFYDRIN 189
+QHEIDH++G++F D+++
Sbjct: 136 IQHEIDHLNGVLFVDKLS 153
>gi|21230162|ref|NP_636079.1| peptide deformylase [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|25452914|sp|Q8PCN7|DEF_XANCP Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|21111696|gb|AAM40003.1| peptide deformylase [Xanthomonas
campestris pv. campestris str. ATCC 33913]
Length = 171
Score = 52.8 bits (125), Expect = 3e-06
Identities = 54/193 (27%), Positives = 87/193 (44%), Gaps = 35/193 (18%)
Query: 16 MNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAA 75
+ +IIR G+ L +VA VT S++ L M + + ++ GVGLAA
Sbjct: 2 IREIIRMGDKRLLRVAPPVTNLGSDELHALVADMFETMDAAR------------GVGLAA 49
Query: 76 PQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDG-----EG 130
PQ+ + + ++V E ++ P A P+ +VQ LSD EG
Sbjct: 50 PQIAVD---LQLMVFGFEASERYPEAPAV--------PRTALANVQIEPLSDEMENGWEG 98
Query: 131 CLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDR 187
CLS +PG + RH + F G + +G+++ VVQHE DH+ G ++ R
Sbjct: 99 CLS----IPGLRAVIPRHRVIRYSGFAPDGTPIEREAEGFHARVVQHEYDHLVGRLYPSR 154
Query: 188 INEKNPFAVKEGL 200
I + F ++ L
Sbjct: 155 IENFDTFGFEDVL 167
>gi|13474065|ref|NP_105633.1| N-formylmethionylaminoacyl-tRNA
deformylase (EC 3.5.1.27) [Mesorhizobium loti]
gi|23396550|sp|Q98D52|DEF_RHILO Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|14024817|dbj|BAB51419.1| N-formylmethionylaminoacyl-tRNA
deformylase [Mesorhizobium loti]
Length = 176
Score = 52.8 bits (125), Expect = 4e-06
Identities = 38/124 (30%), Positives = 65/124 (51%), Gaps = 18/124 (14%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAA Q+ R++ + + ED P V NP+++ + + E
Sbjct: 44 GIGLAAIQIGEPLRMLVIDLAK-EDETPAP--------HVFINPEILESAEARSVYE--E 92
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYD 186
GCLS +P Y V R A V ++Y D+ G+ ++ +G + +QHEIDH++G++F D
Sbjct: 93 GCLS----IPDYYAEVERPASVRVKYLDRDGKLQEMEAEGLMATCLQHEIDHLNGVLFID 148
Query: 187 RINE 190
I++
Sbjct: 149 HISK 152
>gi|26986813|ref|NP_742238.1| polypeptide deformylase [Pseudomonas
putida KT2440]
gi|32363155|sp|Q88RR1|DEF1_PSEPK Peptide deformylase 1 (PDF 1)
(Polypeptide deformylase 1)
gi|24981409|gb|AAN65702.1|AE016196_13 polypeptide deformylase
[Pseudomonas putida KT2440]
Length = 168
Score = 52.4 bits (124), Expect = 5e-06
Identities = 51/188 (27%), Positives = 94/188 (49%), Gaps = 37/188 (19%)
Query: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77
+I+ +P LR +A+ P++E ++ L + + M E + G+GLAA Q
Sbjct: 5 NILEFPDPRLRTLAK----PVTEFDDALRQLIDD---------MFETMYEAPGIGLAATQ 51
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKV--VSHSVQDAALSDGEGCLSVD 135
+++ K+++ V ++ + + P V NP V ++H + EGCLS
Sbjct: 52 VNVHKQVV---VMDLSEDRSEP--------RVFINPSVEELTHDMGQYQ----EGCLS-- 94
Query: 136 REVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEKN 192
VPG+ V R RV ++ D+ G+ L+ +G ++ VQHE DH++G +F D +++
Sbjct: 95 --VPGFYENVDRPLRVRVKAQDRDGKPFELECEGLLAVCVQHEFDHLNGKLFVDYLSQLK 152
Query: 193 PFAVKEGL 200
+K+ L
Sbjct: 153 RDRIKKKL 160
>gi|23336215|ref|ZP_00121440.1| hypothetical protein
[Bifidobacterium longum DJO10A]
Length = 171
Score = 52.0 bits (123), Expect = 6e-06
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 71 VGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEG 130
VG+AA + + KRII + ED G VM NP + + D A EG
Sbjct: 74 VGMAANMIGVGKRIIVFV---DEDLGGRI--------TVMLNPVI---TASDGAFDTQEG 119
Query: 131 CLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIM 183
CLS+ E +R+ R+ + Y ++ G+ + ++QHE+DH +GI+
Sbjct: 120 CLSLTGE--RRTLRYRRIEVNYENRRFRARHATFAGWTAQIIQHEVDHCNGII 170
>gi|28900639|ref|NP_800294.1| polypeptide deformylase [Vibrio
parahaemolyticus RIMD 2210633]
gi|31076642|sp|Q87I22|DEF2_VIBPA Peptide deformylase 2 (PDF 2)
(Polypeptide deformylase 2)
gi|28809019|dbj|BAC62127.1| polypeptide deformylase [Vibrio
parahaemolyticus]
Length = 168
Score = 52.0 bits (123), Expect = 7e-06
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 17/140 (12%)
Query: 61 MAEKLGLRG-GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHS 119
M E L G G+GLA+ Q+ R AV+V ++ D + +P ++ NP+VVS
Sbjct: 34 MLETLYATGNGIGLASTQVG---RKEAVVVIDISDERNDP--------LILVNPEVVSG- 81
Query: 120 VQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHI 179
++ AL EGCLSV E V R+ V + D+ G ++ + +IV+QHEIDH+
Sbjct: 82 -ENKALGQ-EGCLSVP-EYYADVERYTSVVVSALDRDGNPITIESDEFLAIVMQHEIDHL 138
Query: 180 DGIMFYDRINE-KNPFAVKE 198
G +F D ++ K A+K+
Sbjct: 139 SGNLFIDYLSPLKQKMAMKK 158
>gi|28210907|ref|NP_781851.1| polypeptide deformylase [Clostridium
tetani E88]
gi|28203346|gb|AAO35788.1| polypeptide deformylase [Clostridium
tetani E88]
Length = 150
Score = 51.6 bits (122), Expect = 7e-06
Identities = 44/162 (27%), Positives = 83/162 (51%), Gaps = 23/162 (14%)
Query: 27 LRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIA 86
LR + +E+ S + E + +++ L M + + GVGLAAPQ+ I KR++
Sbjct: 6 LRFLGDELLRKKSRRVEKIDDRIQALLDD-----MLDTMYENNGVGLAAPQVGILKRVVV 60
Query: 87 VLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHA 146
+ + G P + NP+++ Q+ + + EGCLSV G V R
Sbjct: 61 IDI-------GEGPL-------FLINPEIIE---QEGSYIEQEGCLSVPGR-QGEVERPY 102
Query: 147 RVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRI 188
RV ++ ++ G++ ++ + + + + HEIDH++G++F D+I
Sbjct: 103 RVKVKAQNRDGKEIIVEGEEFLAKALCHEIDHLNGVLFVDKI 144
>gi|27904914|ref|NP_778040.1| polypeptide deformylase [Buchnera
aphidicola (Baizongia pistaciae)]
gi|29611708|sp|P59493|DEF_BUCBP Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|27904312|gb|AAO27145.1| polypeptide deformylase [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
Length = 160
Score = 51.6 bits (122), Expect = 7e-06
Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 21/132 (15%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M + + G+GLAA Q++I +II ++ +E+ N P V+ NPK+ S
Sbjct: 35 MFDTMYYENGIGLAATQVNIPLQII--VIDKIEEL--NHPL-------VLINPKITKRS- 82
Query: 121 QDAALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEID 177
S EGCLS +P Y + R ++T+ + G++ +LK SI +QHEID
Sbjct: 83 --GLTSIQEGCLS----IPNYQAEISRSKKITVTALNYFGKRIKLKTSSTLSICIQHEID 136
Query: 178 HIDGIMFYDRIN 189
H+ G + D ++
Sbjct: 137 HLIGKLLIDYLS 148
>gi|25028276|ref|NP_738330.1| putative polypeptide deformylase
[Corynebacterium efficiens YS-314]
gi|23493560|dbj|BAC18530.1| putative polypeptide deformylase
[Corynebacterium efficiens YS-314]
Length = 169
Score = 51.6 bits (122), Expect = 8e-06
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 16 MNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAA 75
+ D+ G+P L A+EV E L + M ++ + GGVGLAA
Sbjct: 3 VRDVRIFGDPVLTSRADEVV-DFDESLATLIDDMFDTMEDA------------GGVGLAA 49
Query: 76 PQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVD 135
Q+ + +R+ +V+ L+ + NP V + + + EGCLS+
Sbjct: 50 NQVGVLRRVFVFDCSHVDGG----------LRGHVVNP--VWEPIGEETQTGKEGCLSIP 97
Query: 136 REVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+V R+ V + D+ G L G S +QHE DH+DG++F R++
Sbjct: 98 -DVSAETTRYETVKLSGQDRDGNPIGLVASGLLSRCIQHETDHLDGVLFLKRLD 150
>gi|23063843|ref|ZP_00088347.1| hypothetical protein [Pseudomonas
fluorescens PfO-1]
Length = 182
Score = 51.6 bits (122), Expect = 8e-06
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 33/175 (18%)
Query: 10 ASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRG 69
A L+ + +I+ +P LR +A+ V E +++ + M E +
Sbjct: 37 AIKLMAILNILEFPDPRLRTIAKPVAVVDDEVRQLVDD-------------MFETMYEAP 83
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAA Q+++ KRI+ V ++ + + P V NP+ S+ D E
Sbjct: 84 GIGLAATQVNVHKRIV---VMDLSEDRTEP--------RVFINPEF--ESLTDEMEQYQE 130
Query: 130 GCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDG 181
GCLS VPG+ V R +V I+ D+ G+ + L +G ++ +QHE DH G
Sbjct: 131 GCLS----VPGFYENVDRPQKVKIKALDRDGKPYELIAEGLLAVCIQHECDHHKG 181
>gi|21672742|ref|NP_660809.1| polypeptide deformylase [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
gi|25008354|sp|Q8K975|DEF_BUCAP Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|21623388|gb|AAM68020.1| polypeptide deformylase [Buchnera
aphidicola str. Sg (Schizaphis graminum)]
Length = 167
Score = 51.2 bits (121), Expect = 9e-06
Identities = 36/121 (29%), Positives = 61/121 (49%), Gaps = 15/121 (12%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAA Q++I +II + A ++ NPK++ + ++S E
Sbjct: 44 GIGLAATQVNIQLQIIVI-----------HKIHAIEKNLILINPKIIE---KKGSISIEE 89
Query: 130 GCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
GCLS+ E +V R + I+ + G ++ SI +QHEIDH++G +F D ++
Sbjct: 90 GCLSIP-EYRAFVPRFNYIKIQAINLNGNTVEIEADSILSICIQHEIDHLNGKLFIDYLS 148
Query: 190 E 190
E
Sbjct: 149 E 149
>gi|22982955|ref|ZP_00028172.1| hypothetical protein [Burkholderia
fungorum]
Length = 167
Score = 51.2 bits (121), Expect = 9e-06
Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 33/175 (18%)
Query: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77
+II + L K+A+ V E + +++ + +K MAE + GVGLAA Q
Sbjct: 5 NIINYPDKRLHKIAKPV--------EAVNDRIRRLVKD-----MAETMYAAPGVGLAATQ 51
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137
+D+ +R+I + V + ++ NP+++ S + LS+ EGCLS
Sbjct: 52 VDVHERVIVIDV-----------SDDHNELLTFINPEIIWSS-DERKLSE-EGCLS---- 94
Query: 138 VPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
VPG V R +V + ++ GE + +G ++ +QHE+DH+ G +F + ++
Sbjct: 95 VPGIYDNVERAEKVRVRALNEKGETFEMDCEGLLAVCIQHEMDHLMGRVFVEYLS 149
>gi|23104589|ref|ZP_00091051.1| hypothetical protein [Azotobacter
vinelandii]
Length = 168
Score = 51.2 bits (121), Expect = 1e-05
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 20/132 (15%)
Query: 61 MAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSV 120
M E + G+GLAA Q+++ KR++ V ++ + + P V NP+ ++
Sbjct: 35 MFETMYAAPGIGLAATQVNVHKRLV---VMDLSEDKNEP--------RVFINPEF--EAL 81
Query: 121 QDAALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEID 177
+ EGCLS VPG+ V R +V I D+ G+ L +G ++ +QHE D
Sbjct: 82 TEELEPYQEGCLS----VPGFYENVDRPQKVRIRALDRDGQPFELVAEGLLAVCIQHECD 137
Query: 178 HIDGIMFYDRIN 189
H++G +F D ++
Sbjct: 138 HLNGKLFVDYLS 149
>gi|23466247|ref|NP_696850.1| polypeptide deformylase
[Bifidobacterium longum NCC2705]
gi|23326994|gb|AAN25486.1|AE014804_3 polypeptide deformylase
[Bifidobacterium longum NCC2705]
Length = 139
Score = 51.2 bits (121), Expect = 1e-05
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 71 VGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEG 130
VG+AA + + KRII + ED G VM NP + + D A EG
Sbjct: 42 VGMAANMIGVGKRIIVFV---DEDLGGRI--------TVMLNPVI---TASDGAFDTQEG 87
Query: 131 CLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIM 183
CLS+ E +R+ R+ + Y ++ G+ + ++QHE+DH +GI+
Sbjct: 88 CLSLTGE--RRTLRYRRIEVNYENRRFRARHATFAGWTAQIIQHEVDHCNGII 138
>gi|15674896|ref|NP_269070.1| putative polypeptide deformylase
[Streptococcus pyogenes]
gi|21910126|ref|NP_664394.1| putative polypeptide deformylase
[Streptococcus pyogenes MGAS315]
gi|28896175|ref|NP_802525.1| putative polypeptide deformylase
[Streptococcus pyogenes SSI-1]
gi|13622035|gb|AAK33791.1| putative polypeptide deformylase
[Streptococcus pyogenes M1 GAS]
gi|21904318|gb|AAM79197.1| putative polypeptide deformylase
[Streptococcus pyogenes MGAS315]
gi|28811426|dbj|BAC64358.1| putative polypeptide deformylase
[Streptococcus pyogenes SSI-1]
Length = 136
Score = 51.2 bits (121), Expect = 1e-05
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 23/115 (20%)
Query: 71 VGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEG 130
+G+AA + KRI+ V + ++ VM+NP +VS + E
Sbjct: 42 LGMAANMIGEQKRIVIVSMGFID--------------LVMFNPVMVS---KKGIYQTKES 84
Query: 131 CLSVDREVPGY--VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIM 183
CLS+ GY R+ ++T+EY D RL L G + + QHE+DH++GI+
Sbjct: 85 CLSLS----GYRKTQRYDKITVEYLDHNWRPKRLSLTGLTAQICQHELDHLEGIL 135
>gi|27659066|ref|XP_214675.1| similar to peptide deformylase-like
protein [Homo sapiens] [Rattus norvegicus]
Length = 141
Score = 51.2 bits (121), Expect = 1e-05
Identities = 42/132 (31%), Positives = 66/132 (49%), Gaps = 18/132 (13%)
Query: 68 RGGVGLAAPQLDISKRIIAVLVPNVEDAQGNP------PKEAYSLQEVMYNPKVVSHSVQ 121
RG VGL+APQL + +++ + P+ +P E + L+ V+ NP S V
Sbjct: 4 RGCVGLSAPQLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLR-VLVNP---SLRVL 59
Query: 122 DAAL-SDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEID 177
D+ L + EGC S V G+ V R V I D GE G+ + ++QHE+D
Sbjct: 60 DSRLVTFPEGCES----VAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQHEMD 115
Query: 178 HIDGIMFYDRIN 189
H+ G +F D+++
Sbjct: 116 HLHGCLFIDKMD 127
>gi|23110210|ref|ZP_00096370.1| hypothetical protein
[Novosphingobium aromaticivorans]
Length = 188
Score = 51.2 bits (121), Expect = 1e-05
Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 19/133 (14%)
Query: 70 GVGLAAPQLDISKRIIAV-LVPNVEDAQ------------GNPPKEAYSLQEVMYNPKVV 116
G+GLAA Q+ + R++ + L P+ DA+ P K+ V NP+++
Sbjct: 44 GIGLAAIQVGVPLRVLVIDLQPDDPDAEPVACDHDGHHHHHQPTKKE---PRVFINPEIL 100
Query: 117 SHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEI 176
S + + EGCLSV E+ V R A + + D G+ H +++G + +QHE+
Sbjct: 101 DPSEEYSVYQ--EGCLSVP-EIYAEVERPATIRARWQDLDGKVHEEQMEGLMATCLQHEM 157
Query: 177 DHIDGIMFYDRIN 189
DH++G++F D ++
Sbjct: 158 DHLEGVLFIDHLS 170
>gi|33242441|ref|NP_877382.1| polypeptide deformylase [Chlamydophila
pneumoniae TW-183]
gi|33236952|gb|AAP99039.1| polypeptide deformylase [Chlamydophila
pneumoniae TW-183]
Length = 204
Score = 50.8 bits (120), Expect = 1e-05
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 28/183 (15%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISK 82
G+P LRK + + E ++ + M + + GVGLAAPQ+ +
Sbjct: 27 GSPILRKKSSPIAEITDEIRNLVSD-------------MCDTMEAHRGVGLAAPQVGKNV 73
Query: 83 RIIAVLVP-NVEDAQ---GNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
+ + V ED + P+ V NP + S + + EGCLS+ +
Sbjct: 74 SLFVMCVDRETEDGELIFSESPR-------VFINPVLSDPS--ETPIIGKEGCLSIP-GL 123
Query: 139 PGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE-KNPFAVK 197
G V R ++T+ D G+ L+G+ + ++ HE DH++G+++ D + E K+P K
Sbjct: 124 RGEVFRPQKITVTAMDLNGKIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPKDPKKFK 183
Query: 198 EGL 200
L
Sbjct: 184 ASL 186
>gi|18309742|ref|NP_561676.1| polypeptide deformylase [Clostridium
perfringens]
gi|18144420|dbj|BAB80466.1| polypeptide deformylase [Clostridium
perfringens str. 13]
Length = 136
Score = 50.8 bits (120), Expect = 1e-05
Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 27/159 (16%)
Query: 27 LRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIA 86
+R + ++V F L +K E+ ++ + + D + A L VG+AA + + KRI+
Sbjct: 2 IRPIVKDVLF-LGQKSELATKEDIGIIDDLVDTLRAN---LESCVGMAANMIGVKKRILV 57
Query: 87 VLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY--VVR 144
+ N+ M NP ++ ++ + E CLS+ G+ R
Sbjct: 58 FSIGNIIVP--------------MVNPVILK---KEKSYETEESCLSLT----GFRKTTR 96
Query: 145 HARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIM 183
+ + +EY D+ +KH+ G+ + ++QHE+DH +GI+
Sbjct: 97 YEIIEVEYLDRNFKKHKETFSGFTAQIIQHEVDHFEGII 135
>gi|19745939|ref|NP_607075.1| putative polypeptide deformylase
[Streptococcus pyogenes MGAS8232]
gi|19748096|gb|AAL97574.1| putative polypeptide deformylase
[Streptococcus pyogenes MGAS8232]
Length = 136
Score = 50.8 bits (120), Expect = 1e-05
Identities = 40/150 (26%), Positives = 72/150 (47%), Gaps = 26/150 (17%)
Query: 36 FPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDA 95
F L +K ++ ++ + + QD ++ + + +G+AA + KRI+ V + ++
Sbjct: 10 FLLQQKAQVAKKEDLWIGQDLQDTLVFYR---QECLGMAANMIGEQKRIVIVSMGFID-- 64
Query: 96 QGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGY--VVRHARVTIEYF 153
VM+NP +VS + E CLS+ GY R+ ++T+EY
Sbjct: 65 ------------LVMFNPVMVS---KKGIYQTKESCLSLS----GYRKTQRYDKITVEYL 105
Query: 154 DKTGEKHRLKLKGYNSIVVQHEIDHIDGIM 183
D RL L G + + QHE+DH++GI+
Sbjct: 106 DHNWRPKRLSLTGLTAQICQHELDHLEGIL 135
>gi|28262164|gb|EAA25668.1| polypeptide deformylase [Rickettsia
sibirica]
Length = 176
Score = 50.8 bits (120), Expect = 1e-05
Identities = 43/152 (28%), Positives = 76/152 (49%), Gaps = 9/152 (5%)
Query: 38 LSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQG 97
L +K + + E Q K D M + + G GLAA Q+ + KRI+ + + + +
Sbjct: 15 LKQKSQPVLEFTDQTRKFMDD--MLKTMYHEDGAGLAAVQVGVLKRILVIDIQDHDSVA- 71
Query: 98 NPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTG 157
PK+ Y L + NP+++ + + ++ EGC+S+ E V R + I Y D G
Sbjct: 72 -RPKDFYPL--FIVNPEIIEKA--EELVTANEGCISLP-EQRIEVARPESIKIRYLDYHG 125
Query: 158 EKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+ LK + + V+QHE DH++G + D ++
Sbjct: 126 KSQELKANDWLARVIQHEYDHLEGKLMIDYLS 157
>gi|17989157|ref|NP_541790.1| POLYPEPTIDE DEFORMYLASE [Brucella
melitensis]
gi|25527665|pir||AC3611 formylmethionine deformylase (EC 3.5.1.31)
[imported] - Brucella melitensis (strain 16M)
gi|17985009|gb|AAL54054.1| POLYPEPTIDE DEFORMYLASE [Brucella
melitensis 16M]
Length = 203
Score = 50.8 bits (120), Expect = 1e-05
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 34/169 (20%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I++ +P LR AE VT E L + ++ ++ + G+G+ AP +
Sbjct: 45 IVKYPDPRLRAAAEPVT-TFDEGLRKLADDLLDTMRAAP------------GIGITAPHI 91
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
ISKR++ V ++ A G PK + NP++V + + EG +S +
Sbjct: 92 GISKRVV---VLELDRAAG--PK-------IYINPEIVWAC--EEKIRHQEGSVS----M 133
Query: 139 PGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMF 184
PG V RHAR+ + Y D G + + G ++ QHEID +DGI +
Sbjct: 134 PGVVDEVERHARIRLRYQDLDGNEQTEESDGLLAVCHQHEIDQLDGIFW 182
>gi|33357406|pdb|1N5N|A Chain A, Crystal Structure Of Peptide
Deformylase From Pseudomonas Aeruginosa
gi|33357407|pdb|1N5N|B Chain B, Crystal Structure Of Peptide
Deformylase From Pseudomonas Aeruginosa
Length = 180
Score = 50.4 bits (119), Expect = 2e-05
Identities = 50/188 (26%), Positives = 89/188 (46%), Gaps = 33/188 (17%)
Query: 5 DKLVKASHLIDMNDIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEK 64
DK+ H + + +I+ +P LR +A+ V E++ + + Q + M E
Sbjct: 4 DKIHHHHHHMAILNILEFPDPRLRTIAKPV--------EVVDDAVRQLIDD-----MFET 50
Query: 65 LGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAA 124
+ G+GLAA Q+++ KRI+ V ++ + + P V NP+ + +
Sbjct: 51 MYEAPGIGLAATQVNVHKRIV---VMDLSEDKSEP--------RVFINPEF--EPLTEEM 97
Query: 125 LSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDG 181
EGCLS VPG+ V R +V I+ D+ G +G ++ +QHE DH++G
Sbjct: 98 DQYQEGCLS----VPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNG 153
Query: 182 IMFYDRIN 189
+F D ++
Sbjct: 154 KLFVDYLS 161
>gi|15892201|ref|NP_359915.1| polypeptide deformylase [EC:3.5.1.31]
[Rickettsia conorii]
gi|20137640|sp|Q92IZ1|DEF1_RICCN Peptide deformylase 1 (PDF 1)
(Polypeptide deformylase 1)
gi|25303717|pir||F97734 formylmethionine deformylase (EC 3.5.1.31)
- Rickettsia conorii (strain Malish 7)
gi|15619334|gb|AAL02816.1| polypeptide deformylase [EC:3.5.1.31]
[Rickettsia conorii]
Length = 175
Score = 50.4 bits (119), Expect = 2e-05
Identities = 43/152 (28%), Positives = 76/152 (49%), Gaps = 9/152 (5%)
Query: 38 LSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQG 97
L +K + + E Q K D M + + G GLAA Q+ + KRI+ + + + +
Sbjct: 14 LKQKSQPVLEFTDQTRKFMDD--MLKTMYHEDGAGLAAVQVGVLKRILVIDIQDHDSVA- 70
Query: 98 NPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREVPGYVVRHARVTIEYFDKTG 157
PK+ Y L + NP+++ + + ++ EGC+S+ E V R + I Y D G
Sbjct: 71 -RPKDFYPL--FIVNPEIIEKA--EELVTANEGCISLP-EQRIEVARPESIKIRYLDYHG 124
Query: 158 EKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
+ LK + + V+QHE DH++G + D ++
Sbjct: 125 KSRELKANDWLARVIQHEYDHLEGKLMIDYLS 156
>gi|15618975|ref|NP_225261.1| Polypeptide Deformylase [Chlamydophila
pneumoniae CWL029]
gi|15836598|ref|NP_301122.1| polypeptide deformylase [Chlamydophila
pneumoniae J138]
gi|16753049|ref|NP_445322.1| polypeptide deformylase [Chlamydophila
pneumoniae AR39]
gi|6225254|sp|Q9Z6J2|DEF_CHLPN Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|7445089|pir||E72000 polypeptide deformylase CP0783 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
gi|25303710|pir||H86623 polypeptide deformylase [imported] -
Chlamydophila pneumoniae (strain J138)
gi|4377403|gb|AAD19204.1| Polypeptide Deformylase [Chlamydophila
pneumoniae CWL029]
gi|7189698|gb|AAF38582.1| polypeptide deformylase [Chlamydophila
pneumoniae AR39]
gi|8979440|dbj|BAA99274.1| polypeptide deformylase [Chlamydophila
pneumoniae J138]
Length = 186
Score = 50.4 bits (119), Expect = 2e-05
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 28/183 (15%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISK 82
G+P LRK + + E ++ + M + + GVGLAAPQ+ +
Sbjct: 9 GSPILRKKSSPIAEITDEIRNLVSD-------------MCDTMEAHRGVGLAAPQVGKNV 55
Query: 83 RIIAVLVP-NVEDAQ---GNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
+ + V ED + P+ V NP + S + + EGCLS+ +
Sbjct: 56 SLFVMCVDRETEDGELIFSESPR-------VFINPVLSDPS--ETPIIGKEGCLSIP-GL 105
Query: 139 PGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE-KNPFAVK 197
G V R ++T+ D G+ L+G+ + ++ HE DH++G+++ D + E K+P K
Sbjct: 106 RGEVFRPQKITVTAMDLNGKIFTEHLEGFTARIIMHETDHLNGVLYIDLMEEPKDPKKFK 165
Query: 198 EGL 200
L
Sbjct: 166 ASL 168
>gi|29829575|ref|NP_824209.1| putative polypeptide deformylase
[Streptomyces avermitilis MA-4680]
gi|29606683|dbj|BAC70744.1| putative polypeptide deformylase
[Streptomyces avermitilis MA-4680]
Length = 216
Score = 50.1 bits (118), Expect = 2e-05
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 26/171 (15%)
Query: 23 GNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQLDISK 82
GNP L K ++VT +E E+++ + M GVGLAA Q+ +
Sbjct: 48 GNPVLHKECKDVTDFGAELEQLVAD-------------MFASQRTAEGVGLAANQIGVD- 93
Query: 83 RIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDG-EGCLSVDRE-VPG 140
+ V V + +D +G V+ NPK+V L D EGCLSV P
Sbjct: 94 --LKVFVYDCQDDEGT------RHVGVVCNPKLVDLPADRRRLDDSNEGCLSVPTAYAPL 145
Query: 141 YVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINEK 191
+A VT + D+ G +++ GY + +QHE DH+ G ++ DR++++
Sbjct: 146 ARPDYAEVTGQ--DEKGNPIKVRGTGYFARCLQHETDHLYGYLYIDRLSKR 194
>gi|24374073|ref|NP_718116.1| polypeptide deformylase [Shewanella
oneidensis MR-1]
gi|32363156|sp|Q8EE60|DEF3_SHEON Peptide deformylase 3 (PDF 3)
(Polypeptide deformylase 3)
gi|24348554|gb|AAN55560.1|AE015695_2 polypeptide deformylase
[Shewanella oneidensis MR-1]
Length = 163
Score = 50.1 bits (118), Expect = 2e-05
Identities = 50/187 (26%), Positives = 93/187 (48%), Gaps = 39/187 (20%)
Query: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILG--EKMMQFLKHSQDPIMAEKLGLRGGVGLAA 75
DI+ + L++ A+ P+ + E I G + +++ + H+ D G+GLA+
Sbjct: 5 DILTIPDERLKRKAQ----PVKDIEAIQGFIDDLIETMYHTDD-----------GIGLAS 49
Query: 76 PQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVD 135
Q+ + AV+V ++ + + P V+ NP++V S + EGCLS
Sbjct: 50 TQVGSTD---AVIVIDLSETRDQP--------LVLVNPEIVEKSGEYVG---EEGCLS-- 93
Query: 136 REVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRINE-K 191
+PGY V R +V + D+ G+ ++ + +IV+QHEIDH+ G +F + ++ K
Sbjct: 94 --IPGYRAKVTRFEKVKVTALDRQGKAIEIETDDFLAIVLQHEIDHLHGKVFIEHLSTLK 151
Query: 192 NPFAVKE 198
A+K+
Sbjct: 152 QQIALKK 158
>gi|23500203|ref|NP_699643.1| polypeptide deformylase [Brucella suis
1330]
gi|23396563|sp|Q8YBS4|DEFL_BRUME Peptide deformylase-like
(Polypeptide deformylase-like)
gi|23463805|gb|AAN33648.1|AE014543_12 polypeptide deformylase
[Brucella suis 1330]
Length = 164
Score = 49.7 bits (117), Expect = 3e-05
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 34/169 (20%)
Query: 19 IIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQL 78
I++ +P LR AE VT E L + ++ ++ + G+G+ AP +
Sbjct: 6 IVKYPDPRLRAAAEPVT-TFDEGLRKLADDLLDTMRAAP------------GIGITAPHI 52
Query: 79 DISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDREV 138
ISKR++ V ++ A G PK + NP++V + + EG +S +
Sbjct: 53 GISKRVV---VLELDRAAG--PK-------IYINPEIVWAC--EEKIRHQEGSVS----M 94
Query: 139 PGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMF 184
PG V RHAR+ + Y D G + + G ++ QHEID +DGI +
Sbjct: 95 PGVVDEVERHARIRLRYQDLDGNEQTEESDGLLAVCHQHEIDQLDGIFW 143
>gi|22219294|pdb|1LRY|A Chain A, Crystal Structure Of P. Aeruginosa
Peptide Deformylase Complexed With Antibiotic Actinonin
Length = 167
Score = 48.9 bits (115), Expect = 5e-05
Identities = 47/175 (26%), Positives = 83/175 (46%), Gaps = 33/175 (18%)
Query: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77
+I+ +P LR +A+ V E++ + + Q + M E + G+GLAA Q
Sbjct: 4 NILEFPDPRLRTIAKPV--------EVVDDAVRQLIDD-----MFETMYEAPGIGLAATQ 50
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137
+++ KRI+ V ++ + + P V NP+ + + EGCLS
Sbjct: 51 VNVHKRIV---VMDLSEDKSEP--------RVFINPEF--EPLTEDMDQYQEGCLS---- 93
Query: 138 VPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
VPG+ V R +V I+ D+ G +G ++ +QHE DH++G +F D ++
Sbjct: 94 VPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLS 148
>gi|15595217|ref|NP_248709.1| polypeptide deformylase [Pseudomonas
aeruginosa PA01]
gi|17432949|sp|Q9I7A8|DEF_PSEAE Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|11350816|pir||H83643 polypeptide deformylase PA0019 [imported] -
Pseudomonas aeruginosa (strain PAO1)
gi|9945838|gb|AAG03409.1|AE004441_10 polypeptide deformylase
[Pseudomonas aeruginosa PAO1]
Length = 168
Score = 48.9 bits (115), Expect = 5e-05
Identities = 47/175 (26%), Positives = 83/175 (46%), Gaps = 33/175 (18%)
Query: 18 DIIREGNPTLRKVAEEVTFPLSEKEEILGEKMMQFLKHSQDPIMAEKLGLRGGVGLAAPQ 77
+I+ +P LR +A+ V E++ + + Q + M E + G+GLAA Q
Sbjct: 5 NILEFPDPRLRTIAKPV--------EVVDDAVRQLIDD-----MFETMYEAPGIGLAATQ 51
Query: 78 LDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEGCLSVDRE 137
+++ KRI+ V ++ + + P V NP+ + + EGCLS
Sbjct: 52 VNVHKRIV---VMDLSEDKSEP--------RVFINPEF--EPLTEDMDQYQEGCLS---- 94
Query: 138 VPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
VPG+ V R +V I+ D+ G +G ++ +QHE DH++G +F D ++
Sbjct: 95 VPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLS 149
>gi|16124527|ref|NP_419091.1| polypeptide deformylase [Caulobacter
crescentus CB15]
gi|23396553|sp|Q9ABF5|DEF_CAUCR Peptide deformylase (PDF)
(Polypeptide deformylase)
gi|25303708|pir||G87282 polypeptide deformylase [imported] -
Caulobacter crescentus
gi|13421407|gb|AAK22259.1| polypeptide deformylase [Caulobacter
crescentus CB15]
Length = 173
Score = 48.5 bits (114), Expect = 6e-05
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 70 GVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGE 129
G+GLAA Q+ R+I + + + + P+ NP++++ S E
Sbjct: 48 GIGLAAVQVGEPVRVIVMDL--AREGEDKAPR-------YFVNPEILASSEDLQGYE--E 96
Query: 130 GCLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDGIMFYDRIN 189
GCLSV E V R ++VT+ Y + GE + +G ++ +QHE+DH++G++F D ++
Sbjct: 97 GCLSVP-EYYDEVERPSKVTLRYMNYQGETVVEEAEGLFAVCIQHEMDHLEGVLFIDHLS 155
>gi|15888871|ref|NP_354552.1| AGR_C_2856p [Agrobacterium
tumefaciens]
gi|17935449|ref|NP_532239.1| polypeptide deformylase [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gi|23396558|sp|Q8UF49|DEFL_AGRT5 Peptide deformylase-like
(Polypeptide deformylase-like)
gi|25303725|pir||H97547 polypeptide deformylase (PA0019) [imported]
- Agrobacterium tumefaciens (strain C58, Cereon)
gi|25303726|pir||AE2767 polypeptide deformylase def [imported] -
Agrobacterium tumefaciens (strain C58, Dupont)
gi|15156637|gb|AAK87337.1| AGR_C_2856p [Agrobacterium tumefaciens
str. C58 (Cereon)]
gi|17739978|gb|AAL42555.1| polypeptide deformylase [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 164
Score = 48.5 bits (114), Expect = 7e-05
Identities = 28/81 (34%), Positives = 47/81 (57%), Gaps = 9/81 (11%)
Query: 112 NPKVVSHSVQDAALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYN 168
NP++ SHS Q + EG +S +PG+ V R + V + + D TG + +G++
Sbjct: 73 NPEITSHSPQ--TMRHVEGSVS----MPGFTDEVERPSTVEVRFQDITGAEQTETAEGFH 126
Query: 169 SIVVQHEIDHIDGIMFYDRIN 189
+I +QHEID +DGI + R++
Sbjct: 127 AICIQHEIDQLDGIFWLKRLS 147
>gi|23008036|ref|ZP_00049646.1| hypothetical protein
[Magnetospirillum magnetotacticum]
Length = 145
Score = 48.5 bits (114), Expect = 7e-05
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 21/125 (16%)
Query: 63 EKLGLRGGVGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQD 122
+ LG +GL AP + +R++ + + Q + P Y +P VV S +
Sbjct: 11 DTLGAVSAMGLTAPHIGRPERLVVIRL------QPDEPHATY------VDPVVVWASAER 58
Query: 123 AALSDGEGCLSVDREVPGY---VVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHI 179
A S EG +S +PG V R ARV + Y D GE H + +G + +QHEID +
Sbjct: 59 A--SHPEGSVS----MPGVVEPVERPARVRVRYRDLDGETHEEEAEGLRAACLQHEIDQL 112
Query: 180 DGIMF 184
DGI +
Sbjct: 113 DGIFW 117
>gi|28379384|ref|NP_786276.1| formylmethionine deformylase
[Lactobacillus plantarum WCFS1]
gi|28272223|emb|CAD65131.1| formylmethionine deformylase
[Lactobacillus plantarum WCFS1]
Length = 136
Score = 48.1 bits (113), Expect = 8e-05
Identities = 33/111 (29%), Positives = 55/111 (48%), Gaps = 19/111 (17%)
Query: 71 VGLAAPQLDISKRIIAVLVPNVEDAQGNPPKEAYSLQEVMYNPKVVSHSVQDAALSDGEG 130
VG+AA + ++K+II V Q P A M NPK++ H EG
Sbjct: 42 VGMAANMIGVNKQIIVV--------QLGPFAIA------MINPKIIDHH---GTYETKEG 84
Query: 131 CLSVDREVPGYVVRHARVTIEYFDKTGEKHRLKLKGYNSIVVQHEIDHIDG 181
CLS+ E P R+ ++T++Y D+ + + + + + ++QHE+DH G
Sbjct: 85 CLSLPGERP--TSRYHQITVKYKDQHFKPQQQRFNDFTAQIIQHELDHCAG 133
Database: nr
Posted date: Aug 11, 2003 9:58 AM
Number of letters in database: 479,114,161
Number of sequences in database: 1,487,057
Lambda K H
0.317 0.137 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,884,181
Number of Sequences: 1487057
Number of extensions: 7905175
Number of successful extensions: 18607
Number of sequences better than 1.0e-04: 220
Number of HSP's better than 0.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 167
Number of HSP's that attempted gapping in prelim test: 18327
Number of HSP's gapped (non-prelim): 221
length of query: 204
length of database: 479,114,161
effective HSP length: 118
effective length of query: 86
effective length of database: 303,641,435
effective search space: 26113163410
effective search space used: 26113163410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)