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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs4818704          
refSNP ID: rs4818704
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:111/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss14441642 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs4818704 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss6653504WI_SSAHASNP|NT_011512.7_986978fwd/BC/Tagatttctctaaaggaaggctattcccttgtatttagagctgtgtccaaggaccagcaac02/12/0310/10/03111Genomicunknown
ss14441642WUGSC_SSAHASNP|chr21.NT_011512.9_986978fwd/BC/Tagatttctctaaaggaaggctattcccttgtatttagagctgtgtccaaggaccagcaac11/05/0311/22/03119Genomicunknown
ss91770424BCMHGSC_JDW|JWB-1469317fwd/BC/Tagatttctctaaaggaaggctattcccttgtatttagagctgtgtccaaggaccagcaac02/26/0803/02/08129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs4818704|allelePos=203|totalLen=522|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=129
 ATTGTGACAA CTTTTTTCAT CTGTATTCAG CAGTAGTATA CACCTGTAAT CTCTCTTTTT
 TCATCTCATT TTCCTTCCCC TGTGGCTAGA ATCATGCTCA GAAATAAAAG GAAATTAATG
 CTTTCCCTGG ATTCTGTTAT TATTCAAATT GCTCTCCAGT GGTTCTTTTT CCAGATTTCT
 CTAAAGGAAG GCTATTCCCT tg
 Y
 tatttagagc tgtgtccaag gaccagcaac aacatcacct gagtactcat gagaaatgca
 gactcccata cctgctaaat cagaaTGTGC AGTTTCCAGA AGCTCCTCAA CTAATTCATG
 ATGATCTGAA TGCCCTGTTT TACACTTTAT GTGATTCCAT ATTAGTTTAC CCTAATTGCC
 CTTTTTGGCC TAGCCTCAAT TTCTTCCCTA TTATGTCTCT GAATTTAATA CTACATTATA
 AGCCATAATG TTTCTAATGA ACTTTTAATC AGGTAATACC TTCTCTAATT AATTACTTCT
 CCATACATCA CCCAACACT

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs4818704 maps exactly once on NCBI human chromosome 21
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
13NW_925473.1221635486411plusCalt_assembly_1CeleraCeleraview202
18NW_926940.11408619114086191minusGalt_assembly_1CeleraCeleraview202
21NW_001838706.1151182721768plusTalt_assembly_8HuRefHuRefview202
21NT_011512.1098697814246978plusCref_assemblyreferencereferenceview202

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_011512
dbSNP Blast Analysis
GenBank HTGS Finished:
AP001466.1

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterwith2hit
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .