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GEO accession:
Sample GSM117105
Query DataSets for GSM117105
Status
Public on Sep 30, 2006
Title
NA18973_Nsp_COMM
Sample type
genomic
Source Name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism(s)
Homo sapiens
Characteristics
Gender: Female Cell lot number: 1
Biomaterial provider
Coriell NA18973
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18973
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.023438
13.366
0.053599
0.078261
SNP_A-1780618
AB
0.023438
11.639
0.447807
0.452354
SNP_A-1780632
AA
0.007813
6.967
0.930789
0.877483
SNP_A-1780654
AA
0.007813
25.169
1.000000
1.000000
SNP_A-4192495
AA
0.007813
7.723
0.867925
1.000000
SNP_A-4192498
BB
0.432617
0.724
0.164299
0.351681
SNP_A-1780732
BB
0.015625
17.685
0.000000
0.000289
SNP_A-1780848
AB
0.007813
14.649
0.530820
0.545186
SNP_A-1780985
AB
0.125000
2.037
0.450851
0.292125
SNP_A-1781022
BB
0.062500
8.859
0.000000
0.000000
SNP_A-1781076
BB
0.039063
22.016
0.234597
0.000000
SNP_A-1781249
AA
0.093750
3.468
0.734875
0.857343
SNP_A-1781276
AA
0.132813
7.985
0.942875
0.850082
SNP_A-1781302
BB
0.007813
14.058
0.127109
0.023892
SNP_A-1781510
AB
0.062500
8.676
0.668293
0.813069
SNP_A-4192564
BB
0.007813
6.253
0.119709
0.092275
SNP_A-1781614
AA
0.007813
27.099
0.994284
1.000000
SNP_A-1781633
AB
0.007813
12.565
0.523418
0.372792
SNP_A-1781764
AB
0.007813
15.663
0.489553
0.401058
SNP_A-1781829
AA
0.023438
9.355
0.965541
0.847248
Total number of rows:
262264
Table truncated, full table size
12960 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117105.CEL.gz
44.6 Mb
(ftp)
(http)
CEL
GSM117105.raw.txt.gz
27.2 Mb
(ftp)
(http)
TXT
Raw data provided as supplementary file
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