R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 17 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|7487233|pir||T00745 hypothetical protein T20B5.1 - Arabidopsis thaliana
>gi|2623295|gb|AAB86441.1| (AC002409) hypothetical protein
[Arabidopsis thaliana]
Length = 369
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 369
0 150 300
Plus Strand HSPs:
Score = 620 (218.3 bits), Expect = 1.5e-59, P = 1.5e-59
Identities = 123/160 (76%), Positives = 136/160 (85%), Frame = +2
Query: 14 GLHKGQVRVEHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRL 193
GL++G++RVEHFGLN+ ++INAHDS IAC TLTLDGLLLATAS KGTLIRIFNTMDG+RL
Sbjct: 154 GLNRGEIRVEHFGLNMVQIINAHDSSIACMTLTLDGLLLATASTKGTLIRIFNTMDGTRL 213
Query: 194 QEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLRVRVFGEDSVTQPNAVQGPALF 373
QEVRRGVDRA+I SIALSPNVQWLA SSDKGTVH+FSLRVRV GEDS + N G L
Sbjct: 214 QEVRRGVDRADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVVGEDSYSTEN---GALLT 270
Query: 374 HQNSSSSLDPLISPNTGANPNSSLSFMRGVLPKYFSSEWS 493
QN S+SL L+SP G NP SSLSFMRGVLPKYFSSEWS
Sbjct: 271 QQNYSNSLQGLVSPTIGTNPGSSLSFMRGVLPKYFSSEWS 310
>gi|11288364|pir||T48066 hypothetical protein F26K9.200 - Arabidopsis thaliana
>gi|7362757|emb|CAB83127.1| (AL162651) putative protein
[Arabidopsis thaliana]
Length = 432
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 432
0 150 300
Plus Strand HSPs:
Score = 365 (128.5 bits), Expect = 1.6e-32, P = 1.6e-32
Identities = 89/160 (55%), Positives = 108/160 (67%), Frame = +2
Query: 14 GLHKGQVRVEHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRL 193
GL KGQVR+EH+ TK + AHDS+IACF LT DG LLATAS KGTL+RIFNT+DG+
Sbjct: 225 GLQKGQVRIEHYASKRTKFVMAHDSRIACFALTQDGHLLATASSKGTLVRIFNTVDGTLR 284
Query: 194 QEV--------RRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLRVRVFGEDSVTQPN 349
QE + G DRAEI S+A S N QWLA SSDKGTVHVF L+V +S +Q
Sbjct: 285 QESGTSEDEIGKEGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFGLKV-----NSGSQVK 339
Query: 350 AVQGPALFHQNSSSSLDPLISPNTGANPNSSLSFMRGVLPKYFSSEWS 493
SS + P +P++ P+SSLS + VLP+YFSSEWS
Sbjct: 340 -----------DSSRIAPDATPSS---PSSSLSLFK-VLPRYFSSEWS 372
>gi|9759256|dbj|BAB09691.1| (AB018111) contains similarity to unknown
protein~gene_id:K2A11.2~pir||T00745 [Arabidopsis thaliana]
Length = 374
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 374
0 150 300
Plus Strand HSPs:
Score = 347 (122.2 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 71/128 (55%), Positives = 90/128 (70%), Frame = +2
Query: 14 GLHKGQVRVEHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRL 193
G H GQV+V NV K I AHDS IAC TLTLDG LLATAS KGTLIRIFN +DG+ L
Sbjct: 181 GFHPGQVQVHDLRWNVIKFIKAHDSAIACMTLTLDGSLLATASTKGTLIRIFNAVDGTLL 240
Query: 194 QEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLRVRVFGEDSVTQPNAVQG--PA 367
QE RRGV+RAEI ++A+S N++W+AASS+KGT+HVF LR + D + + ++ P
Sbjct: 241 QEFRRGVERAEIYNVAISSNLKWVAASSEKGTLHVFRLRPDILSFDPASSSSFIRVILPK 300
Query: 368 LFHQNSSS 391
++N S
Sbjct: 301 YLYENERS 308
>gi|11288366|pir||T49045 hypothetical protein T5P19.90 - Arabidopsis thaliana
>gi|7594522|emb|CAB88047.1| (AL163972) putative protein
[Arabidopsis thaliana]
Length = 400
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | 400
0 150 300
Plus Strand HSPs:
Score = 323 (113.7 bits), Expect = 4.4e-28, P = 4.4e-28
Identities = 79/159 (49%), Positives = 102/159 (64%), Frame = +2
Query: 14 GLHKGQVRVEHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRL 193
G+ +G+VRVEHFGLN+ ++INAHDS IAC TLTLDGLLLATAS KGTLIRIFNTMDG+RL
Sbjct: 182 GIRRGEVRVEHFGLNMVQIINAHDSNIACMTLTLDGLLLATASTKGTLIRIFNTMDGTRL 241
Query: 194 QE--VRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLRVRV----FGEDSVTQPN-- 349
QE V+ V++ + + V+ D+ ++ +L V D T
Sbjct: 242 QEDSVKVMVEQTSCHDLFRKTLVR---RGVDRADIYSIALSPNVQWLAVSSDKGTVHIFS 298
Query: 350 ---AVQGPALF---HQNSSSSLDPLISPNTGANPNSSLSFMR 457
V G + H+ SS+SL PL+SP +GANP SSLSF+R
Sbjct: 299 LRVRVIGEDAYSTEHETSSNSLQPLVSPASGANPGSSLSFLR 340
Score = 268 (94.3 bits), Expect = 3.2e-22, P = 3.2e-22
Identities = 72/136 (52%), Positives = 86/136 (63%), Frame = +2
Query: 110 TLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIALSPNVQWLAASSDKGT 289
T+DG L SVK ++ + D R VRRGVDRA+I SIALSPNVQWLA SSDKGT
Sbjct: 235 TMDGTRLQEDSVK-VMVEQTSCHDLFRKTLVRRGVDRADIYSIALSPNVQWLAVSSDKGT 293
Query: 290 VHVFSLRVRVFGEDSV-----TQPNAVQ---GPALFHQNSSSSLDPLISPNTGANP--NS 439
VH+FSLRVRV GED+ T N++Q PA N SSL L ++ A+ +
Sbjct: 294 VHIFSLRVRVIGEDAYSTEHETSSNSLQPLVSPAS-GANPGSSLSFLRVGSSHASVWYLT 352
Query: 440 SLSFMRGVLPKYFSSEWS 493
S + GVLPKYFSSEWS
Sbjct: 353 SSDIVAGVLPKYFSSEWS 370
>gi|9625016 ref|NP_062559.1| hypothetical protein 628 [Homo sapiens]
>gi|11427493 ref|XP_008607.1| hypothetical protein 628 [Homo
sapiens] >gi|3860004|gb|AAC72952.1| (AF091083) unknown [Homo
sapiens]
Length = 286
Frame 2 hits (HSPs): __________________ ____
__________________________________________________
Database sequence: | | | | | | | 286
0 50 100 150 200 250
Plus Strand HSPs:
Score = 184 (64.8 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 40/99 (40%), Positives = 56/99 (56%), Frame = +2
Query: 14 GLHKGQVRVEHFGLNVTKLIN--AHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGS 187
G H G V++ ++ AH+ ++C L L G +ATAS KGTLIRIF+T G
Sbjct: 102 GTHTGHVQLVDLASTEKPPVDIPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGH 161
Query: 188 RLQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFS 304
+QE+RRG A I I + + + SSD GTVH+F+
Sbjct: 162 LIQELRRGSQAANIYCINFNQDASLICVSSDHGTVHIFA 200
Score = 59 (20.8 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 13/22 (59%), Positives = 15/22 (68%), Frame = +2
Query: 428 NPNSSLSFMRGVLPKYFSSEWS 493
N SSL+ LPKYFSS+WS
Sbjct: 207 NKQSSLA-SASFLPKYFSSKWS 227
>gi|5901988 ref|NP_009006.1| JM5 protein [Homo sapiens] >gi|11420020
ref|XP_010204.1| JM5 protein [Homo sapiens]
>gi|3114828|emb|CAA06754.1| (AJ005897) JM5 [Homo sapiens]
>gi|6180172|gb|AAF05825.1|AF196779_2 (AF196779) JM5 protein [Homo
sapiens] >gi|12653389|gb|AAH00464.1|AAH00464 (BC000464) JM5 protein
[Homo sapiens]
Length = 360
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 360
0 150 300
Plus Strand HSPs:
Score = 207 (72.9 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 58/148 (39%), Positives = 82/148 (55%), Frame = +2
Query: 71 INAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIALSP 250
INAH S IAC +L G ++A+AS KGTLIR+F+T +L E+RRG D A + I S
Sbjct: 188 INAHQSDIACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYCINFSH 247
Query: 251 NVQWLAASSDKGTVHVFSLR-VRVFGEDSVTQPNAVQGPALF-HQNSSSSLDPLISP--- 415
+ +L ASSDKGTVH+F+L+ R+ ++ + V GP + + +S SL P
Sbjct: 248 DSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKV-GPMIGQYVDSQWSLASFTVPAES 306
Query: 416 --------NTGANPNSSLSF-MRGVLPKY 475
NT N NS ++ + G KY
Sbjct: 307 ACICAFGRNTSKNVNSVIAICVDGTFHKY 335
>gi|6321662 ref|NP_011739.1| Ygr223cp [Saccharomyces cerevisiae]
>gi|1723745|sp|P50079|YG4Q_YEAST HYPOTHETICAL 51.2 KD PROTEIN IN
PET54-DIE2 INTERGENIC REGION >gi|1362330|pir||S57686 hypothetical
protein YGR223c - yeast (Saccharomyces cerevisiae)
>gi|886915|emb|CAA61171.1| (X87941) ORF 448 [Saccharomyces
cerevisiae] >gi|1323402|emb|CAA97251.1| (Z73008) ORF YGR223c
[Saccharomyces cerevisiae]
Length = 448
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 448
0 150 300
Plus Strand HSPs:
Score = 190 (66.9 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 46/115 (40%), Positives = 69/115 (60%), Frame = +2
Query: 62 TKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIA 241
T +I AH + I L G ++AT SV+GTLIRIF+T +G+ ++E RRGVD+A+I ++
Sbjct: 217 TSIIKAHKNPIKLVRLNRQGTMVATCSVQGTLIRIFSTHNGTLIKEFRRGVDKADIYEMS 276
Query: 242 LSPNVQWLAASSDKGTVHVFSLRVRVFGEDSVTQPNAVQGPALFHQNSSSSLDPL 406
SPN LA S+K T+H+F ++F E + T+ N H ++ S PL
Sbjct: 277 FSPNGSKLAVLSNKQTLHIF----QIF-ETTNTETNTPD-----HSRANGSSHPL 321
>gi|7503172|pir||T31883 hypothetical protein F41E6.13 - Caenorhabditis elegans
>gi|2315459|gb|AAB65961.1| (AF016448) F41E6.13 gene product
[Caenorhabditis elegans]
Length = 412
Frame 2 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | 412
0 150 300
Plus Strand HSPs:
Score = 184 (64.8 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 54/150 (36%), Positives = 79/150 (52%), Frame = +2
Query: 26 GQVRV-EHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEV 202
G V + + L+ NAH+ IAC +G ++ATAS KGT+IR+++ +G RL E
Sbjct: 168 GSVHLFDAINLSSVSTFNAHEGTIACLKFNQEGNMIATASTKGTVIRVYSVPNGHRLFEF 227
Query: 203 RRGVDRA-EINSIALSPNVQWLAASSDKGTVHVFSLRVRVFGEDSVTQPNA-VQGPALFH 376
RRGV R I S+ S + ++L +SS+ TVHVF L + G D+ +P A +G F
Sbjct: 228 RRGVTRCVNIYSLCFSSDSKYLTSSSNTETVHVFKLE-KTEGVDN--KPEASTEGGGWFD 284
Query: 377 Q-NSS-SSLDPLISPNTGANPNSSLSFMRGVLP 469
N + S+ P G + SF LP
Sbjct: 285 AINKTFSAYMPSQVLQVGELMTTERSFATAKLP 317
>gi|7706294 ref|NP_057087.1| CGI-50 protein [Homo sapiens]
>gi|4929569|gb|AAD34045.1|AF151808_1 (AF151808) CGI-50 protein
[Homo sapiens]
Length = 438
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 438
0 150 300
Plus Strand HSPs:
Score = 183 (64.4 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 43/96 (44%), Positives = 59/96 (61%), Frame = +2
Query: 26 GQVRV-EHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEV 202
G+V+V + L +I AHDS +A G LATAS KGT+IR+F+ +G +L E
Sbjct: 177 GEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEF 236
Query: 203 RRGVDRA-EINSIALSPNVQWLAASSDKGTVHVFSL 307
RRGV R I S+A S + +L+ASS+ TVH+F L
Sbjct: 237 RRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFKL 272
>gi|7661580 ref|NP_056425.1| DKFZP434J154 protein [Homo sapiens]
>gi|7512620|pir||T12539 hypothetical protein DKFZp434J154.1 - human
>gi|5262613|emb|CAB45746.1| (AL080155) hypothetical protein [Homo
sapiens]
Length = 454
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | || 454
0 150 300 450
Plus Strand HSPs:
Score = 183 (64.4 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 43/96 (44%), Positives = 59/96 (61%), Frame = +2
Query: 26 GQVRV-EHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEV 202
G+V+V + L +I AHDS +A G LATAS KGT+IR+F+ +G +L E
Sbjct: 182 GEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEF 241
Query: 203 RRGVDRA-EINSIALSPNVQWLAASSDKGTVHVFSL 307
RRGV R I S+A S + +L+ASS+ TVH+F L
Sbjct: 242 RRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFKL 277
>gi|7295146|gb|AAF50471.1| (AE003556) CG7986 gene product [alt 1] [Drosophila
melanogaster] >gi|7295147|gb|AAF50472.1| (AE003556) CG7986 gene
product [alt 2] [Drosophila melanogaster]
Length = 442
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 442
0 150 300
Plus Strand HSPs:
Score = 181 (63.7 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 39/96 (40%), Positives = 63/96 (65%), Frame = +2
Query: 26 GQVRV-EHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEV 202
G+V++ + L+ +I AHD+ +A + G +ATAS +GT+IR+F++ DGSRL E+
Sbjct: 163 GEVQIFDAINLHAKTMIPAHDTPLAALAFSPSGTEIATASERGTVIRVFSSQDGSRLFEL 222
Query: 203 RRGVDRA-EINSIALSPNVQWLAASSDKGTVHVFSL 307
RRG+ R I S++ S ++L +SS+ TVH+F L
Sbjct: 223 RRGLKRCVSIVSLSFSTCAEYLVSSSNTETVHIFRL 258
>gi|7298770|gb|AAF53981.1| (AE003669) CG8678 gene product [Drosophila
melanogaster]
Length = 466
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 466
0 150 300 450
Plus Strand HSPs:
Score = 180 (63.4 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 51/153 (33%), Positives = 78/153 (50%), Frame = +2
Query: 26 GQVRVEHFG-LNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEV 202
G++R+ + L I AHD+ ++ + G LLATAS +GT+IR+F +G R+QE
Sbjct: 144 GELRIFNASKLRTGMTIRAHDTSLSALAFSPSGALLATASERGTVIRVFCVKNGQRVQEF 203
Query: 203 RRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLRVRVFGEDSVTQPNAVQGPALFHQN 382
RRGV I S+ S + +L ASS+ TVHVF + R ++V + A+ A +N
Sbjct: 204 RRGVSCVRIASLVFSASGDFLCASSNTETVHVFKIDTRAV--ETV-ELKAIADVAAKSEN 260
Query: 383 SSSSLDPLISPNTGANPNSSLSFMRGVLPKYFSS 484
S+ + P +S G+ K SS
Sbjct: 261 SAKEAVASTAAEESCRPVASWG---GMFSKAVSS 291
>gi|7299116|gb|AAF54315.1| (AE003681) CG11975 gene product [Drosophila
melanogaster]
Length = 340
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 340
0 150 300
Plus Strand HSPs:
Score = 175 (61.6 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 36/77 (46%), Positives = 49/77 (63%), Frame = +2
Query: 77 AHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIALSPNV 256
AH++ I+C L L G LATA KGTLIRIF+T G ++ E+RRG + A I I +
Sbjct: 183 AHEAGISCIALNLQGTRLATAGEKGTLIRIFDTESGKKVSELRRGSNHANIFCINFNHQS 242
Query: 257 QWLAASSDKGTVHVFSL 307
+ +SD GT+HVF+L
Sbjct: 243 TMVVVASDHGTIHVFNL 259
>gi|6321133 ref|NP_011211.1| Yfr021wp [Saccharomyces cerevisiae]
>gi|1176002|sp|P43601|YFJ1_YEAST HYPOTHETICAL 55.1 KDA TRP-ASP
REPEATS CONTAINING PROTEIN IN FAB1-PES4 INTERGENIC REGION
>gi|1084743|pir||S56276 probable membrane protein YFR021w - yeast
(Saccharomyces cerevisiae) >gi|836776|dbj|BAA09260.1| (D50617)
YFR021W [Saccharomyces cerevisiae]
Length = 500
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | 500
0 150 300 450
Plus Strand HSPs:
Score = 178 (62.7 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 36/85 (42%), Positives = 52/85 (61%), Frame = +2
Query: 53 LNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEIN 232
L T +I AH +IA ++ DG L+ATAS KGT+IR+F+ G ++ + RRG I
Sbjct: 235 LQPTMVIEAHKGEIAAMAISFDGTLMATASDKGTIIRVFDIETGDKIYQFRRGTYATRIY 294
Query: 233 SIALSPNVQWLAASSDKGTVHVFSL 307
SI+ S + Q+LA + TVH+F L
Sbjct: 295 SISFSEDSQYLAVTGSSKTVHIFKL 319
>gi|8347062|emb|CAB93848.1| (AL358272) conserved hypothetical protein
[Schizosaccharomyces pombe]
Length = 364
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 364
0 150 300
Plus Strand HSPs:
Score = 174 (61.3 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 34/82 (41%), Positives = 53/82 (64%), Frame = +2
Query: 62 TKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIA 241
T ++ AHDS+I+C ++ G +A++S GTLIRI+N+ G ++ E RRG + +A
Sbjct: 168 TSIVPAHDSEISCLGISKTGSKIASSSTNGTLIRIWNSETGEKICEFRRGYQHTAVCQLA 227
Query: 242 LSPNVQWLAASSDKGTVHVFSL 307
SP+ LA +S K T+H+FSL
Sbjct: 228 FSPDELLLACASKKETLHIFSL 249
>gi|7509665|pir||T26730 hypothetical protein Y39A1A.1 - Caenorhabditis elegans
>gi|3880846|emb|CAA21019.1| (AL031633) cDNA EST EMBL:T00867 comes
from this gene [Caenorhabditis elegans]
Length = 455
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | || 455
0 150 300 450
Plus Strand HSPs:
Score = 176 (62.0 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 40/105 (38%), Positives = 58/105 (55%), Frame = +2
Query: 14 GLHKGQVRVEHFGLNVTK------LINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNT 175
G G V++ H + +I AH + IA L G L+AT S KGT+IR+F+
Sbjct: 259 GFKTGSVQIMHLNALTARESKSPIVIEAHLTDIAQVALNCQGTLVATGSTKGTVIRVFDA 318
Query: 176 MDGSRLQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLR 310
L E+RRG +A + +A SP +LA +SDKGT+H+F +R
Sbjct: 319 RTKGPLYELRRGTVQAHLQCMAFSPCSSYLAVASDKGTLHMFGIR 363
>gi|8922208 ref|NP_060453.1| hypothetical protein FLJ10055 [Homo sapiens]
>gi|7021882|dbj|BAA91423.1| (AK000917) unnamed protein product
[Homo sapiens]
Length = 441
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 441
0 150 300
Plus Strand HSPs:
Score = 170 (59.8 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Frame = +2
Query: 71 INAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDR-AEINSIALS 247
I AH+ +A T G LA+AS KGT+IR+F+ DG +L E RRG+ R I+S+ S
Sbjct: 177 IAAHEGTLAAITFNASGSKLASASEKGTVIRVFSVPDGQKLYEFRRGMKRYVTISSLVFS 236
Query: 248 PNVQWLAASSDKGTVHVFSL 307
+ Q+L ASS+ TVH+F L
Sbjct: 237 MDSQFLCASSNTETVHIFKL 256
>gi|12740183 ref|XP_008266.2| hypothetical protein FLJ10055 [Homo sapiens]
Length = 442
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 442
0 150 300
Plus Strand HSPs:
Score = 170 (59.8 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Frame = +2
Query: 71 INAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDR-AEINSIALS 247
I AH+ +A T G LA+AS KGT+IR+F+ DG +L E RRG+ R I+S+ S
Sbjct: 178 IAAHEGTLAAITFNASGSKLASASEKGTVIRVFSVPDGQKLYEFRRGMKRYVTISSLVFS 237
Query: 248 PNVQWLAASSDKGTVHVFSL 307
+ Q+L ASS+ TVH+F L
Sbjct: 238 MDSQFLCASSNTETVHIFKL 257
>gi|12043551|emb|CAC19764.1| (AL512496) WD domain protein; conserved
hypothetical protein; highly similar to S. cerevisiae YFR021W
[Schizosaccharomyces pombe]
Length = 373
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 373
0 150 300
Plus Strand HSPs:
Score = 166 (58.4 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 37/84 (44%), Positives = 48/84 (57%), Frame = +2
Query: 59 VTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSI 238
+TK I AH +AC DG +LATAS G +IR+F G RL + RRG A+I SI
Sbjct: 181 ITK-IEAHKDSLACLAFNSDGTMLATASDNGRIIRVFAIPSGQRLYQFRRGSLPAQIYSI 239
Query: 239 ALSPNVQWLAASSDKGTVHVFSLR 310
A P+ L +S TVH+F L+
Sbjct: 240 AFHPDSSLLTVTSSTQTVHIFRLK 263
>gi|7708614|emb|CAB90161.1| (AL355013) hypothetical protein
[Schizosaccharomyces pombe]
Length = 335
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 335
0 150 300
Plus Strand HSPs:
Score = 161 (56.7 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 35/80 (43%), Positives = 48/80 (60%), Frame = +2
Query: 68 LINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIALS 247
LI+ H S + G L+ATAS KGT+IR+ T DG + E+RRG A I SI+
Sbjct: 162 LIHCHSSAVQVVDFHPRGHLIATASAKGTVIRVITTSDGELVTELRRGYIPASIVSISFH 221
Query: 248 PNVQWLAASSDKGTVHVFSL 307
P +LA +S+ GT+HVF +
Sbjct: 222 PVEPFLACASENGTIHVFKI 241
>gi|11359433|pir||T51055 hypothetical protein B12F1.70 [imported] - Neurospora
crassa >gi|9368558|emb|CAB98219.1| (AL390091) conserved
hypothetical protein [Neurospora crassa]
Length = 421
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 421
0 150 300
Plus Strand HSPs:
Score = 157 (55.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 46/139 (33%), Positives = 72/139 (51%), Frame = +2
Query: 23 KGQVRV-EHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQE 199
+G V V + L ++ AH S + L DG +LATAS GT+IR+F+ G +L +
Sbjct: 169 RGDVLVYDALNLKTVNVVEAHKSPLCAIALNHDGSMLATASETGTIIRVFSLPQGQKLFQ 228
Query: 200 VRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLRVRVFGEDSVTQPNAVQGPALFHQ 379
RRG I S++ + + L SS TVH+F R+ +++ P GPA +
Sbjct: 229 FRRGTVPTSIYSMSFNLSSTLLCVSSTSDTVHIF--RLLNTQKNANALPGG--GPAQGTR 284
Query: 380 NSSSSL-DPLISPNTGANPNS 439
+ S + DP SP+ G P++
Sbjct: 285 SRSFDVNDP--SPHKGEVPSA 303
>gi|7673610|gb|AAF66949.1|AF229635_1 (AF229635) DXImx38e protein [Mus musculus]
Length = 346
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | 346
0 150 300
Plus Strand HSPs:
Score = 151 (53.2 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 51/135 (37%), Positives = 74/135 (54%), Frame = +2
Query: 71 INAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIALSP 250
INAH S +AC +L G ++A+AS KGTLIR+F+T +L E+RRG D A +
Sbjct: 188 INAHQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATLYC----- 242
Query: 251 NVQWLAASSDKGTVHVFSLR-VRVFGEDSVTQPNAVQGPALF-HQNSSSSLDPLISP--- 415
DKGTVH+F+L+ R+ ++ + V GP + + +S SL P
Sbjct: 243 ---------DKGTVHIFALKDTRLNRRSALARVGKV-GPMIGQYVDSQWSLASFTVPAES 292
Query: 416 --------NTGANPNSSLSF-MRGVLPKY 475
NT N NS ++ + G KY
Sbjct: 293 ACICAFGRNTSKNVNSVIAICVDGTFHKY 321
>gi|7269952|emb|CAB79769.1| (AL161577) putative protein [Arabidopsis thaliana]
Length = 285
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | | | 285
0 50 100 150 200 250
Plus Strand HSPs:
Score = 146 (51.4 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 46/129 (35%), Positives = 71/129 (55%), Frame = +2
Query: 11 AGLHKGQVRVEH-FGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGS 187
A KG V V + L I+AH S +A L+ +G+ +AT S +GTLIR+ + +
Sbjct: 89 ASTTKGSVLVYNVMDLQSHSEIDAHRSPLAAIALSSNGMYIATGSEQGTLIRVHLVSEAT 148
Query: 188 RLQEVRRGVDRAEINSIALSPNVQW---LAASSDKGTVHVFSLRVRVFGEDSVTQPNAVQ 358
+ RRG + I S++ P+ Q L A+S G++H FSL + + SV+ +A+
Sbjct: 149 KSYSFRRGTYPSTIYSLSFGPSTQLPDILIATSSSGSIHAFSLSLAI--NQSVS--DALD 204
Query: 359 GPALFH--QNSSSS 394
PA H QN+ SS
Sbjct: 205 -PAHHHVLQNAVSS 217
>gi|6325157 ref|NP_015225.1| Ypl100wp [Saccharomyces cerevisiae]
>gi|2132187|pir||S61966 hypothetical protein YPL100w - yeast
(Saccharomyces cerevisiae) >gi|1151226|gb|AAB68199.1| (U43281)
Lpg8p [Saccharomyces cerevisiae]
Length = 496
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 496
0 150 300 450
Plus Strand HSPs:
Score = 139 (48.9 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 50/147 (34%), Positives = 75/147 (51%), Frame = +2
Query: 53 LNVTKL--INA-HDSQIACFTLTLDGLLLATASVKGTLIRIFNT-MDG----SR--LQEV 202
LNVT + +N+ H +AC ++ DG LLATAS KGT+IR+F+T +D SR +E
Sbjct: 283 LNVTPVNYLNSVHKGNVACLAVSHDGKLLATASDKGTIIRVFHTGVDSDYMSSRSLFKEF 342
Query: 203 RRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLRVRVFGEDSVTQPNAVQGPALFHQN 382
RRG + +A ++ + D T+H+F L +S+ N+ G H N
Sbjct: 343 RRGTRLCNLYQLAFDKSMTMIGCVGDTDTIHLFKLDD---ASNSLPGDNSSNG----HWN 395
Query: 383 SSSS-LDPLISPNTGANPNSSLSFMRGVLPKYFSSE 487
L +P+ G LS R + YFS +
Sbjct: 396 EEEYILASNSNPSMGTPKEIPLSKPR--IANYFSKK 429
>gi|6226620|sp|Q94775|GBLP_TRYBB GUANINE NUCLEOTIDE-BINDING PROTEIN BETA
SUBUNIT-LIKE PROTEIN (ACTIVATED PROTEIN KINASE C RECEPTOR HOMOLOG)
(TRACK) >gi|2952301|gb|AAC05497.1| (AF049902) activated protein
kinase C receptor homolog TRACK [Trypanosoma brucei rhodesiense]
>gi|3776549|gb|AAC64858.1| (U72205) activated protein kinase C
receptor homolog [Trypanosoma brucei]
Length = 318
Frame 2 hits (HSPs): _____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 318
0 50 100 150 200 250 300
__________________
Annotated Domains:
BLOCKS BL00678: Trp-Asp (WD) repeat proteins pr 84..94
Entrez Repetitive region: WD1. 11..44
Entrez Repetitive region: WD2. 65..95
Entrez Repetitive region: WD3. 107..137
Entrez Repetitive region: WD4. 150..182
Entrez Repetitive region: WD5. 194..224
Entrez Repetitive region: WD6. 235..264
Entrez Repetitive region: WD7. 282..315
PFAM WD40: WD domain, G-beta repeat 3..44
PFAM WD40: WD domain, G-beta repeat 57..95
PFAM WD40: WD domain, G-beta repeat 99..137
PFAM WD40: WD domain, G-beta repeat 140..175
PFAM WD40: WD domain, G-beta repeat 185..223
PFAM WD40: WD domain, G-beta repeat 227..263
PFAM WD40: WD domain, G-beta repeat 273..311
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 82..96
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 124..138
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 210..224
PRODOM PD003109: GBLP(16) 5..60
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 63..95
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 105..137
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 151..182
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 192..224
PRODOM PD002398: GBLP(22) 228..267
PRODOM PD002496: GBLP(22) 270..315
PROSITE G_BETA_REPEATS: Beta-transducin family T 124..138
PROSITE G_BETA_REPEATS: Beta-transducin family T 169..183
PROSITE G_BETA_REPEATS: Beta-transducin family T 211..225
PROSITE G_BETA_REPEATS: Beta-transducin family T 82..96
__________________
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.0015, P = 0.0015
Identities = 29/86 (33%), Positives = 46/86 (53%), Frame = +2
Query: 50 GLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEI 229
G VT L H + + T++ DG L A++ G + R+++ G L E+ G A I
Sbjct: 186 GRLVTDL-KGHTNYVTSVTVSPDGSLCASSDKDG-VARLWDLTKGEALSEMAAG---API 240
Query: 230 NSIALSPNVQWLAASSDKGTVHVFSL 307
N I SPN W+ A+++KG + +F L
Sbjct: 241 NQICFSPNRYWMCAATEKG-IRIFDL 265
>gi|9280639|gb|AAF86508.1|AC002560_1 (AC002560) F21B7.1 [Arabidopsis thaliana]
Length = 877
Frame 2 hits (HSPs): ____ ______
__________________________________________________
Database sequence: | | | | | | | 877
0 150 300 450 600 750
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.0076, Sum P(2) = 0.0075
Identities = 29/100 (29%), Positives = 43/100 (43%), Frame = +2
Query: 191 LQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLRVRVFGEDSVTQPNAVQGPAL 370
L ++ RG+ A + I S QW+A S KGT H+F L G D+ QP + P
Sbjct: 319 LFKLHRGITSAIVQDICFSQQSQWVAIISSKGTCHIFVLNSS--GSDAAFQPCEGEEPTR 376
Query: 371 FHQNSSS--SLDPLISPNTGANPNSSLSFMRGVLPKYFSSEW 490
+S L S +P ++++ KY S W
Sbjct: 377 LPASSLPWWFTQSLSSNQQSLSPPTAVALSVVSRIKYSSFGW 418
Score = 62 (21.8 bits), Expect = 0.0076, Sum P(2) = 0.0075
Identities = 20/52 (38%), Positives = 25/52 (48%), Frame = +2
Query: 26 GQVRVEHF--GLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTM 178
G V V+ G V++ AH S I+ G LL TASV G I +F M
Sbjct: 246 GMVAVKDLVSGALVSQF-KAHTSPISALCFDPSGTLLVTASVCGNNINVFQIM 297
>gi|3859572|gb|AAC72849.1| (AF100286) activated protein kinase C receptor
homolog [Trypanosoma congolense]
Length = 318
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | | 318
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.010, P = 0.010
Identities = 28/86 (32%), Positives = 45/86 (52%), Frame = +2
Query: 50 GLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEI 229
G VT L H + + T++ DG L A++ G + R+++ G L E+ G A I
Sbjct: 186 GRLVTDL-KGHTNYVTSVTVSPDGSLCASSDKDG-VARLWDLTKGESLSEMAAG---API 240
Query: 230 NSIALSPNVQWLAASSDKGTVHVFSL 307
N I SPN W+ A+++K + +F L
Sbjct: 241 NQICFSPNRYWMCAATEK-VIRIFDL 265
>gi|3025125|sp|P74598|YE91_SYNY3 HYPOTHETICAL WD-REPEAT PROTEIN SLL1491
>gi|7446135|pir||S76794 hypothetical protein - Synechocystis sp.
(strain PCC 6803) >gi|1653795|dbj|BAA18706.1| (D90916) beta
transducin-like protein [Synechocystis sp.]
Length = 348
Frame 2 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 348
0 150 300
__________________
Annotated Domains:
BLOCKS BL00678: Trp-Asp (WD) repeat proteins pr 331..341
PFAM WD40: WD domain, G-beta repeat 51..89
PFAM WD40: WD domain, G-beta repeat 134..173
PFAM WD40: WD domain, G-beta repeat 177..217
PFAM WD40: WD domain, G-beta repeat 221..258
PFAM WD40: WD domain, G-beta repeat 262..300
PFAM WD40: WD domain, G-beta repeat 304..342
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 160..174
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 204..218
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 329..343
PRODOM PD084419: YE91_SYNY3 1..137
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 139..171
PRODOM PD064243: YE91_SYNY3 173..307
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 309..342
PROSITE G_BETA_REPEATS: Beta-transducin family T 204..218
PROSITE G_BETA_REPEATS: Beta-transducin family T 329..343
__________________
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.012, P = 0.012
Identities = 33/94 (35%), Positives = 52/94 (55%), Frame = +2
Query: 26 GQVR-VEHFGLNVTKLINAHDSQ---IACFTLTLDGLLLATASVKGTLIRIFNTMDGSRL 193
GQ R ++ + N +L+ Q I +T DG L A V+ ++ +N D L
Sbjct: 208 GQDRTIKFWDANTFELLGTSPQQPGFINGLAVTPDGRKLVGA-VRN-FVKAWNLADAKEL 265
Query: 194 QEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSL 307
VR G EIN+IA+SPN +W+A ++ +GT+ +F L
Sbjct: 266 FSVR-GPS-LEINTIAVSPNNRWVATANKEGTIMIFDL 301
>gi|3859574|gb|AAC72850.1| (AF100287) activated protein kinase C receptor
homolog [Trypanosoma vivax]
Length = 317
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | | 317
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.033, P = 0.032
Identities = 25/83 (30%), Positives = 43/83 (51%), Frame = +2
Query: 59 VTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSI 238
V + H + + T++ DG L A++ G + R+++ G L E+ G A IN I
Sbjct: 189 VVSELKGHTNYVTSVTVSPDGSLCASSDCDG-VARLWDLAKGDSLFEMSAG---APINQI 244
Query: 239 ALSPNVQWLAASSDKGTVHVFSL 307
SPN W+ A++D+ + +F L
Sbjct: 245 CFSPNRYWMCAATDE-CIRIFDL 266
>gi|3776567|gb|AAC64884.1| (AC005388) Strong similarity to F21B7.33 gi|2809264
from A. thaliana BAC gb|AC002560. EST gb|N65119 comes from this
gene. [Arabidopsis thaliana]
Length = 942
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | | 942
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 0.095, Sum P(2) = 0.090
Identities = 22/60 (36%), Positives = 31/60 (51%), Frame = +2
Query: 191 LQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLRVRVFGEDSVTQPNAVQ--GP 364
L ++ RG+ A I I S QW+A S K T H++ L FG ++V + Q GP
Sbjct: 434 LYKLHRGMTSAVIQDICFSSYSQWIAIVSSKSTCHIYVLSP--FGGENVLEIRNSQFDGP 491
Query: 365 AL 370
L
Sbjct: 492 TL 493
Score = 64 (22.5 bits), Expect = 0.095, Sum P(2) = 0.090
Identities = 18/52 (34%), Positives = 23/52 (44%), Frame = +2
Query: 26 GQVRVEHFGLN-VTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTM 178
G V V+ F + AH S I+ G LL TAS+ G I +F M
Sbjct: 361 GTVIVKDFESRAIIAQFRAHTSPISALCFDPSGTLLVTASIHGNNINVFRIM 412
>gi|6323763 ref|NP_013834.1| G-beta like protein; Asc1p [Saccharomyces
cerevisiae] >gi|1730231|sp|P38011|GBLP_YEAST GUANINE
NUCLEOTIDE-BINDING PROTEIN BETA SUBUNIT-LIKE PROTEIN
>gi|1084938|pir||S54578 hypothetical protein YMR116c - yeast
(Saccharomyces cerevisiae) >gi|817876|emb|CAA89754.1| (Z49702)
unknown [Saccharomyces cerevisiae]
Length = 319
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | | 319
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.14, P = 0.13
Identities = 28/84 (33%), Positives = 45/84 (53%), Frame = +2
Query: 80 HDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIALSPNVQ 259
H+S I T + DG L+A+A G ++ ++N + + D E+ S+A SPN
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIM-LWN-LAAKKAMYTLSAQD--EVFSLAFSPNRY 250
Query: 260 WLAASSDKGTVHVFSLRVRVFGED 331
WLAA++ G + VFSL + +D
Sbjct: 251 WLAAATATG-IKVFSLDPQYLVDD 273
>gi|10176800|dbj|BAB09939.1| (AB022214) contains similarity to unknown
protein~gb|AAC64884.1~gene_id:K5F14.9 [Arabidopsis thaliana]
Length = 763
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | || 763
0 150 300 450 600 750
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.20, P = 0.18
Identities = 32/106 (30%), Positives = 46/106 (43%), Frame = +2
Query: 56 NVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFN---TMDGSR---------LQE 199
+V AH S I+ GLLL TAS++G I +F T+ SR L
Sbjct: 338 SVITQFKAHKSPISALCFDQSGLLLVTASIQGHNINVFRIMPTISTSRAVKTTTFAHLFR 397
Query: 200 VRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLRVRVFGEDSV 337
++RG A I I S + + S +GT H+F + G+ V
Sbjct: 398 LQRGFTNAVIQDICFSKDSNLIVVGSSRGTSHLFEINPEKEGDAPV 443
>gi|3023853|sp|Q10281|GBLP_SCHPO GUANINE NUCLEOTIDE-BINDING PROTEIN BETA
SUBUNIT-LIKE PROTEIN >gi|7490617|pir||T39022 guanine
nucleotide-binding protein beta subunit-like protein - fission
yeast (Schizosaccharomyces pombe) >gi|11346446|pir||T43299 probable
GTP-binding regulatory protein beta chain - fission yeast
(Schizosaccharomyces pombe) >gi|2440194|emb|CAB11079.1| (Z98531)
guanine nucleotide-binding protein beta subunit-like protein
[Schizosaccharomyces pombe]
Length = 314
Frame 2 hits (HSPs): ______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 314
0 50 100 150 200 250 300
__________________
Annotated Domains:
BLOCKS BL00678: Trp-Asp (WD) repeat proteins pr 122..132
Entrez Repetitive region: WD1. 13..44
Entrez Repetitive region: WD2. 61..91
Entrez Repetitive region: WD3. 103..133
Entrez Repetitive region: WD4. 146..178
Entrez Repetitive region: WD5. 190..220
Entrez Repetitive region: WD6. 231..260
Entrez Repetitive region: WD7. 281..311
PFAM WD40: WD domain, G-beta repeat 5..44
PFAM WD40: WD domain, G-beta repeat 53..91
PFAM WD40: WD domain, G-beta repeat 95..133
PFAM WD40: WD domain, G-beta repeat 138..178
PFAM WD40: WD domain, G-beta repeat 182..220
PFAM WD40: WD domain, G-beta repeat 224..260
PFAM WD40: WD domain, G-beta repeat 274..311
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 78..92
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 120..134
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 207..221
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 10..44
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 59..91
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 101..133
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 146..178
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 190..220
PRODOM PD002398: GBLP(22) 226..265
PRODOM PD002496: GBLP(22) 267..312
PROSITE G_BETA_REPEATS: Beta-transducin family T 120..134
PROSITE G_BETA_REPEATS: Beta-transducin family T 207..221
PROSITE G_BETA_REPEATS: Beta-transducin family T 31..45
PROSITE G_BETA_REPEATS: Beta-transducin family T 78..92
__________________
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.32, P = 0.28
Identities = 24/93 (25%), Positives = 47/93 (50%), Frame = +2
Query: 38 VEHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVD 217
+E F L + H ++ T++ DG L A+ GTL+ +++ + + L +
Sbjct: 179 LETFSLRTSHY--GHTGYVSAVTISPDGSLCASGGRDGTLM-LWDLNESTHLYSLEA--- 232
Query: 218 RAEINSIALSPNVQWLAASSDKGTVHVFSLRVR 316
+A IN++ SPN WL A++ ++ +F L +
Sbjct: 233 KANINALVFSPNRYWLCAATGS-SIRIFDLETQ 264
>gi|11992988|gb|AAA56865.2| (L37885) guanine nucleotide regulatory protein
[Schizosaccharomyces pombe]
Length = 314
Frame 2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | | 314
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.32, P = 0.28
Identities = 24/93 (25%), Positives = 47/93 (50%), Frame = +2
Query: 38 VEHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVD 217
+E F L + H ++ T++ DG L A+ GTL+ +++ + + L +
Sbjct: 179 LETFSLRTSHY--GHTGYVSAVTISPDGSLCASGGRDGTLM-LWDLNESTHLYSLEA--- 232
Query: 218 RAEINSIALSPNVQWLAASSDKGTVHVFSLRVR 316
+A IN++ SPN WL A++ ++ +F L +
Sbjct: 233 KANINALVFSPNRYWLCAATGS-SIRIFDLETQ 264
>gi|10434795|dbj|BAB14380.1| (AK023054) unnamed protein product [Homo sapiens]
Length = 684
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | 684
0 150 300 450 600
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.42, P = 0.34
Identities = 23/86 (26%), Positives = 38/86 (44%), Frame = +2
Query: 77 AHDSQIACFTLTLDGLLLATASVKGTLIRIFNTM----DGSR-----LQEVRRGVDRAEI 229
AH+ + C G+LL T G +F + S+ L + RG A++
Sbjct: 120 AHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKV 179
Query: 230 NSIALSPNVQWLAASSDKGTVHVFSL 307
I S + +W+ S+ +GT HVF +
Sbjct: 180 QDICFSHDCRWVVVSTLRGTSHVFPI 205
>gi|7490155|pir||T40283 beta-transducin - fission yeast (Schizosaccharomyces
pombe) >gi|2950453|emb|CAA17803.1| (AL022071) WD repeat protein
[Schizosaccharomyces pombe]
Length = 380
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 380
0 150 300
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.44, P = 0.35
Identities = 31/130 (23%), Positives = 67/130 (51%), Frame = +2
Query: 65 KLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIAL 244
+++ AH I +++ DG L ATAS G + RI++ + G L+ + ++ ++++
Sbjct: 174 RMLPAHSEPIISVSISADGTLCATASYDG-MARIWDVLSGQCLKTLVEPIN-VPLSNLQF 231
Query: 245 SPNVQWLAASSDKGTVHVFSLR----VRVFGEDSVTQPNAVQGPALFHQNSSSSLDPLIS 412
+ N ++L S+ + ++ R VR+F + V ++ +N + + L
Sbjct: 232 TENRKYLLVSNLNSQIRLWDYRRNRVVRIF-DSHVNTRYSMSWDCYSSKNIPKNTEAL-- 288
Query: 413 PNTGAN-PNSSLSFM 454
PN ++ P+ + SFM
Sbjct: 289 PNNDSSYPDDAESFM 303
>gi|3024893|sp|P74442|Y143_SYNY3 HYPOTHETICAL WD-REPEAT PROTEIN SLR0143
>gi|7446131|pir||S76414 beta transducin-like protein, 132K -
Synechocystis sp. (strain PCC 6803) >gi|1653631|dbj|BAA18543.1|
(D90915) beta transducin-like protein [Synechocystis sp.]
Length = 1191
Frame 2 hits (HSPs): _____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | | 1191
0 150 300 450 600 750 900 1050
__________________
Annotated Domains:
BLOCKS BL00678: Trp-Asp (WD) repeat proteins pr 618..628
Entrez Repetitive region: WD1. 558..588
Entrez Repetitive region: WD2. 599..629
Entrez Repetitive region: WD3. 640..670
Entrez Repetitive region: WD4. 682..712
Entrez Repetitive region: WD5. 723..753
Entrez Repetitive region: WD6. 764..794
Entrez Repetitive region: WD7. 805..835
Entrez Repetitive region: WD8. 995..1025
Entrez Repetitive region: WD9. 1036..1066
Entrez Repetitive region: WD10. 1077..1107
Entrez Repetitive region: WD11. 1118..1148
PFAM WD40: WD domain, G-beta repeat 550..588
PFAM WD40: WD domain, G-beta repeat 591..629
PFAM WD40: WD domain, G-beta repeat 632..670
PFAM WD40: WD domain, G-beta repeat 674..712
PFAM WD40: WD domain, G-beta repeat 715..753
PFAM WD40: WD domain, G-beta repeat 756..794
PFAM WD40: WD domain, G-beta repeat 797..835
PFAM WD40: WD domain, G-beta repeat 987..1025
PFAM WD40: WD domain, G-beta repeat 1028..1066
PFAM WD40: WD domain, G-beta repeat 1069..1107
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 575..589
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 657..671
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 699..713
PRODOM PD042861: P73552(1) Y143(1) 17..369
PRODOM PD141840: Y143_SYNY3 371..554
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 556..586
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 597..629
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 637..668
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 682..712
PRODOM PD000061: PEX7(6) WD66(5) CORO(5) 731..795
PRODOM PD036333: Q50236(1) Y143(1) 799..1033
PRODOM PD000061: PEX7(6) WD66(5) CORO(5) 1035..1106
PRODOM PD029268: Q50237(1) Y143(1) 1108..1190
__________________
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.45, P = 0.36
Identities = 29/110 (26%), Positives = 59/110 (53%), Frame = +2
Query: 11 AGLHKGQVRVEHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSR 190
AG +G + + +F + + I AH ++ + +G L +A +GT +I++ ++G
Sbjct: 1014 AGDEQGNLTLWNFDGTLIRSIVAHGDRLNQLQYSPNGKYLLSAGREGTA-KIWS-VEGQL 1071
Query: 191 LQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLRVRVFGEDSVT 340
L ++ D I+ IA+SP+ QW+A ++ G V ++ + + GE + T
Sbjct: 1072 LHTLKS--DPLPIDQIAISPDSQWIATAASDGMVRLWDQQGNLRGEFTST 1119
>gi|10438048|dbj|BAB15156.1| (AK025510) unnamed protein product [Homo sapiens]
Length = 928
Frame 2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | 928
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.60, P = 0.45
Identities = 23/86 (26%), Positives = 38/86 (44%), Frame = +2
Query: 77 AHDSQIACFTLTLDGLLLATASVKGTLIRIFNTM----DGSR-----LQEVRRGVDRAEI 229
AH+ + C G+LL T G +F + S+ L + RG A++
Sbjct: 349 AHEKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKV 408
Query: 230 NSIALSPNVQWLAASSDKGTVHVFSL 307
I S + +W+ S+ +GT HVF +
Sbjct: 409 QDICFSHDCRWVVVSTLRGTSHVFPI 434
>gi|11139244|gb|AAG31640.1|AF309554_1 (AF309554) meiotic recombination protein
REC14 [Mus musculus]
Length = 305
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | || 305
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.72, P = 0.51
Identities = 29/99 (29%), Positives = 50/99 (50%), Frame = +2
Query: 14 GLHKGQVRVEHFGLNVTKLINAHDSQ---IACFTLTLDGLLLATASVKGTLIRIFNTMDG 184
G H G+V + FG+ K + D++ I + DG LA+ ++ G +I IF+ G
Sbjct: 124 GTHMGKVNI--FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG-IINIFDIATG 180
Query: 185 SRLQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLR 310
L + G I S+ SP+ Q L +SD G + ++ ++
Sbjct: 181 KLLHTLE-G-HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 220
>gi|10437122|dbj|BAB14986.1| (AK024754) unnamed protein product [Homo sapiens]
>gi|11139242|gb|AAG31639.1|AF309553_1 (AF309553) meiotic
recombination protein REC14 [Homo sapiens]
Length = 305
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | || 305
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.94, P = 0.61
Identities = 29/99 (29%), Positives = 50/99 (50%), Frame = +2
Query: 14 GLHKGQVRVEHFGLNVTKLINAHDSQ---IACFTLTLDGLLLATASVKGTLIRIFNTMDG 184
G H G+V + FG+ K + D++ I + DG LA+ ++ G +I IF+ G
Sbjct: 124 GTHVGKVNI--FGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDG-IINIFDIATG 180
Query: 185 SRLQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSLR 310
L + G I S+ SP+ Q L +SD G + ++ ++
Sbjct: 181 KLLHTLE-G-HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 220
>gi|10764839|gb|AAG22830.1|AF306867_1 (AF306867) unknown [Aedes triseriatus]
Length = 177
Frame 2 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | 177
0 50 100 150
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 1.3, P = 0.72
Identities = 26/99 (26%), Positives = 51/99 (51%), Frame = +2
Query: 11 AGLHKGQVRVEHFGLNVTKLINAHDSQIACFTLTL----DGLLLATASVKGTLIRIFNTM 178
+G H+G++ + + + K D Q FTL++ DG +A+ + G +I IF+
Sbjct: 8 SGSHEGKISL--YSVESGKPEQVLDPQNGKFTLSIAYSPDGKYIASGGIDG-IINIFDVA 64
Query: 179 DGSRLQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSL 307
G ++ + G + S+ SP+ Q L +SD G + ++ +
Sbjct: 65 AG-KVAQTLEG-HAMSVRSLCFSPDSQMLLTASDDGHMKLYDV 105
>gi|11346447|pir||T43158 probable GTP-binding protein beta chain - fission
yeast (Schizosaccharomyces pombe) (fragment)
>gi|1749702|dbj|BAA13908.1| (D89247) similar to Human guanine
nucleotide-binding protein beta subunit-like protein, SWISS-PROT
Accession Number P25388 [Schizosaccharomyces pombe]
Length = 310
Frame 2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | | 310
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 1.3, P = 0.73
Identities = 23/93 (24%), Positives = 47/93 (50%), Frame = +2
Query: 38 VEHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVD 217
+E F L + H ++ T++ DG L A+ GTL+ +++ + + L +
Sbjct: 175 LETFSLRTSHY--GHTGYVSAVTISPDGSLCASGGRDGTLM-LWDLNESTHLYSLEA--- 228
Query: 218 RAEINSIALSPNVQWLAASSDKGTVHVFSLRVR 316
+A IN++ SP+ WL A++ ++ +F L +
Sbjct: 229 KANINALVFSPDRYWLCAATGS-SIRIFDLETQ 260
>gi|4972734|gb|AAD34762.1| (AF132174) unknown [Drosophila melanogaster]
>gi|7299285|gb|AAF54480.1| (AE003685) BcDNA:LD21537 gene product
[Drosophila melanogaster]
Length = 331
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 331
0 150 300
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 1.4, P = 0.76
Identities = 27/99 (27%), Positives = 53/99 (53%), Frame = +2
Query: 11 AGLHKGQVRVEHFGLNVTKLINAHDSQIACFTLTL----DGLLLATASVKGTLIRIFNTM 178
+GL+ G++ + + + K D+Q +TL++ DG +A+ ++ G +I IF+
Sbjct: 144 SGLNDGKISM--YSVETGKAEQTLDAQNGKYTLSIAYSPDGKYIASGAIDG-IITIFDVA 200
Query: 179 DGSRLQEVRRGVDRAEINSIALSPNVQWLAASSDKGTVHVFSL 307
G +Q + G + S+ SPN Q L +SD G + ++ +
Sbjct: 201 AGKVVQTLE-G-HAMPVRSLCFSPNSQLLLTASDDGHMKLYDV 241
>gi|7292701|gb|AAF48098.1| (AE003487) CG1905 gene product [Drosophila
melanogaster]
Length = 2274
Frame 2 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 2274
0 500 1000 1500 2000
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 1.6, P = 0.80
Identities = 36/140 (25%), Positives = 60/140 (42%), Frame = +2
Query: 77 AHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMD---GSRLQEVR------RGVDRAEI 229
AH + G+LL TA +G +F G L V RG A++
Sbjct: 413 AHSEALVAMEFDSSGMLLLTADRRGHDFHVFRVQPHPVGPSLAAVHHLYVLHRGDTSAKV 472
Query: 230 NSIALSPNVQWLAASSDKGTVHVFSLRVR--VFGEDSVTQPNAVQGPALFHQNSSSSLDP 403
IA S + +W A S+ +GT HVF + G + T + V + FH+++ D
Sbjct: 473 QHIAFSLDSRWAAVSTLRGTTHVFPITPYGGAMGVRTHTSLHVVNKLSRFHRSAGLGADG 532
Query: 404 LISPNTGANPNSSLSFMRGVLP 469
S + + + S +F++ + P
Sbjct: 533 RSS--SPISHSESTTFVQSLQP 552
>gi|11139411|gb|AAG31685.1|AF125254_1 (AF125254) activated protein kinase C
receptor LACK [Leishmania panamensis]
Length = 312
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | | 312
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 1.7, P = 0.82
Identities = 23/81 (28%), Positives = 44/81 (54%), Frame = +2
Query: 65 KLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIAL 244
+ + H + ++ T++ DG L A+ G + +++ G +L R V+ A IN IA
Sbjct: 188 RTLKGHSNYVSTVTVSPDGSLCASGGKDGAAL-LWDLSTGEQL--FRINVESA-INQIAF 243
Query: 245 SPNVQWLAASSDKGTVHVFSL 307
SPN W+ +++K ++ V+ L
Sbjct: 244 SPNRFWMCVAAEK-SLSVYDL 263
>gi|7492315|pir||T39922 pop3, a WD repeat protein - fission yeast
(Schizosaccharomyces pombe) >gi|3434986|dbj|BAA32427.1| (AB016895)
Pop3 [Schizosaccharomyces pombe] >gi|6018741|emb|CAB57925.1|
(AL121794) pop3, a WD repeat protein [Schizosaccharomyces pombe]
Length = 314
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | | 314
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 1.7, P = 0.82
Identities = 31/98 (31%), Positives = 46/98 (46%), Frame = +2
Query: 26 GQVRVEHFGLN--VTKLINAHDSQIACFTLTLDGLLLATASVKGTLI--RIFNTMDGSRL 193
G+VR G N +LI D ++ T+ DG +L + KG R+ N S L
Sbjct: 146 GRVRAWDLGENSCTHELIPEEDVPMSSITVGSDGSMLIAGNNKGNCYVWRMLNHQGASLL 205
Query: 194 QEVRR-GVDRAEINSIALSPNVQWLAASSDKGTVHVFS 304
Q V + + I LSP+V+ LA S TV+++S
Sbjct: 206 QPVVKFQAHQRYITRCVLSPDVKHLATCSADATVNIWS 243
>gi|7302720|gb|AAF57798.1| (AE003802) CG10931 gene product [Drosophila
melanogaster]
Length = 307
Frame 2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | | 307
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 2.2, P = 0.89
Identities = 20/82 (24%), Positives = 44/82 (53%), Frame = +2
Query: 65 KLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIAL 244
K+++AH I DG + T+S G L+R++++ G L+ + VD + +
Sbjct: 175 KIVHAHQDPITSVDFHRDGNIFVTSSYDG-LVRLWDSSTGHVLKTLV-DVDNIPVGYVKF 232
Query: 245 SPNVQWLAASSDKGTVHVFSLR 310
SPN +++ +S+ T+ +++ +
Sbjct: 233 SPNGRYILSSTLNNTLRLWNYK 254
>gi|7303694|gb|AAF58744.1| (AE003828) CG12325 gene product [Drosophila
melanogaster]
Length = 949
Frame 2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | 949
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 3.2, P = 0.96
Identities = 28/93 (30%), Positives = 45/93 (48%), Frame = +2
Query: 80 HDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVDRAEINSIALSPNVQ 259
H S++ C + DG +AT + + ++++NT S V + + I S N +
Sbjct: 392 HSSEMTCIAYSSDGQFIATGG-EDSKVKLWNTQ--SSFCFVTFSEHTSGVTGIQFSRNKK 448
Query: 260 WLAASSDKGTVHVFSL-RVRVFGEDSVTQPNAVQ 358
+L +SS GTV F + R R F + T PN Q
Sbjct: 449 FLVSSSLDGTVRAFDVNRYRNFR--TFTSPNPAQ 480
>gi|1169867|sp|P46800|GBLP_DICDI GUANINE NUCLEOTIDE-BINDING PROTEIN BETA
SUBUNIT-LIKE PROTEIN >gi|881422|gb|AAA70100.1| (U27537) G beta like
protein [Dictyostelium discoideum]
Length = 332
Frame 2 hits (HSPs): ____________
Annotated Domains: ________________________________________ ________
__________________________________________________
Database sequence: | | | | 332
0 150 300
__________________
Annotated Domains:
BLOCKS BL00678: Trp-Asp (WD) repeat proteins pr 129..139
DOMO DM00005: BETA-TRANSDUCINFAMILYTRP-ASPREP 9..55
DOMO DM00005: BETA-TRANSDUCINFAMILYTRP-ASPREP 56..100
DOMO DM00005: BETA-TRANSDUCINFAMILYTRP-ASPREP 101..142
DOMO DM00005: BETA-TRANSDUCINFAMILYTRP-ASPREP 143..189
DOMO DM00005: BETA-TRANSDUCINFAMILYTRP-ASPREP 190..231
DOMO DM00005: BETA-TRANSDUCINFAMILYTRP-ASPREP 232..273
DOMO DM00005: BETA-TRANSDUCINFAMILYTRP-ASPREP 282..332
Entrez Repetitive region: WD1. 19..50
Entrez Repetitive region: WD2. 68..98
Entrez Repetitive region: WD3. 110..140
Entrez Repetitive region: WD4. 154..187
Entrez Repetitive region: WD5. 199..229
Entrez Repetitive region: WD6. 240..269
Entrez Repetitive region: WD7. 298..328
PFAM WD40: WD domain, G-beta repeat 11..50
PFAM WD40: WD domain, G-beta repeat 60..98
PFAM WD40: WD domain, G-beta repeat 102..140
PFAM WD40: WD domain, G-beta repeat 146..187
PFAM WD40: WD domain, G-beta repeat 191..229
PFAM WD40: WD domain, G-beta repeat 233..269
PFAM WD40: WD domain, G-beta repeat 290..328
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 85..99
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 127..141
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 174..188
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 16..50
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 65..98
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 108..139
PRODOM PD051743: GBLP_DICDI 141..194
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 196..229
PRODOM PD002398: GBLP(22) 231..272
PRODOM PD002496: GBLP(22) 296..329
PROSITE G_BETA_REPEATS: Beta-transducin family T 127..141
PROSITE G_BETA_REPEATS: Beta-transducin family T 174..188
PROSITE G_BETA_REPEATS: Beta-transducin family T 216..230
PROSITE G_BETA_REPEATS: Beta-transducin family T 85..99
__________________
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 3.3, P = 0.96
Identities = 24/81 (29%), Positives = 40/81 (49%), Frame = +2
Query: 38 VEHFGLNVTKLINAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRRGVD 217
++ F N T + H + T++ DG L A+ K T ++ G L ++
Sbjct: 188 IKSFKCNHT--LTDHTGYVNTVTISPDGSLCASGG-KDTFACLWELSSGKPLYKLEA--- 241
Query: 218 RAEINSIALSPNVQWLAASSD 280
R IN++A SPN WL+A++D
Sbjct: 242 RNTINALAFSPNKYWLSAATD 262
>gi|7293188|gb|AAF48571.1| (AE003501) katanin-80 gene product [Drosophila
melanogaster]
Length = 296
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | 296
0 50 100 150 200 250
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 3.6, P = 0.97
Identities = 20/92 (21%), Positives = 47/92 (51%), Frame = +2
Query: 38 VEHFGLNVTKL---INAHDSQIACFTLTLDGLLLATASVKGTLIRIFNTMDGSRLQEVRR 208
+ + LN K+ +N H + G + + S T +R+++ + + +V R
Sbjct: 84 IRRWDLNSQKIYSTLNGHMKSVRTLDFNPSGEYVVSGS-NDTTVRLWDVQNENNCIKVCR 142
Query: 209 GVDRAEINSIALSPNVQWLAASSDKGTVHVFSLR 310
G + +NS+ SP+ W+A++ +G++ ++ +R
Sbjct: 143 G-HMSHVNSVKFSPDGLWIASAGLEGSILIWDIR 175
WARNING: HSPs involving 17 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.97
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.378 0.171 0.631
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.322 0.135 0.394
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.353 0.152 0.575
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.356 0.157 0.557
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.357 0.154 0.574
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.345 0.152 0.489
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 169 168 10. 75 3 12 22 0.11 34
31 0.11 37
+2 0 169 168 10. 75 3 12 22 0.11 34
31 0.11 37
+1 0 169 168 10. 75 3 12 22 0.11 34
31 0.11 37
-1 0 169 169 10. 75 3 12 22 0.11 34
31 0.11 37
-2 0 169 168 10. 75 3 12 22 0.11 34
31 0.11 37
-3 0 169 168 10. 75 3 12 22 0.11 34
31 0.11 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 67
No. of states in DFA: 595 (59 KB)
Total size of DFA: 197 KB (256 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 157.28u 1.12s 158.40t Elapsed: 00:00:27
Total cpu time: 157.32u 1.19s 158.51t Elapsed: 00:00:27
Start: Sat Feb 2 00:44:51 2002 End: Sat Feb 2 00:45:18 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000