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Alignment last updated: 11/20/2008 17:02:35
AL731725.8 Mouse DNA sequence from clone RP23-146P19 on chromosome X Contains a CpG island, complete sequence [htgs_phase3]
Length: 213,743 bp
BX119980.3 Mouse DNA sequence from clone RP23-456I8 on chromosome X, complete sequence [htgs_phase3]
Length: 29,262 bp
Join evaluation: Alignment count: 1
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Mismatches = 0, Gaps = 0, Length = 2000 Percent identity = 100% Score = 3965 bits (2000), Expect = 0 0 BAC and 1 Fosmid bridging clones. 0 BAC and 1 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. AL731725.8 >211744 ggggtcaatagtttgaatgtaattaaaacattttaaaaagtatgaacatggtagtttata 211803 BX119980.3 >1 ............................................................ 60 AL731725.8 >211804 taaatggagtgtgcattcacataaaatcatgaagttaaacatacacaaactctttaaact 211863 BX119980.3 >61 ............................................................ 120 AL731725.8 >211864 atgttcatgtaaaaccagtaggttagtggtgcaattttattgttttatatattgatcaag 211923 BX119980.3 >121 ............................................................ 180 AL731725.8 >211924 aaaatatgaaaaaaatcctttaccattatacaagtaaatggtaatttatttgtattaatt 211983 BX119980.3 >181 ............................................................ 240 AL731725.8 >211984 aacacattgactaaagcatagatttcccatttacctttcgtaatatttccttaaagtcag 212043 BX119980.3 >241 ............................................................ 300 AL731725.8 >212044 ctgaaaagatttataattaaaacagattcacaaatacagatgttggtctgcacagcttgt 212103 BX119980.3 >301 ............................................................ 360 AL731725.8 >212104 gagagttcacttgtcaaagctttattactatgcagtgtcatggtttgtttggttccttct 212163 BX119980.3 >361 ............................................................ 420 AL731725.8 >212164 ttaatgatgcctgtaaaatgtatttagagcataagctgctttaatcatttttcctggggc 212223 BX119980.3 >421 ............................................................ 480 AL731725.8 >212224 attatactctatactatcagaaaaaaaactgccaaagtggctatttttttatggttgaca 212283 BX119980.3 >481 ............................................................ 540 AL731725.8 >212284 aaaaagatgtgccagaaaatagaattaaaacaaatgtatctgacttgcagagagaatagt 212343 BX119980.3 >541 ............................................................ 600 AL731725.8 >212344 gtgaaggaaattttcatcaaggtttttgagtacacaatgtgagaagctcacaaacaaagg 212403 BX119980.3 >601 ............................................................ 660 AL731725.8 >212404 agaaatatttccctactattttaagaaagcttgttgaacaagtctttttgcttagaaaac 212463 BX119980.3 >661 ............................................................ 720 AL731725.8 >212464 attttagattctgtatacttacacactttaaggaatttagaaaatgagagattatgtggt 212523 BX119980.3 >721 ............................................................ 780 AL731725.8 >212524 acttatgtgtcttaaggaagaattctcacatggtttttctttagggtttcattatttatt 212583 BX119980.3 >781 ............................................................ 840 AL731725.8 >212584 tccaactgaattccatttccttctaatggtgacaatttaagaaaatgaaaaagagaaaac 212643 BX119980.3 >841 ............................................................ 900 AL731725.8 >212644 attttaatttggatcaaaagcagataatataaccaatgatcctaaataccattttcctca 212703 BX119980.3 >901 ............................................................ 960 AL731725.8 >212704 atctttagccataacatttgaaatagatattttttgacattaaatagacaaatagtcaac 212763 BX119980.3 >961 ............................................................ 1020 AL731725.8 >212764 catatccaggattgtataaggtaggaaatattgtaacaacattgaaaagataagtgaaca 212823 BX119980.3 >1021 ............................................................ 1080 AL731725.8 >212824 agtatgataagacttgtttctttattaaaagagctcacaacaattatgcaatatttaaat 212883 BX119980.3 >1081 ............................................................ 1140 AL731725.8 >212884 ttggttgggacatactagatacatattagcagaaagtacaggtagagactaatttcacac 212943 BX119980.3 >1141 ............................................................ 1200 AL731725.8 >212944 tacttacataataactacacatgaatgaaagacattaatatatatgttacaaaatattat 213003 BX119980.3 >1201 ............................................................ 1260 AL731725.8 >213004 aatcatataatattacgttataagatattatatatgaatatttcagaagatgcatttttc 213063 BX119980.3 >1261 ............................................................ 1320 AL731725.8 >213064 tcttcccagtgctaagagttgtttaaactcagaggtctttaccactgagctggatcttta 213123 BX119980.3 >1321 ............................................................ 1380 AL731725.8 >213124 ctcctgtgtatctgagactgttcttaaacgtaaaatttgcttccaagttctgagaatgtg 213183 BX119980.3 >1381 ............................................................ 1440 AL731725.8 >213184 gatatgtaccattataccaaaagagaagaatttgtgccgtaagacaaatattctcaatga 213243 BX119980.3 >1441 ............................................................ 1500 AL731725.8 >213244 tataaatgaaaataaaattggtttcataaatatttccatatgacaaaacactgcactatt 213303 BX119980.3 >1501 ............................................................ 1560 AL731725.8 >213304 ctcacctaaataaatgataattggatatagaatgatggcagcatacaaaagtgtttcatt 213363 BX119980.3 >1561 ............................................................ 1620 AL731725.8 >213364 ataactatctgttacaatacaaaaagaaaaatatgtgcgctatttcatgaactaaaaaaa 213423 BX119980.3 >1621 ............................................................ 1680 AL731725.8 >213424 tcgtatggaaaatgggaaaatatatataaccaattaaatgtatggggaataaaaatagaa 213483 BX119980.3 >1681 ............................................................ 1740 AL731725.8 >213484 aatgcataacaatgttaaatagctttaatgttaaatgggaaaaaataaaacaaaattata 213543 BX119980.3 >1741 ............................................................ 1800 AL731725.8 >213544 gtatcatgtatatatcatgcatatgtcagcttattgacaaaaatgacaaaatattgacat 213603 BX119980.3 >1801 ............................................................ 1860 AL731725.8 >213604 aaaaggatggatgaaagcaaaactagatagatttaaataatgggatagattgggagttcc 213663 BX119980.3 >1861 ............................................................ 1920 AL731725.8 >213664 atgagagcctggactacatgtagaaattgtgtctaaaaaatgaaacaaatacacaaagga 213723 BX119980.3 >1921 ............................................................ 1980 AL731725.8 >213724 atttaaaaagaaaagaattc 213743 BX119980.3 >1981 .................... 2000
Type | Point1 | Point2 | Orient1 | Orient2 | Curator | Comment | Time |
A | 213743 | 2001 | + | + | chenhc | Taxid 10090 chrom X Reference assembly | 2008-11-20 17:02:35.650 |
Id | Type | Date | Whodid | Comment |
7784 | ImportOldDb | 09/02/2005 19:13:00 | f_old_db | |
7785 | ReSetShortOvlp | 09/04/2008 10:31:48 | dbo | |
180082 | CreateSwitchPt | 11/20/2008 17:02:35 | chenhc | tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib |
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
CH29-30D12 | AL731725.8 | 99.52% | pos 100624 (F+) | |||
CH29-506D23 | BX119980.3 | 99.87% | pos 2543 (R-) | |||
CH29-624P11 | AL731725.8 | 99.25% | pos 175731 (R-) | |||
RP23-122B9 | AL731725.8 | 99.59% | pos 155826 (F-) | |||
RP23-129D15 | AL731725.8 | 100% | pos 155830 (F-) | |||
RP23-28M23 | AL731725.8 | 99.3% | pos 189314 (R-) | |||
RP24-98A16 | AL731725.8 | 99.44% | pos 138306 (R-) |
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
WI1-1064P15 | AL731725.8 | 99.26% | pos 107338 (F+) | |||
WI1-1366H19 | AL731725.8 | 100% | pos 119936 (R+) | AL731725.8 | 100% | pos 159561 (F-) |
WI1-1719B21 | AL731725.8 | 100% | pos 57794 (R-) | AL731725.8 | 99.72% | pos 21803 (F+) |
WI1-1916H22 | BX119980.3 | 100% | pos 16913 (R+) | |||
WI1-2196I13 | BX119980.3 | 99.65% | pos 27001 (F-) | |||
WI1-2742G4 | AL731725.8 | 100% | pos 73362 (R+) | AL731725.8 | 99.83% | pos 117953 (F-) |
WI1-2797E21 | AL731725.8 | 100% | pos 189301 (R+) | BX119980.3 | 99.8% | pos 12792 (F-) |