R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|8809614|dbj|BAA97165.1| (AB018117) contains similarity to
EREBP-4~gene_id:MQL5.17 [Arabidopsis thaliana]
Length = 245
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | 245
0 50 100 150 200
Plus Strand HSPs:
Score = 315 (110.9 bits), Expect = 3.1e-27, P = 3.1e-27
Identities = 59/93 (63%), Positives = 72/93 (77%), Frame = +1
Query: 145 ISTSQCH-EEQSNNKIN-----THVLLNVYDLTPVNNYVYWFGFGIFHSGIEVHGKEYGF 306
+S+S C E++ +IN T V LNVYDLTPVNNY+YWFG GIFHSGIE HG EYG+
Sbjct: 6 LSSSLCSGEDKEEEEINGEGSLTPVYLNVYDLTPVNNYLYWFGLGIFHSGIEAHGFEYGY 65
Query: 307 GAHDFPASGVFEVEPRKCPGFIYRCSISLGXTN 405
GAH++ +SGVFEVEPR CPGFI+R S+ LG T+
Sbjct: 66 GAHEYSSSGVFEVEPRSCPGFIFRRSVLLGTTS 98
>gi|7488100|pir||E71444 probable EREBP-4 - Arabidopsis thaliana
>gi|2245108|emb|CAB10530.1| (Z97343) EREBP-4 like protein
[Arabidopsis thaliana] >gi|7268501|emb|CAB78752.1| (AL161546)
EREBP-4 like protein [Arabidopsis thaliana]
Length = 603
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | || 603
0 150 300 450 600
Plus Strand HSPs:
Score = 159 (56.0 bits), Expect = 6.4e-23, Sum P(2) = 6.4e-23
Identities = 32/60 (53%), Positives = 40/60 (66%), Frame = +1
Query: 103 LIYNMGVEENTPNSISTSQCHEEQSNNKINTHVLLNVYDLTPVNNYVYWFGFGIFHSGIE 282
++ M V + +S S+ + +E S T V LNVYDLTPVNNY+YWFG GIFHSGIE
Sbjct: 354 IVCKMWVPTLSSSSCSSDE-RDESSGEAALTPVYLNVYDLTPVNNYLYWFGIGIFHSGIE 412
Score = 150 (52.8 bits), Expect = 6.4e-23, Sum P(2) = 6.4e-23
Identities = 26/48 (54%), Positives = 36/48 (75%), Frame = +1
Query: 262 IFHSGIEVHGKEYGFGAHDFPASGVFEVEPRKCPGFIYRCSISLGXTN 405
+F+ + H EY +GAH++P SGV+EVEPR CPGFI+R S+ LG T+
Sbjct: 429 LFNFNV-AHNLEYCYGAHEYPTSGVYEVEPRNCPGFIFRRSVLLGTTS 475
>gi|4567258|gb|AAD23672.1|AC007070_21 (AC007070) unknown protein [Arabidopsis
thaliana]
Length = 240
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 240
0 50 100 150 200
Plus Strand HSPs:
Score = 266 (93.6 bits), Expect = 4.8e-22, P = 4.8e-22
Identities = 45/69 (65%), Positives = 56/69 (81%), Frame = +1
Query: 199 VLLNVYDLTPVNNYVYWFGFGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPRKCPGFIYR 378
V LNVYDLTP+N Y YW G G+FHSG+EVHG EY FGAH+ ++G+FEVEP+KCPGF +R
Sbjct: 19 VYLNVYDLTPMNAYGYWLGLGVFHSGVEVHGVEYAFGAHESSSTGIFEVEPKKCPGFTFR 78
Query: 379 CSISLGXTN 405
SI +G T+
Sbjct: 79 KSILVGKTD 87
>gi|6503281|gb|AAF14657.1|AC011713_5 (AC011713) Contains similarity to
gb|AF151904 CGI-146 protein from Homo sapiens. EST gb|T44446 comes
from this gene. [Arabidopsis thaliana]
Length = 231
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | 231
0 50 100 150 200
Plus Strand HSPs:
Score = 266 (93.6 bits), Expect = 4.8e-22, P = 4.8e-22
Identities = 44/83 (53%), Positives = 62/83 (74%), Frame = +1
Query: 160 CHEEQSN-NKINTHVLLNVYDLTPVNNYVYWFGFGIFHSGIEVHGKEYGFGAHDFPASGV 336
C + S ++ N V LNVYDLTP+N Y YW G G++HSG+EVHG EY +GAH++P++G+
Sbjct: 3 CRKNSSLVDRGNVPVYLNVYDLTPINGYAYWLGLGVYHSGVEVHGIEYAYGAHEYPSTGI 62
Query: 337 FEVEPRKCPGFIYRCSISLGXTN 405
FE EP++C GF +R SI +G T+
Sbjct: 63 FEGEPKQCEGFTFRKSILIGKTD 85
>gi|7485367|pir||T04647 hypothetical protein F10N7.210 - Arabidopsis thaliana
>gi|2827637|emb|CAA16591.1| (AL021636) putative protein
[Arabidopsis thaliana] >gi|7270102|emb|CAB79916.1| (AL161580)
putative protein [Arabidopsis thaliana]
Length = 680
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | 680
0 150 300 450 600
Plus Strand HSPs:
Score = 267 (94.0 bits), Expect = 3.6e-21, P = 3.6e-21
Identities = 47/77 (61%), Positives = 58/77 (75%), Frame = +1
Query: 172 QSNNKINTHVLLNVYDLTPVNNYVYWFGFGIFHSGIEVHGKEYGFGAHDFPASGVFEVEP 351
+ N V LNVYDLTP+N Y YW G GI+HSG+EVHG EYG+GAH+ +SG+FEVEP
Sbjct: 10 RKKNSGTVPVYLNVYDLTPMNVYGYWLGIGIYHSGLEVHGVEYGYGAHEKSSSGIFEVEP 69
Query: 352 RKCPGFIYRCSISLGXT 402
+KCPGF +R SI +G T
Sbjct: 70 KKCPGFTFRKSILVGET 86
>gi|9802596|gb|AAF99798.1|AC012463_15 (AC012463) T2E6.19 [Arabidopsis thaliana]
Length = 292
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | | 292
0 50 100 150 200 250
Plus Strand HSPs:
Score = 255 (89.8 bits), Expect = 7.1e-21, P = 7.1e-21
Identities = 49/82 (59%), Positives = 57/82 (69%), Frame = +1
Query: 199 VLLNVYDLTPVNNYVYWFGFGIFHSGIEV-------------HGKEYGFGAHDFPASGVF 339
V LNVYDLTP+N Y+YW G GIFHSG+EV HG EY FGAHD+ SGVF
Sbjct: 71 VYLNVYDLTPINGYIYWAGLGIFHSGVEVTAIANSEHLAFTVHGVEYAFGAHDYATSGVF 130
Query: 340 EVEPRKCPGFIYRCSISLGXTN 405
EVEPR+CPGF ++ SI +G TN
Sbjct: 131 EVEPRQCPGFKFKKSIFIGTTN 152
>gi|7303700|gb|AAF58750.1| (AE003828) CG7222 gene product [Drosophila
melanogaster]
Length = 205
Frame 1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 205
0 50 100 150 200
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 36/81 (44%), Positives = 48/81 (59%), Frame = +1
Query: 175 SNNKINTHVLLNVYDLTPVNNYVYWFGFGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPR 354
SN V+LNVYD+ +N Y G G+FHSG+E G E+ +G H FP +GVFE+ PR
Sbjct: 31 SNMGTREPVILNVYDMYWINEYTTSIGLGVFHSGVEAFGTEFAYGGHPFPFTGVFEISPR 90
Query: 355 KCP--G--FIYRCSISLGXTN 405
G F +R SI +G T+
Sbjct: 91 DHDELGDQFQFRQSIQIGCTD 111
>gi|7705642 ref|NP_057160.1| CGI-146 protein [Homo sapiens]
>gi|4929761|gb|AAD34141.1|AF151904_1 (AF151904) CGI-146 protein
[Homo sapiens]
Length = 193
Frame 1 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 193
0 50 100 150
Plus Strand HSPs:
Score = 170 (59.8 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 33/76 (43%), Positives = 49/76 (64%), Frame = +1
Query: 190 NTHVLLNVYDLTPVNNYVYWFGFGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPRKCP-- 363
N V+LNVYD+ +N Y G G+FHSGIEV+G+E+ +G H +P SG+FE+ P
Sbjct: 4 NQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASEL 63
Query: 364 G--FIYRCSISLGXTN 405
G F ++ ++ LG T+
Sbjct: 64 GETFKFKEAVVLGSTD 79
>gi|12719968 ref|XP_001673.2| CGI-146 protein [Homo sapiens]
Length = 213
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | 213
0 50 100 150 200
Plus Strand HSPs:
Score = 170 (59.8 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 33/76 (43%), Positives = 49/76 (64%), Frame = +1
Query: 190 NTHVLLNVYDLTPVNNYVYWFGFGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPRKCP-- 363
N V+LNVYD+ +N Y G G+FHSGIEV+G+E+ +G H +P SG+FE+ P
Sbjct: 23 NQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGREFAYGGHPYPFSGIFEISPGNASEL 82
Query: 364 G--FIYRCSISLGXTN 405
G F ++ ++ LG T+
Sbjct: 83 GETFKFKEAVVLGSTD 98
>gi|7293595|gb|AAF48967.1| (AE003512) CG12231 gene product [Drosophila
melanogaster]
Length = 183
Frame 1 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
Plus Strand HSPs:
Score = 165 (58.1 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 34/74 (45%), Positives = 49/74 (66%), Frame = +1
Query: 199 VLLNVYDLTPVNNYVYWFGFGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPRKCPG---- 366
V+LN+YDL+ NNY + G G+FHSG++++G+EY F A + SG+FE+ P C G
Sbjct: 29 VMLNIYDLSTSNNYTFPLGLGVFHSGVQLYGREYAFLALNLSISGIFEIHP--CNGQEEL 86
Query: 367 ---FIYRCSISLGXTN 405
F +R SI LG T+
Sbjct: 87 GEHFRFRKSILLGYTD 102
>gi|11359149|pir||T50306 hypothetical protein SPAPYUG7.06 [imported] - fission
yeast (Schizosaccharomyces pombe) >gi|6723912|emb|CAB66315.1|
(AL136521) hypothetical protein [Schizosaccharomyces pombe]
Length = 191
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 191
0 50 100 150
Plus Strand HSPs:
Score = 146 (51.4 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 29/59 (49%), Positives = 38/59 (64%), Frame = +1
Query: 223 TPVNNYVYWFGFGIFHSGIEVHGKEYGFGAHDFPAS-GVFEVEPRK-CPGFIYRCSISL 393
+PVN + G GI+H+G+ + GKEY FGAH+ P S GVF PR G +RCSI+L
Sbjct: 4 SPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPLEGCRWRCSIAL 62
>gi|7500623|pir||T29315 hypothetical protein F36D4.5 - Caenorhabditis elegans
>gi|1245689|gb|AAA93489.1| (U53181) coded for by C. elegans cDNA
yk103h12.5; coded for by C. elegans cDNA yk106g3.5; coded for by C.
elegans cDNA cm13b8; coded for by C. elegans cDNA yk106g3.3; coded
for by C. elegans cDNA yk103h12.3 [Caenorhabditis elegans]
Length = 385
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 385
0 150 300
Plus Strand HSPs:
Score = 152 (53.5 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 36/74 (48%), Positives = 45/74 (60%), Frame = +1
Query: 193 THVLLNVYDLTPVNNYVYWFGFGIFHSGIEVHGKEYGFGAHDFPASGVFEVEPRKCP--G 366
T V LNVYD+ +N+Y G GIFHSGIEV G EY +G H + SGVFE P+ G
Sbjct: 30 TVVRLNVYDMYWLNDYASNIGVGIFHSGIEVFGVEYAYGGHPYQFSGVFENSPQDAEELG 89
Query: 367 --FIYRCSISLGXT 402
F ++ SI +G T
Sbjct: 90 ETFKFKESIVVGET 103
>gi|7229640|gb|AAF42919.1|AF229834_1 (AF229834) apoptosis-related protein
PNAS-4 [Homo sapiens]
Length = 163
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 163
0 50 100 150
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 22/44 (50%), Positives = 29/44 (65%), Frame = +1
Query: 190 NTHVLLNVYDLTPVNNYVYWFGFGIFHSGIEVHGKEYGFGAHDF 321
N V+LNVYD+ +N Y G G+FHSGIEV+G+ G+ DF
Sbjct: 6 NQLVVLNVYDMYWMNEYTSSIGIGVFHSGIEVYGRAVVLGSTDF 49
>gi|6907109|dbj|BAA90636.1| (AP001129) hypothetical protein [Oryza sativa]
Length = 209
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 209
0 50 100 150 200
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.0046, P = 0.0046
Identities = 23/48 (47%), Positives = 31/48 (64%), Frame = +1
Query: 259 GIFHSGIEVHG-KEYGFGAHDFPASGVFEVEPRKCPGFIYRCSISLGXT 402
GIFH+ I+V+G +E+ FG + +GVF P K P + YR SI LG T
Sbjct: 52 GIFHTAIQVYGDEEWSFGYCE-NGTGVFSCPPCKNPMYTYRESIVLGKT 99
>gi|7486773|pir||T09560 hypothetical protein L73G19.60 - Arabidopsis thaliana
>gi|4914460|emb|CAB43699.1| (AL050400) putative protein
[Arabidopsis thaliana] >gi|7269418|emb|CAB81378.1| (AL161563)
putative protein [Arabidopsis thaliana]
Length = 252
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | || 252
0 50 100 150 200 250
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.052, P = 0.051
Identities = 31/85 (36%), Positives = 45/85 (52%), Frame = +1
Query: 193 THVLLNVYDLT-----PVNNYVY----WF----GFG-IFHSGIEVHGK-EYGFGAHDFPA 327
T V+L++YD+T NN + +F G G IFHS I+V+G E+ +G +
Sbjct: 2 TEVVLHIYDVTNSGSEKTNNTIVQINRFFKDGIGLGGIFHSAIQVYGNDEWSYGYCEL-G 60
Query: 328 SGVFEVEPRKCPGFIYRCSISLGXTN 405
+GVF K P + YR I LG T+
Sbjct: 61 TGVFSCPSGKNPMYTYREKIVLGKTD 86
>gi|7486771|pir||T09558 hypothetical protein L73G19.40 - Arabidopsis thaliana
>gi|4914458|emb|CAB43697.1| (AL050400) putative protein
[Arabidopsis thaliana] >gi|7269416|emb|CAB81376.1| (AL161563)
putative protein [Arabidopsis thaliana]
Length = 255
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | 255
0 50 100 150 200 250
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.49, P = 0.39
Identities = 21/49 (42%), Positives = 29/49 (59%), Frame = +1
Query: 259 GIFHSGIEVHGK-EYGFGAHDFPASGVFEVEPRKCPGFIYRCSISLGXTN 405
GIFHS I+V+G E+ +G + +GVF K P + YR I LG T+
Sbjct: 38 GIFHSAIQVYGNDEWSYGYCE-QGTGVFSCPSGKNPMYTYREKIVLGKTD 86
>gi|9955683|emb|CAC05576.1| (AJ277112) 35 kDa chemokine binding protein
[Ectromelia virus]
Length = 77
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | 77
0 20 40 60
Plus Strand HSPs:
Score = 58 (20.4 bits), Expect = 8.4, P = 1.0
Identities = 13/55 (23%), Positives = 31/55 (56%), Frame = +1
Query: 82 FLVISKVLIYNMGVEENTPNSISTSQCHEEQSNNKINTHVLLNV--YDLTPVNNYV 243
++V++ + + + + S ++S C EE++N+ + V++ V D TP N+ +
Sbjct: 4 YIVLACICLAAAAIPTSLQQSFASS-CTEEENNHHMGIDVIIKVTKQDQTPTNDKI 58
>gi|2655119|gb|AAC58712.1| (AF025337) envelope glycoprotein [Human
immunodeficiency virus type 2]
Length = 123
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | 123
0 50 100
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 8.8, P = 1.0
Identities = 22/89 (24%), Positives = 44/89 (49%), Frame = +1
Query: 7 NXWHWAXRWICIPSCPWK-NS*PTFPFLVISKVLIYNMGVEENTPNSISTSQCHEEQSN- 180
N W A R +C + PW NS P++ + + +E N + +Q +E++
Sbjct: 11 NSWGCAFRQVCHTTVPWVGNSTPSWENMTWQQWETQIRDLEANISEILEQAQIQQEKNMY 70
Query: 181 --NKINT-HVLLNVYDLTPVNNYVYWFGFGIF 267
K+N+ + N +DLT ++V + +G++
Sbjct: 71 ELQKLNSWDIFGNWFDLT---SWVKYIQYGVY 99
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.94
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.368 0.163 0.730
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.342 0.147 0.518
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.327 0.143 0.507
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.336 0.147 0.486
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.345 0.153 0.541
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.356 0.157 0.628
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 134 131 10. 72 3 12 22 0.11 33
29 0.12 35
+2 0 134 130 10. 72 3 12 22 0.11 33
29 0.12 35
+1 0 135 132 10. 72 3 12 22 0.11 33
30 0.096 36
-1 0 135 131 10. 72 3 12 22 0.11 33
29 0.12 35
-2 0 134 130 10. 72 3 12 22 0.11 33
29 0.12 35
-3 0 134 130 10. 72 3 12 22 0.11 33
29 0.12 35
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 18
No. of states in DFA: 594 (59 KB)
Total size of DFA: 197 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 141.20u 0.81s 142.01t Elapsed: 00:00:45
Total cpu time: 141.25u 0.82s 142.07t Elapsed: 00:00:45
Start: Wed Jan 16 21:03:47 2002 End: Wed Jan 16 21:04:32 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000