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Finding cDNAs
UGID:1841157     UniGene Hs.565094     Homo sapiens (human)   LSMD1 Order cDNA clone, Links
LSM domain containing 1 (LSMD1)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_115732.2 LSM domain containing 1 H. sapiens 100.0 172
XP_001110847.1 PREDICTED: similar to MAK31-like protein M. mulatta 100.0 124
NP_084359.1 LSM domain containing 1 M. musculus 98.4 124
NP_001085519.1 MGC80306 protein X. laevis 81.2 111
NP_001017684.1 cytochrome b5 domain containing 1 like D. rerio 55.7 158

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: brain; mixed; prostate; testis; heart; lymph node; bone marrow; liver; placenta; intestine; lung; muscle; embryonic tissue; uterus; stomach; cervix; amniotic fluid; pituitary gland; eye; pharynx; esophagus; ascites; ovary; mouth; pancreas; uncharacterized tissue; kidney; connective tissue; mammary gland; bone; skin; parathyroid; adrenal gland; vascular; tonsil
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17p13.1
UniSTS entry: Chr 11 GDB:179433
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (6)

BC051846.1 Homo sapiens LSM domain containing 1, mRNA (cDNA clone MGC:60160 IMAGE:4476019), complete cds PA
AF530060.1 Homo sapiens phosphonoformate immuno-associated protein 2 (PFAAP2) mRNA, complete cds P
BC059944.1 Homo sapiens LSM domain containing 1, mRNA (cDNA clone MGC:74837 IMAGE:5223785), complete cds PA
BC006407.2 Homo sapiens LSM domain containing 1, mRNA (cDNA clone MGC:14151 IMAGE:3690202), complete cds PA
NM_032356.3 Homo sapiens LSM domain containing 1 (LSMD1), mRNA PA
BC033861.1 Homo sapiens LSM domain containing 1, mRNA (cDNA clone MGC:44900 IMAGE:5171094), complete cds PA

EST sequences (241)

AI081616.1 Clone IMAGE:1652831 mixed 3' read PA
AI091848.1 Clone IMAGE:1690984 mixed 3' read PA
AI125491.1 Clone IMAGE:1737079 testis 3' read PA
AI129880.1 Clone IMAGE:1711599 uterus 3' read PA
AI084397.1 Clone IMAGE:1668293 parathyroid 3' read PA
AI149437.1 Clone IMAGE:1715190 placenta 3' read PA
AI151519.1 Clone IMAGE:1715904 placenta 3' read PA
AI084625.1 Clone IMAGE:1681448 skin 3' read PA
AI086699.1 Clone IMAGE:1679791 skin 3' read PA
BX097441.1 Clone IMAGp998K23694_;_IMAGE:308878 lung
AI266573.1 Clone IMAGE:1899847 kidney 3' read PA
CB159347.1 Clone L18POOL1n1-30-E07 liver 5' read P
CB112076.1 Clone L5HLK1-13-A10 liver 5' read
CB138091.1 Clone L5HLK1-39-E02 liver 5' read P
CB139517.1 Clone L15CKK1-17-E02 liver 5' read P
AA911541.1 Clone IMAGE:1417683 lung 3' read
AI197764.1 Clone IMAGE:1859790 brain 3' read PA
AI347354.1 Clone IMAGE:2063011 intestine 3' read P
AI377450.1 Clone IMAGE:2065485 embryonic tissue 3' read PA
AI393144.1 Clone IMAGE:2111349 mixed 3' read PA
AI420490.1 Clone IMAGE:2094268 prostate 3' read PA
AI474425.1 Clone IMAGE:2118834 prostate 3' read PA
AI494287.1 Clone IMAGE:2020045 brain 3' read PA
AI494289.1 Clone IMAGE:2020049 brain 3' read P
AI525457.1 prostate 5' read P
F26175.1 Clone s4000050E01 muscle P
F27632.1 Clone s4000006A03 muscle P
F31699.1 Clone s4000124H09 muscle P
F36824.1 Clone sH5-000020-0/E08 muscle P
F37318.1 Clone sH5-000025-0/F01 muscle P
AI693970.1 Clone IMAGE:2328000 intestine 3' read PA
CB306795.1 Clone UI-CF-FN0-aem-n-22-0-UI lung 3' read PA
AI936258.1 Clone IMAGE:2460057 prostate 3' read PA
AI638787.1 Clone IMAGE:2242484 uncharacterized tissue 3' read A
CB960615.1 Clone IMAGE:30343145 placenta 5' read P
CB993030.1 Clone IMAGE:30337167 placenta 5' read P
CB993253.1 Clone IMAGE:30337168 placenta 5' read P
AI972476.1 Clone IMAGE:2490139 prostate 3' read PA
AI985797.1 Clone IMAGE:2508050 uterus 3' read PA
CD385263.1 embryonic tissue 5' read PA
AW014615.1 Clone IMAGE:2710898 uncharacterized tissue 3' read PA
BX499779.1 Clone DKFZp779F1851 liver 5' read PA
AW071127.1 Clone IMAGE:2568567 mammary gland 3' read PA
AW071500.1 Clone IMAGE:2569696 connective tissue 3' read PA
AW084595.1 Clone IMAGE:2569720 connective tissue 3' read PA
AW085660.1 Clone IMAGE:2578932 esophagus 3' read PA
CF129777.1 Clone IMAGE:30565055 lung 5' read PA
AJ574483.1 Clone HSPD48432 muscle P
CF780522.1 Clone IMAGE:30524691 connective tissue 5' read P
AW407850.1 Clone IMAGE:3060732 lymph node 5' read PM
AW515577.1 Clone IMAGE:2807343 kidney 3' read A
AW571664.1 Clone IMAGE:2839447 uterus 3' read PA
AW572471.1 Clone IMAGE:2806557 kidney 3' read A
CN261643.1 embryonic tissue 5' read P
CN261644.1 embryonic tissue 5' read PA
CN261642.1 embryonic tissue 5' read PA
AW956199.1 uncharacterized tissue PA
AW956200.1 uncharacterized tissue P
AW971108.1 uncharacterized tissue PA
AW975184.1 uncharacterized tissue P
AJ714035.1 Clone LKPD02442 bone marrow P
AJ707447.1 Clone CMPD01496 heart P
CV027003.1 mixed 5' read P
CV030659.1 mixed 5' read P
BP196787.1 Clone ADG03016 adrenal gland 5' read P
BP313002.1 Clone OFR01815 mammary gland 5' read
BP315157.1 Clone OFR07932 mammary gland 5' read
BP316393.1 Clone PCD01255 heart 5' read P
BP317747.1 Clone PCD04424 heart 5' read P
BP318615.1 Clone PCD08091 heart 5' read P
BP319706.1 Clone PCD13122 heart 5' read P
BP272878.1 Clone KAT06721 stomach 5' read
BE395380.1 Clone IMAGE:3632181 uterus 5' read PM
BE545175.1 Clone IMAGE:3460882 cervix 5' read PM
BE562833.1 Clone IMAGE:3690202 uterus 5' read PM
BE645163.1 Clone IMAGE:3287244 mixed 3' read PA
DN831105.1 Clone MGC1.2.1.1.1.B05 mixed
BE856531.1 Clone IMAGE:3303605 prostate 3' read PA
BE925727.1 amniotic fluid
BF002729.1 Clone IMAGE:3310848 prostate 3' read PA
AV752280.1 Clone NPDBHF12 pituitary gland 5' read
BF130189.1 Clone IMAGE:4041939 kidney 5' read
BY797187.2 Clone HE2246.seq eye 5' read P
BF333832.1 intestine
BF333841.1 intestine
AA720918.1 Clone IMAGE:1239060 connective tissue 3' read P
AA737354.1 Clone IMAGE:1250189 bone PA
BF675076.1 Clone IMAGE:4273147 prostate 5' read
DA236715.1 Clone BRAWH3033453 brain 5' read
DA191568.1 Clone BRAMY3014543 brain 5' read
DA609700.1 Clone IMR322007362 brain 5' read
DA443150.1 Clone CTONG2012834 mouth 5' read
DA479551.1 Clone DFNES2009577 skin 5' read
DA803795.1 Clone OCBBF3008715 brain 5' read
DA811074.1 Clone OCBBF3027892 brain 5' read
DA917359.1 Clone SMINT2002004 intestine 5' read P
BF439491.1 Clone IMAGE:3272461 mixed 3' read PA
DA863630.1 Clone PLACE7017106 placenta 5' read
DR980352.1 Clone ID_16125 placenta 3' read A
DR980659.1 Clone ID_16615 placenta 3' read A
DB291758.1 Clone UTERU3022242 uterus 5' read
DB057022.1 Clone TESTI2049024 testis 5' read P
BF761392.1 intestine
DW410208.1 liver P
DW422305.1 liver P
DW429733.1 liver P
DW449434.1 liver P
BG033260.1 Clone IMAGE:4392890 mammary gland 5' read PA
BF973307.1 Clone IMAGE:4330975 uterus 5' read A
N22519.1 Clone IMAGE:255188 pharynx 3' read A
DB557598.1 Clone H033021G03 brain 3' read
DB462616.1 Clone H013099D03 testis 5' read
DB500756.1 Clone H033077P22 brain 5' read P
DB569547.1 Clone H033069L13 brain 3' read PA
DB547889.1 Clone H023081N22 brain 3' read PA
DB488139.1 Clone H033021G03 brain 5' read P
DB571926.1 Clone H033077P22 brain 3' read P
DB448597.1 Clone H013037H18 testis 5' read
DB470504.1 Clone H023044P22 brain 5' read PA
DB538665.1 Clone H023044P22 brain 3' read PA
BG255578.1 Clone IMAGE:4476019 prostate 5' read
DB525204.1 Clone H013087F05 testis 3' read PA
DB525876.1 Clone H013090C10 testis 3' read PA
DB528046.1 Clone H013099D03 testis 3' read P
DB513721.1 Clone H013037H18 testis 3' read P
DB459764.1 Clone H013087F05 testis 5' read
DB479209.1 Clone H023081N22 brain 5' read P
DB498467.1 Clone H033069L13 brain 5' read P
DB460465.1 Clone H013090C10 testis 5' read
BG271891.1 Clone IMAGE:4264919 mixed 3' read
BG326202.1 Clone IMAGE:4562738 kidney 5' read
EC444256.1 prostate
EC447061.1 prostate
EC460394.1 prostate
EC470299.1 prostate
EC486223.1 prostate
EC499649.1 prostate
EC507166.1 prostate
EC534337.1 prostate
BF173515.1 bone marrow
BG619488.1 Clone IMAGE:4732431 placenta 5' read
BG184163.1 connective tissue PA
BG198652.1 connective tissue PA
BG206464.1 connective tissue PA
BG212200.1 connective tissue PA
BI011813.1 lung
EL735010.1 mixed 5' read P
BI667144.1 Clone IMAGE:5310824 brain 5' read P
BI667405.1 Clone IMAGE:5311629 brain 5' read P
N93600.1 Clone IMAGE:308878 lung 3' read PA
N93603.1 Clone IMAGE:308877 lung 3' read PA
BI752512.1 Clone IMAGE:5192401 brain 5' read PA
BI752770.1 Clone IMAGE:5192377 brain 5' read P
BI752771.1 Clone IMAGE:5192425 brain 5' read PA
BI755418.1 Clone IMAGE:5195051 brain 5' read P
BI829300.1 Clone IMAGE:5171094 brain 5' read P
BI834418.1 Clone IMAGE:5223785 mixed 5' read PA
BI914080.1 Clone IMAGE:5246234 brain 5' read
W23525.1 Clone IMAGE:327791 heart 3' read A
W25477.1 Clone IMAGE:308878 lung 5' read
BM662793.1 Clone UI-E-CI1-aay-d-04-0-UI eye 3' read PA
BM669034.1 Clone UI-E-CI1-agf-f-03-0-UI eye 3' read PA
BM670420.1 Clone UI-E-DW1-ahc-p-01-0-UI eye 3' read PA
BM686203.1 Clone UI-E-CI1-aay-d-04-0-UI eye 5' read PA
BM703886.1 Clone UI-E-CK1-afk-a-07-0-UI eye 5' read PA
BM705302.1 Clone UI-E-CI1-agf-f-03-0-UI eye 5' read P
BM708275.1 Clone UI-E-CI1-afu-i-17-0-UI eye 5' read P
BM792351.1 Clone S22SNU16n1-13-F11 ascites 5' read PA
BM817770.1 Clone S21SNU520s1-2-D06 stomach 5' read PA
BM850234.1 Clone S21SNU520-41-C04 stomach 5' read PA
BM851480.1 Clone S21SNU520-37-D04 stomach 5' read P
BM853170.1 Clone S22SNU16n1-134-C05 ascites 5' read P
W90012.1 Clone IMAGE:417358 mixed 3' read P
W90054.1 Clone IMAGE:417353 mixed 5' read P
BQ011035.1 Clone UI-1-BC1p-asp-b-01-0-UI placenta 3' read PA
BQ011710.1 Clone UI-1-BC1p-atd-f-01-0-UI placenta 3' read PA
BQ013068.1 Clone UI-1-BC1p-ayk-h-04-0-UI placenta 3' read PA
BQ013127.1 Clone UI-1-BC1p-ayl-h-08-0-UI placenta 3' read PA
BQ067207.1 Clone IMAGE:5751585 mixed 5' read PA
BQ232957.1 Clone IMAGE:5772868 lung 5' read P
BQ361692.1 ovary
BQ436527.1 Clone IMAGE:6010059 lung 5' read PA
BQ438828.1 Clone IMAGE:6053624 pancreas 5' read PA
BQ574494.1 Clone UI-H-EZ1-bba-o-21-0-UI bone 3' read PA
BQ649368.1 Clone IMAGE:6293896 liver 5' read PA
BG059145.1 Clone IMAGE:4254306 pharynx 5' read PA
BU069155.1 Clone IMAGE:6039274 pancreas 3' read P
BU534977.1 Clone IMAGE:6562350 mixed 5' read P
BU537621.1 Clone IMAGE:6567897 mixed 5' read PA
BU537794.1 Clone IMAGE:6568195 mixed 5' read A
BU540204.1 Clone IMAGE:6571588 mixed 5' read P
AA074748.1 Clone IMAGE:544403 ovary 3' read PA
AA074804.1 Clone IMAGE:544403 ovary 5' read P
GD157911.1 3' read A
AA113162.1 Clone IMAGE:526857 pancreas 3' read PA
AA112406.1 Clone IMAGE:526857 pancreas 5' read
AA159941.1 Clone IMAGE:593124 pancreas 5' read
BU566021.1 Clone IMAGE:6605038 mixed 5' read P
AA160911.1 Clone IMAGE:593124 pancreas 3' read PA
BU630897.1 Clone UI-H-FL0-bds-l-05-0-UI bone 3' read PA
AA195864.1 Clone IMAGE:628346 muscle 3' read PA
BU682326.1 Clone UI-CF-EC1-acb-g-11-0-UI lung 3' read PA
BU731365.1 Clone UI-E-CI1-afu-i-17-0-UI eye 3' read PA
BU851819.1 Clone IMAGE:6603345 mixed 5' read P
BU851905.1 Clone IMAGE:6603462 mixed 5' read P
BU941699.1 Clone IMAGE:6714017 mixed 5' read P
AA248812.1 heart 5' read
AA281319.1 Clone IMAGE:705084 lymph node 3' read PA
AA306316.1 vascular 5' read P
CA775495.1 Clone IMAGE:6133289 pancreas 5' read P
AA353121.1 uncharacterized tissue 5' read P
AA375470.1 lung 5' read P
F20569.1 Clone NOTAVAIL04938 muscle P
AA489194.1 Clone IMAGE:825012 lymph node 3' read PA
AA493412.1 Clone IMAGE:900623 intestine 3' read A
AA502588.1 Clone IMAGE:898747 intestine 3' read PA
AA508075.1 Clone IMAGE:942330 prostate PA
AA515837.1 Clone IMAGE:971802 bone
AA524403.1 Clone IMAGE:937623 intestine 3' read PA
AA552285.1 Clone IMAGE:999713 prostate P
AA568175.1 Clone IMAGE:1057553 intestine 3' read PA
AA582636.1 Clone IMAGE:1087415 kidney 3' read
AA587753.1 Clone IMAGE:1075998 intestine 3' read PA
AA594610.1 Clone IMAGE:1058765 intestine 3' read P
AA648466.1 Clone IMAGE:1184441 lymph node 3' read P
AA669591.1 Clone IMAGE:856874 ovary 3' read PA
AA633724.1 Clone IMAGE:1141455 testis 3' read PA
AA732091.1 Clone IMAGE:1251437 lymph node 3' read P
AA721319.1 Clone IMAGE:1300718 lymph node 3' read P
AA804929.1 Clone IMAGE:1237847 uncharacterized tissue P
AA807784.1 Clone IMAGE:1217798 muscle P
AA808962.1 Clone IMAGE:1240663 tonsil 3' read A
AA809924.1 Clone IMAGE:1319843 lymph node 3' read A
AA828224.1 Clone IMAGE:1423003 kidney 3' read PA
AA843384.1 Clone IMAGE:1390509 parathyroid 3' read PA
AA877288.1 Clone IMAGE:1161195 intestine 3' read PA
AA885335.1 Clone IMAGE:1461745 mixed 3' read P
AA890650.1 Clone IMAGE:1405682 parathyroid 3' read PA
AA918036.1 Clone IMAGE:1535027 kidney 3' read PA
AA918960.1 Clone IMAGE:1536121 kidney 3' read A
AA954067.1 Clone IMAGE:1561286 mixed 3' read PA


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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