25
proteins |
J |
KOG0857 |
60s ribosomal protein L10 |
24 hits
96 letters
hsa 
518 = Hs20554854 (96) =
hsa 273 = Hs5174431 (214) =
hsa 267 = Hs18152783 (214) =
dme 
250 = 7289746 (218) =
cel 
228 = CE01543 (214) =
spo 
227 = SPBC18E5.04 (221) =
spo 227 = SPAP7G5.05 (221) =
ecu 
207 = ECU08g1570 (219) =
sce 
204 = YLR075w (221) =
ath 
201 = At1g66580 (184) =
ath 201 = At1g26910 (221) =
ath 201 = At1g14320 (220) =
hsa 95 = Hs17488306 (122) =
hsa 89 = Hs17444345 (150) =
hsa 84 = Hs17451239 (158) =
hsa 76 = Hs17474275 (266) =
hsa 74 = Hs20542535 (163) =
hsa 66 = Hs20562006 (169) =
hsa 64 = Hs17480872 (112) =
hsa 63 = Hs22052014 (196) =
dme 61 _ 7298058 (1906) KOG4560
hsa 59 = Hs17462976 (214) =
ath 57 At2g27110 (849)
dme 57 _ 7295184 (851) KOG3524
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Hs20554854
(96 letters)
Database: kyvama
112,920 sequences; 47,500,486 total letters
Score E
Sequences producing significant alignments: (bits) Value
Hs20554854 204 3e-53
Hs5174431 109 9e-25
Hs18152783 107 4e-24
7289746 100 4e-22
CE01543 92 1e-19
SPBC18E5.04 92 2e-19
SPAP7G5.05 92 2e-19
ECU08g1570 84 4e-17
YLR075w 83 9e-17
At1g66580 82 2e-16
At1g26910 82 2e-16
At1g14320 82 2e-16
Hs17488306 41 4e-04
Hs17444345 39 0.002
Hs17451239 37 0.007
Hs17474275 34 0.060
Hs20542535 33 0.10
Hs20562006 30 0.86
Hs17480872 29 1.5
Hs22052014 29 1.9
7298058 28 3.3
Hs17462976 27 5.6
At2g27110 27 9.5
7295184 27 9.5
# >Hs20554854
# Length = 96
#
# Score = 204 bits (518), Expect = 3e-53
# Identities = 96/96 (100%), Positives = 96/96 (100%)
#
# Query: 1 MVSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFHIQVWFYSFQVMQNSKMLSCARADRL 60
# MVSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFHIQVWFYSFQVMQNSKMLSCARADRL
# Sbjct: 1 MVSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFHIQVWFYSFQVMQNSKMLSCARADRL 60
#
# Query: 61 QMGMKDAFGKPQGTVARVRMSQFTCPFTPNCRTRSM 96
# QMGMKDAFGKPQGTVARVRMSQFTCPFTPNCRTRSM
# Sbjct: 61 QMGMKDAFGKPQGTVARVRMSQFTCPFTPNCRTRSM 96
#
#
# >Hs5174431
# Length = 214
#
# Score = 109 bits (273), Expect = 9e-25
# Identities = 54/82 (65%), Positives = 64/82 (77%)
#
# Query: 1 MVSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFHIQVWFYSFQVMQNSKMLSCARADRL 60
# MVSDEYEQ SE LE A I AN+YM+K+C K GFHI+V + F V++ +KMLSCA ADRL
# Sbjct: 52 MVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRL 111
#
# Query: 61 QMGMKDAFGKPQGTVARVRMSQ 82
# Q GM+ AFGKPQGTVARV + Q
# Sbjct: 112 QTGMRGAFGKPQGTVARVHIGQ 133
#
#
# >Hs18152783
# Length = 214
#
# Score = 107 bits (267), Expect = 4e-24
# Identities = 52/82 (63%), Positives = 64/82 (77%)
#
# Query: 1 MVSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFHIQVWFYSFQVMQNSKMLSCARADRL 60
# MVSDEYEQ SE LE A I AN+YM+K+C + GFH++V + F V++ +KMLSCA ADRL
# Sbjct: 52 MVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRL 111
#
# Query: 61 QMGMKDAFGKPQGTVARVRMSQ 82
# Q GM+ AFGKPQGTVARV + Q
# Sbjct: 112 QTGMRGAFGKPQGTVARVHIGQ 133
#
#
# >7289746
# Length = 218
#
# Score = 100 bits (250), Expect = 4e-22
# Identities = 49/82 (59%), Positives = 61/82 (73%)
#
# Query: 1 MVSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFHIQVWFYSFQVMQNSKMLSCARADRL 60
# +VSDEYEQ SE LE I N+Y++K C K FHI++ + F V++ +KMLSCA ADRL
# Sbjct: 52 LVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRL 111
#
# Query: 61 QMGMKDAFGKPQGTVARVRMSQ 82
# Q GM+ AFGKPQGTVARVR+ Q
# Sbjct: 112 QTGMRGAFGKPQGTVARVRIGQ 133
#
#
# >CE01543
# Length = 214
#
# Score = 92.4 bits (228), Expect = 1e-19
# Identities = 46/78 (58%), Positives = 57/78 (72%)
#
# Query: 1 MVSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFHIQVWFYSFQVMQNSKMLSCARADRL 60
# M+S+E E SE LE A I AN+YM+K C K GFH++V + F V + +KMLSCA ADRL
# Sbjct: 52 MMSNEREHLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRL 111
#
# Query: 61 QMGMKDAFGKPQGTVARV 78
# Q GM+ A+GKPQG VARV
# Sbjct: 112 QTGMRGAYGKPQGLVARV 129
#
#
# >SPBC18E5.04
# Length = 221
#
# Score = 92.0 bits (227), Expect = 2e-19
# Identities = 46/82 (56%), Positives = 59/82 (71%)
#
# Query: 1 MVSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFHIQVWFYSFQVMQNSKMLSCARADRL 60
# +VS+EYEQ SE LE A I AN+Y++K K FH++V + F V++ +KMLSCA ADRL
# Sbjct: 52 LVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRL 111
#
# Query: 61 QMGMKDAFGKPQGTVARVRMSQ 82
# Q GM+ AFGKP G VARV + Q
# Sbjct: 112 QTGMRHAFGKPNGLVARVNIGQ 133
#
#
# >SPAP7G5.05
# Length = 221
#
# Score = 92.0 bits (227), Expect = 2e-19
# Identities = 46/82 (56%), Positives = 59/82 (71%)
#
# Query: 1 MVSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFHIQVWFYSFQVMQNSKMLSCARADRL 60
# +VS+EYEQ SE LE A I AN+Y++K K FH++V + F V++ +KMLSCA ADRL
# Sbjct: 52 LVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRL 111
#
# Query: 61 QMGMKDAFGKPQGTVARVRMSQ 82
# Q GM+ AFGKP G VARV + Q
# Sbjct: 112 QTGMRHAFGKPNGLVARVNIGQ 133
#
#
# >ECU08g1570
# Length = 219
#
# Score = 84.3 bits (207), Expect = 4e-17
# Identities = 41/81 (50%), Positives = 55/81 (67%)
#
# Query: 2 VSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFHIQVWFYSFQVMQNSKMLSCARADRLQ 61
# +S+E E +E LE A I AN+YM+K K FH+++ Y F V++ +KMLSCA ADRLQ
# Sbjct: 53 ISNERENLSAEALEAARICANKYMVKHAGKDNFHLRIRVYPFHVLRINKMLSCAGADRLQ 112
#
# Query: 62 MGMKDAFGKPQGTVARVRMSQ 82
# GM+ +FGKP G ARV +Q
# Sbjct: 113 TGMRGSFGKPYGRAARVVFNQ 133
#
#
# >YLR075w
# Length = 221
#
# Score = 83.2 bits (204), Expect = 9e-17
# Identities = 42/82 (51%), Positives = 55/82 (66%)
#
# Query: 1 MVSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFHIQVWFYSFQVMQNSKMLSCARADRL 60
# +VS+E EQ SE LE A I AN+YM + FH++V + F V++ +KMLSCA ADRL
# Sbjct: 52 LVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRL 111
#
# Query: 61 QMGMKDAFGKPQGTVARVRMSQ 82
# Q GM+ A+GKP G ARV + Q
# Sbjct: 112 QQGMRGAWGKPHGLAARVDIGQ 133
#
#
# >At1g66580
# Length = 184
#
# Score = 82.0 bits (201), Expect = 2e-16
# Identities = 42/82 (51%), Positives = 55/82 (66%)
#
# Query: 1 MVSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFHIQVWFYSFQVMQNSKMLSCARADRL 60
# +VS E E SE LE A I N+YM+K+ K FH+++ + F V++ +KMLSCA ADRL
# Sbjct: 15 LVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRL 74
#
# Query: 61 QMGMKDAFGKPQGTVARVRMSQ 82
# Q GM+ AFGK GT ARV + Q
# Sbjct: 75 QTGMRGAFGKALGTCARVAIGQ 96
#
#
# >At1g26910
# Length = 221
#
# Score = 82.0 bits (201), Expect = 2e-16
# Identities = 42/82 (51%), Positives = 55/82 (66%)
#
# Query: 1 MVSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFHIQVWFYSFQVMQNSKMLSCARADRL 60
# +VS E E SE LE A I N+YM+K+ K FH+++ + F V++ +KMLSCA ADRL
# Sbjct: 52 LVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRL 111
#
# Query: 61 QMGMKDAFGKPQGTVARVRMSQ 82
# Q GM+ AFGK GT ARV + Q
# Sbjct: 112 QTGMRGAFGKALGTCARVAIGQ 133
#
#
# >At1g14320
# Length = 220
#
# Score = 82.0 bits (201), Expect = 2e-16
# Identities = 42/82 (51%), Positives = 55/82 (66%)
#
# Query: 1 MVSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFHIQVWFYSFQVMQNSKMLSCARADRL 60
# +VS E E SE LE A I N+YM+K+ K FH+++ + F V++ +KMLSCA ADRL
# Sbjct: 52 LVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRL 111
#
# Query: 61 QMGMKDAFGKPQGTVARVRMSQ 82
# Q GM+ AFGK GT ARV + Q
# Sbjct: 112 QTGMRGAFGKALGTCARVAIGQ 133
#
#
# >Hs17488306
# Length = 122
#
# Score = 41.2 bits (95), Expect = 4e-04
# Identities = 19/31 (61%), Positives = 21/31 (67%)
#
# Query: 54 CARADRLQMGMKDAFGKPQGTVARVRMSQFT 84
# C RLQ GM+ AFGKPQGTVA V + Q T
# Sbjct: 39 CYPQSRLQTGMRGAFGKPQGTVAEVHIGQVT 69
#
#
# >Hs17444345
# Length = 150
#
# Score = 38.9 bits (89), Expect = 0.002
# Identities = 18/24 (75%), Positives = 20/24 (83%)
#
# Query: 59 RLQMGMKDAFGKPQGTVARVRMSQ 82
# RLQ GM+ AFGKPQGTVARV + Q
# Sbjct: 46 RLQTGMQVAFGKPQGTVARVHIGQ 69
#
#
# >Hs17451239
# Length = 158
#
# Score = 37.0 bits (84), Expect = 0.007
# Identities = 16/24 (66%), Positives = 20/24 (82%)
#
# Query: 59 RLQMGMKDAFGKPQGTVARVRMSQ 82
# RL+ G++ AFGKPQGTVARV + Q
# Sbjct: 89 RLETGIQGAFGKPQGTVARVHIGQ 112
#
#
# >Hs17474275
# Length = 266
#
# Score = 33.9 bits (76), Expect = 0.060
# Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
#
# Query: 39 WFYSFQVMQNSKMLSCARADRLQMGMKDAFGKPQGTVA 76
# W SFQ+ + L+ + RLQ GM+ AFGKP+GTVA
# Sbjct: 146 WRQSFQMDVHVFDLALPQC-RLQTGMRGAFGKPRGTVA 182
#
#
# >Hs20542535
# Length = 163
#
# Score = 33.1 bits (74), Expect = 0.10
# Identities = 16/25 (64%), Positives = 17/25 (68%)
#
# Query: 1 MVSDEYEQFFSEVLEDAHIWANRYM 25
# MVSDEYE SE LE I AN+YM
# Sbjct: 1 MVSDEYELLSSEALEAVRICANKYM 25
#
#
# >Hs20562006
# Length = 169
#
# Score = 30.0 bits (66), Expect = 0.86
# Identities = 19/44 (43%), Positives = 26/44 (58%), Gaps = 1/44 (2%)
#
# Query: 39 WFYSFQVMQNSKMLSCARADRLQMGMKDAFGKPQGTVARVRMSQ 82
# W +FQ+ + L+ R RLQ ++ AF K QGTVARV + Q
# Sbjct: 8 WRQAFQMYVHVFDLAL-RQCRLQADIRGAFEKLQGTVARVHIGQ 50
#
#
# >Hs17480872
# Length = 112
#
# Score = 29.3 bits (64), Expect = 1.5
# Identities = 12/17 (70%), Positives = 14/17 (81%)
#
# Query: 66 DAFGKPQGTVARVRMSQ 82
# D+ GKPQGTVARV + Q
# Sbjct: 16 DSLGKPQGTVARVHIGQ 32
#
#
# >Hs22052014
# Length = 196
#
# Score = 28.9 bits (63), Expect = 1.9
# Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
#
# Query: 48 NSKMLSCARADRLQMGMKDAFGKPQGTVARVRMS 81
# N M ++ D +G FG+PQGTVARV +S
# Sbjct: 31 NKIMTILSKCDERHVG--GVFGEPQGTVARVHLS 62
#
#
# >7298058
# Length = 1906
#
# Score = 28.1 bits (61), Expect = 3.3
# Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
#
# Query: 66 DAFGKPQGTVARVRMSQFTCPFTPNCRTRS 95
# DA G+ T+++ R+ QF CPFT NC RS
# Sbjct: 1401 DALGEAI-TISQSRLEQFDCPFT-NCIMRS 1428
#
#
# >Hs17462976
# Length = 214
#
# Score = 27.3 bits (59), Expect = 5.6
# Identities = 12/25 (48%), Positives = 18/25 (72%)
#
# Query: 59 RLQMGMKDAFGKPQGTVARVRMSQF 83
# RLQ G++ KPQGT+AR+ ++ F
# Sbjct: 4 RLQTGVQGISRKPQGTMARIYIAFF 28
#
#
# >At2g27110
# Length = 849
#
# Score = 26.6 bits (57), Expect = 9.5
# Identities = 15/51 (29%), Positives = 24/51 (46%)
#
# Query: 39 WFYSFQVMQNSKMLSCARADRLQMGMKDAFGKPQGTVARVRMSQFTCPFTP 89
# +FY+ Q+ ++++M + AD FG R R +QF PF P
# Sbjct: 214 FFYAVQLDEDNQMSNVFWADSRSRVAYTHFGDTVTLDTRYRCNQFRVPFAP 264
#
#
# >7295184
# Length = 851
#
# Score = 26.6 bits (57), Expect = 9.5
# Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 17/104 (16%)
#
# Query: 1 MVSDEYEQFFSEVLEDAHIWANRYMIKTCSKIGFH-----------------IQVWFYSF 43
# ++ + E+ ++ + D + Y+ K C++I H ++V
# Sbjct: 682 LLRGDKEKLYTFTISDEETDKSVYVKKLCNQIAAHTCRTDADKLLICRTSQELEVDISDV 741
#
# Query: 44 QVMQNSKMLSCARADRLQMGMKDAFGKPQGTVARVRMSQFTCPF 87
# V SK A RL++G +F K + R + T PF
# Sbjct: 742 NVSTLSKAFKLAAKTRLKVGRAFSFNKTPNKLKRAVSTMMTSPF 785
#
#
Database: kyvama
Posted date: Nov 8, 2002 2:42 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Lambda K H
0.328 0.134 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,336,669
Number of Sequences: 112920
Number of extensions: 260406
Number of successful extensions: 615
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 593
Number of HSP's gapped (non-prelim): 24
length of query: 96
length of database: 47,500,486
effective HSP length: 72
effective length of query: 24
effective length of database: 39,370,246
effective search space: 944885904
effective search space used: 944885904
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)
S2: 57 (26.6 bits)