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UniSTS:26870 Links
D6S294
Homo sapiens chromosome 6, locus HCRTR2
Pan troglodytes chromosome 6, locus HCRTR2

Found by e-PCR in sequences from Homo sapiens and Pan troglodytes.

Primer InformationHelp

Forward primer:CAGGTTTGTCCAAGATTTCA
Reverse primer:CTAAAGTCTCCATCTTCGATTG
PCR product size:249 (bp), Homo sapiens
GenBank Accession:Z16922

   Homo sapiens
Name: D6S294
Also known as: AFM205yc7 SHGC-915
Polymorphism info:  

Cross References Help
Gene GeneID:3062
 Symbol:HCRTR2
 Description:hypocretin (orexin) receptor 2
 Position:6p12

Mapping InformationHelp
D6S294 Sequence Map: Chr 6|HuRef Map Viewer
  Position: 54978932-54979178 (bp)
 
D6S294 Sequence Map: Chr 6 Map Viewer
  Position: 55252094-55252342 (bp)
 
D6S294 Sequence Map: Chr 6|Celera Map Viewer
  Position: 56805682-56805930 (bp)
 
SHGC-915 NCBI RH Map: Chr 6 Map Viewer
  Position: 725.7 (cR)
  Lod score: 3.79
 
SHGC-915 TNG Map: Chr 6 Map Viewer
  Position: 27539 (cR50000)
  Lod score: 14.6
  Reference Interval: 68
 
SHGC-915 Stanford-G3 Map: Chr 6 Map Viewer
  Position: 2902 (cR10000)
  Lod score: F
  Reference Interval: 51
 
AFM205yc7 GeneMap99-G3 Map: Chr 6 Map Viewer
  Position: 3034 (cR10000)
  Lod score: F
  Reference Interval: D6S294-D6S430

Electronic PCR results Help
Genomic (5 of 9)[Show All Hits]
Z16922.1 66 .. 314 (249 bp)  
AL449104.5 91334 .. 91582 (249 bp)  
AY062031.1 126013 .. 126271 (259 bp)  
CH003453.1 55636193 .. 55636439 (247 bp)  
CH003501.1 57507857 .. 57508103 (247 bp)  
 
Whole Genome Shotgun sequences (4)
AADD01070074.1 38467 .. 38713 (247 bp)  
AADC01060080.1 33799 .. 34045 (247 bp)  
AADB02010034.1 2693561 .. 2693809 (249 bp)  
ABBA01050507.1 260160 .. 260406 (247 bp)  
 

   Pan troglodytes
Name: D6S294
Polymorphism info:  

Cross References Help
Gene GeneID:462786
 Symbol:HCRTR2
 Description:hypocretin (orexin) receptor 2
 Position: 

Mapping InformationHelp
D6S294 Sequence Map: Chr 6 Map Viewer
  Position: 56530328-56530622 (bp)

Electronic PCR results Help
Genomic (1)
CM000320.1 56530328 .. 56530622 (295 bp)  
 
Whole Genome Shotgun sequences (2)
AADA01072402.1 8524 .. 8818 (295 bp)  
AACZ02072086.1 12118 .. 12412 (295 bp)  
 

 

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