proteins
| 88 proteins |
V | COG0732 | Restriction endonuclease S subunits | Help | |
|---|---|---|---|---|---|
| 0 from | query genome Pyrobaculum aerophilum (Thermoproteales | Thermoprotei) | ||||
| |||||
165 letters (r) 0
0 833 ||| 1 PAE3342 (165) 465
247 67 _ 255 YFL003c (878) COG0249 151
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAE3342
(165 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
PAE3342 325 2e-89
YFL003c 30 1.6
AF0602 30 2.7
DR0080 30 3.4
STM1385 29 5.0
MPN290 28 5.9
MPN089 28 6.8
YPR032w 28 6.9
STM2882 28 7.9
# >PAE3342
# Length = 165
#
# Score = 325 bits (833), Expect = 2e-89
# Identities = 165/165 (100%), Positives = 165/165 (100%)
#
# Query: 1 MRGYLVWRPDDFIKLLEVAVVYSVVSGKCDGEPKEPLVIAIPTPVGHIAITYWRGGCLPG 60
# MRGYLVWRPDDFIKLLEVAVVYSVVSGKCDGEPKEPLVIAIPTPVGHIAITYWRGGCLPG
# Sbjct: 1 MRGYLVWRPDDFIKLLEVAVVYSVVSGKCDGEPKEPLVIAIPTPVGHIAITYWRGGCLPG 60
#
# Query: 61 GGRAATPLESSIYAPCVKKCIEETFGSLLDPLKSFATELLAYREALKTIDLFAYKDGVFY 120
# GGRAATPLESSIYAPCVKKCIEETFGSLLDPLKSFATELLAYREALKTIDLFAYKDGVFY
# Sbjct: 61 GGRAATPLESSIYAPCVKKCIEETFGSLLDPLKSFATELLAYREALKTIDLFAYKDGVFY 120
#
# Query: 121 AVEVKTNSGKLRDSQVEKAVILKKWLKPLVVRVYLQNPLVEIKQQ 165
# AVEVKTNSGKLRDSQVEKAVILKKWLKPLVVRVYLQNPLVEIKQQ
# Sbjct: 121 AVEVKTNSGKLRDSQVEKAVILKKWLKPLVVRVYLQNPLVEIKQQ 165
#
#
# >YFL003c
# Length = 878
#
# Score = 30.4 bits (67), Expect = 1.6
# Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
#
# Query: 82 EETFGSLLDPLKSFATELLAYREALKTIDL---FAYK-DGVFYAVEVKTNSGKLRDSQVE 137
# EET LLD + + +EL EA+ +DL F Y Y + + TN+ +RDS
# Sbjct: 547 EETVDELLDKIATHISELFMIAEAVAILDLVCSFTYNLKENNYTIPIFTNNLLIRDS--- 603
#
# Query: 138 KAVILKKWLKPLV 150
# + +L+K LK V
# Sbjct: 604 RHPLLEKVLKNFV 616
#
#
# >AF0602
# Length = 396
#
# Score = 29.6 bits (65), Expect = 2.7
# Identities = 13/34 (38%), Positives = 22/34 (64%)
#
# Query: 74 APCVKKCIEETFGSLLDPLKSFATELLAYREALK 107
# AP + ++ + S+L+P +F +ELL YR+ LK
# Sbjct: 225 APVILSGLQNSSYSILNPANAFESELLKYRKNLK 258
#
#
# >DR0080
# Length = 353
#
# Score = 29.6 bits (65), Expect = 3.4
# Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
#
# Query: 91 PLKSFATELLAYREALK---TIDLFAYKDGVFYAVEVKTNSG-KLRDSQVEKAVILKKWL 146
# PL + L+ + +L+ T D+ Y+ G T G R+ + A L++W+
# Sbjct: 83 PLSGLSLALVFEKASLRTRTTFDVGMYQLGGHAITLSNTEIGLGTRERVSDVARNLERWV 142
#
# Query: 147 KPLVVRVYLQNPLVEIKQ 164
# ++ RVYLQ LVE+ Q
# Sbjct: 143 DGVMGRVYLQQTLVELAQ 160
#
#
# >STM1385
# Length = 250
#
# Score = 28.9 bits (63), Expect = 5.0
# Identities = 14/44 (31%), Positives = 23/44 (51%), Gaps = 2/44 (4%)
#
# Query: 68 LESSIYAPCVKKCI--EETFGSLLDPLKSFATELLAYREALKTI 109
# LE+ + CV+ C+ G + DP AT L +R+A+K +
# Sbjct: 172 LEAGLLPACVESCVGGARIIGDIKDPHSRIATMLHQHRDAIKVL 215
#
#
# >MPN290
# Length = 145
#
# Score = 28.5 bits (62), Expect = 5.9
# Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
#
# Query: 49 AITYWRGGCLPGGGRAATPLESSIYAPCVKKCIEETFGSLLDPLKSFATEL 99
# AI + + G G A E I+ P +KK ++ ++LDPL SF T+L
# Sbjct: 58 AIKFKKQGSATGQLTVAQFKEYGIHVPSLKK--QKEIAAILDPLYSFFTDL 106
#
#
# >MPN089
# Length = 335
#
# Score = 28.5 bits (62), Expect = 6.8
# Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
#
# Query: 49 AITYWRGGCLPGGGRAATPLESSIYAPCVKKCIEETFGSLLDPLKSFATEL 99
# AI + + G G A E I+ P +KK ++ ++LDPL SF T+L
# Sbjct: 252 AIKFKKQGSATGQLTVAQFKEYGIHVPSLKK--QKEIAAILDPLYSFFTDL 300
#
#
# >YPR032w
# Length = 1033
#
# Score = 28.5 bits (62), Expect = 6.9
# Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
#
# Query: 94 SFATELLAYREALKTID--LFAYKDGVFYAVEVKTNSGKL 131
# SFA E L +++T D LF Y+ FY+VE + SG L
# Sbjct: 555 SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDL 594
#
#
# >STM2882
# Length = 685
#
# Score = 28.1 bits (61), Expect = 7.9
# Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
#
# Query: 63 RAATPLESSIYAPCVKKCIEETFGSLLDPL-KSFATELL--AYREALKTIDL 111
# + +T L P + CIE FG LDPL +S T L+ A +A++ +D+
# Sbjct: 173 KLSTNLVMQEVMPYIASCIEHNFGCTLDPLTRSNLTHLVDKAAAKAVEALDM 224
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.321 0.141 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,742,033
Number of Sequences: 192987
Number of extensions: 788035
Number of successful extensions: 1678
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1672
Number of HSP's gapped (non-prelim): 13
length of query: 165
length of database: 59,019,183
effective HSP length: 101
effective length of query: 64
effective length of database: 39,527,496
effective search space: 2529759744
effective search space used: 2529759744
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
S2: 61 (28.1 bits)