Reference SNP(refSNP) Cluster Report: rs2711224

Reference SNP(refSNP) Cluster Report: rs2711224

refSNP ID: rs2711224
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	100/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_198097.2:c.522+32C>G
NT_007819.16:g.6350838G>C

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss3831129 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2711224 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss3831129	SC_JCM\|AC079882.3_195045	fwd/B	C/G	atatttctctaagaacctgatgaatgctta	taaagttataaatgaaattcaaaatactta	09/25/01	10/10/03	100	Genomic	unknown
ss6511802	WI_SSAHASNP\|NT_007819.11_6157550	fwd/B	C/G	atatttctctaaaaacctgatgaatgctta	taaagttataaatgaaattcaaaatactta	02/12/03	10/10/03	111	Genomic	unknown
ss10389765	BCM_SSAHASNP\|chr7.NT_007819.13_6157553	fwd/B	C/G	atatttctctaaaaacctgatgaatgctta	taaagttataaatgaaattcaaaatactta	06/29/03	10/10/03	117	Genomic	unknown
ss14540947	WUGSC_SSAHASNP\|chr7.NT_007819.14_6157553	fwd/B	C/G	atatttctctaaaaacctgatgaatgctta	taaagttataaatgaaattcaaaatactta	11/05/03	11/22/03	120	Genomic	unknown
ss85956200	HGSV\|Cor18956_SNV_20070510.chr7_6635120	fwd/	C/G	atatttctctaaaaacctgatgaatgctta	taaagttataaatgaaattcaaaatactta	11/30/07	12/10/07	130	Genomic	unknown

Fasta sequence (Legend)

 GACCCCGGGC AAACGCAGGA AGTCTGCCTT ACACCACAGC TGGAGGGAAG GTTCCAGAGC
 ACACGCCTCA TGCTTTCCTC GCTGCTCCAG TTTTGCGACG GTCTGTCTCA GGCTCTTTGC
 CACTTTCAAG TTCTGGGTTT TTTGTAGATA AGAAACAAAC TTGTCTGTCT ATATTTCTCT
 AAGAACCTGA TGAATGCTTA
 S
 TAAAGTTATA AATGAAATTC AAAATACTTA CCCGATGGAA GAATTTCTCT AATCTTTCTT
 TCAGAAGCTT GACGCCTCCG TCTTCCATGG CTTTCAGAAA TGTACCATTA AAAAGCTAGT
 GAGGTAAAAG ATTGCAGAAA AAAAAATCAG TTTCCTATGC TCACTTTTTC AGTATAACAA
 GTTCTTTTTT TCCTTTAGAT

GeneView

GeneView via analysis of contig annotation: C7orf28B chromosome 7 open reading frame 28B

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_007819->NM_198097

function

HuRef

NW_001839003->XM_001720226

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_007819->NM_198097->NP_932765	6350838	reverse	intron

HuRef	NW_001839003->XM_001720226->XP_001720278	551310	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs2711224 maps exactly once on NCBI human chromosome 7

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
7	NW_001839003.1	551310	6708085	plus	C	alt_assembly_8	HuRef	HuRef	view	200
7	NT_007819.16	6350838	6828405	plus	G	ref_assembly	reference	reference	view	200
7	NW_923240.1	2755	6831890	plus	C	alt_assembly_1	Celera	Celera	view	200
7	NT_079592.2	6858918	6908918	plus	G	alt_assembly_2	CRA_TCAGchr7v2	CRA_TCAGchr7v2	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
NT_007819 AC004983

dbSNP Blast Analysis

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

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Revised: May 25, 2006 1:38 PM .