R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 651 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|10178006|dbj|BAB11458.1| (AB005233) contains similarity to 40S ribosomal
protein S10~gene_id:MBK23.4 [Arabidopsis thaliana]
Length = 180
Frame 3 hits (HSPs): ________________________
Frame 2 hits (HSPs): ___________________ ______
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 180
0 50 100 150
Plus Strand HSPs:
Score = 319 (112.3 bits), Expect = 3.9e-54, Sum P(3) = 3.9e-54
Identities = 60/68 (88%), Positives = 65/68 (95%), Frame = +2
Query: 2 FNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSE 178
FNL +HP I+ VPNLQVIKLMQSFKS+EYVRETFAWMHYYWFLTN+GI+FLRTYLNLPSE
Sbjct: 27 FNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSE 86
Query: 179 IVPATLKK 202
IVPATLKK
Sbjct: 87 IVPATLKK 94
Score = 221 (77.8 bits), Expect = 3.9e-54, Sum P(3) = 3.9e-54
Identities = 46/73 (63%), Positives = 53/73 (72%), Frame = +3
Query: 174 PKLSLPLS-RKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGD 350
P +P + +KQ KP GRPFGG GDRPRGPPR DGERRFG DRDGYRGGP+ GG++GD
Sbjct: 84 PSEIVPATLKKQQKPLGRPFGGG-GDRPRGPPRGDGERRFG-DRDGYRGGPKS-GGEYGD 140
Query: 351 KGGSSC*LQAFFWG 392
K G+ Q F G
Sbjct: 141 KAGAPADYQPGFRG 154
Score = 63 (22.2 bits), Expect = 1.2e-37, Sum P(3) = 1.2e-37
Identities = 11/15 (73%), Positives = 12/15 (80%), Frame = +1
Query: 361 APADYRPSFGGGPGG 405
APADY+P F GG GG
Sbjct: 144 APADYQPGFRGGAGG 158
Score = 58 (20.4 bits), Expect = 3.9e-54, Sum P(3) = 3.9e-54
Identities = 11/21 (52%), Positives = 15/21 (71%), Frame = +2
Query: 407 RPGFGRGSGGYGAPTX-SNIP 466
R GFGRG+GG+G S++P
Sbjct: 160 RQGFGRGAGGFGGGAAGSDLP 180
Score = 58 (20.4 bits), Expect = 3.9e-32, Sum P(2) = 3.9e-32
Identities = 24/70 (34%), Positives = 28/70 (40%), Frame = +3
Query: 180 LSLPLSRKQAKPAGRPFGGPP---GDRP--RGPPRFDGER--RFGGDRD---GYRGGPRG 329
L P +P G P G GDR RG P+ GE + G D G+RGG G
Sbjct: 99 LGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGPKSGGEYGDKAGAPADYQPGFRGGAGG 158
Query: 330 PGGDFGDKGG 359
FG G
Sbjct: 159 ARQGFGRGAG 168
>gi|8953720|dbj|BAA98083.1| (AB025606) contains similarity to 40S ribosomal
protein S10~gene_id:F6N7.14 [Arabidopsis thaliana]
Length = 181
Frame 3 hits (HSPs): __________________
Frame 2 hits (HSPs): ________________________ ______
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 181
0 50 100 150
Plus Strand HSPs:
Score = 346 (121.8 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 65/87 (74%), Positives = 73/87 (83%), Frame = +2
Query: 2 FNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEI 181
FNLAKHP IDVPNLQVIKLMQSFKS+EYVRETFAWMHYYWFLTN+GIEFLRTYLNLPS++
Sbjct: 27 FNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDV 86
Query: 182 VPATLKKAGQARRKTIRWPTR*SPQGP 262
VPATLKK+ + + P +GP
Sbjct: 87 VPATLKKSAKPGGRPFGGPPGDRSRGP 113
Score = 196 (69.0 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 41/63 (65%), Positives = 46/63 (73%), Frame = +3
Query: 198 RKQAKPAGRPFGGPPGDRPRGPPRFDGER-RFGGDRDGYRGGPRGPGGDFG-DKGGSSC* 371
+K AKP GRPFGGPPGDR RGP G+R RFG DRDGYR GPR GG+FG +KGG+
Sbjct: 92 KKSAKPGGRPFGGPPGDRSRGPRHEGGDRPRFG-DRDGYRAGPRA-GGEFGGEKGGAPAD 149
Query: 372 LQAFF 386
Q F
Sbjct: 150 YQPSF 154
Score = 62 (21.8 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 12/20 (60%), Positives = 15/20 (75%), Frame = +2
Query: 413 GFGRGSGGYGA--PTXSNIP 466
GFGRG+GGY A P+ S +P
Sbjct: 162 GFGRGAGGYSAAAPSGSGLP 181
Score = 49 (17.2 bits), Expect = 2.0e-39, Sum P(3) = 2.0e-39
Identities = 11/17 (64%), Positives = 12/17 (70%), Frame = +1
Query: 361 APADYRPSF---GGGPG 402
APADY+PSF G G G
Sbjct: 146 APADYQPSFQVNGSGRG 162
>gi|7440314|pir||T04228 ribosomal protein S10, cytosolic - Arabidopsis thaliana
>gi|4539292|emb|CAB39595.1| (AL049480) putative ribosomal protein
S10 [Arabidopsis thaliana] >gi|7269424|emb|CAB81384.1| (AL161563)
putative ribosomal protein S10 [Arabidopsis thaliana]
Length = 177
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): _________________________ _______
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 177
0 50 100 150
Plus Strand HSPs:
Score = 341 (120.0 bits), Expect = 6.5e-36, Sum P(2) = 6.5e-36
Identities = 64/87 (73%), Positives = 72/87 (82%), Frame = +2
Query: 2 FNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEI 181
FNL KHP IDVPNLQVIKLMQSFKS+EYVRETFAWMHYYWFLTN+GIEFLRTYLNLPS++
Sbjct: 27 FNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDV 86
Query: 182 VPATLKKAGQARRKTIRWPTR*SPQGP 262
VPATLKK+ + + P +GP
Sbjct: 87 VPATLKKSAKPGGRPFGGPPGDRQRGP 113
Score = 223 (78.5 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 47/71 (66%), Positives = 51/71 (71%), Frame = +3
Query: 198 RKQAKPAGRPFGGPPGDRPRGPPRFDGER-RFGGDRDGYRGGPRGPGGDFGDKGGSSC*L 374
+K AKP GRPFGGPPGDR RGPPR DG+R RFG DRDGYRGGPRG GD +KGG+
Sbjct: 92 KKSAKPGGRPFGGPPGDRQRGPPRSDGDRPRFG-DRDGYRGGPRG--GD--EKGGAPADF 146
Query: 375 QAFFWGWSWRKG 410
Q F G R G
Sbjct: 147 QPSFQGGGGRPG 158
Score = 72 (25.3 bits), Expect = 6.5e-36, Sum P(2) = 6.5e-36
Identities = 14/22 (63%), Positives = 16/22 (72%), Frame = +2
Query: 407 RPGFGRGSGGYGA--PTXSNIP 466
RPGFGRG+GGY A P+ S P
Sbjct: 156 RPGFGRGAGGYSAAAPSGSGFP 177
Score = 40 (14.1 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
Identities = 13/24 (54%), Positives = 15/24 (62%), Frame = +1
Query: 361 APADYRPSF-GGG--PG------G 405
APAD++PSF GGG PG G
Sbjct: 142 APADFQPSFQGGGGRPGFGRGAGG 165
>gi|12246885|dbj|BAB21002.1| (AB054123) ribosomal protein S10 [Oryza sativa]
Length = 183
Frame 3 hits (HSPs): _______________________
Frame 2 hits (HSPs): ________________________ _______
Frame 1 hits (HSPs): ____
Frame -2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
Plus Strand HSPs:
Score = 316 (111.2 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 60/88 (68%), Positives = 70/88 (79%), Frame = +2
Query: 2 FNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEI 181
+NLAKHP+IDVPNLQVIK MQSFKS+EYVRETF+W +YYW+LTNDGIE L YLNLPSEI
Sbjct: 27 YNLAKHPQIDVPNLQVIKFMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLLNYLNLPSEI 86
Query: 182 VPATLKKAGQARRKTI-RWPTR*SPQGP 262
VPATLKK+ + + P P+GP
Sbjct: 87 VPATLKKSARPPGRPFGSGPPGDRPRGP 114
Score = 237 (83.4 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 50/82 (60%), Positives = 58/82 (70%), Frame = +3
Query: 174 PKLSLPLS-RKQAKPAGRPFG-GPPGDRPRGPPRFDGER-RFGGDRDGYRGGPRGPGGDF 344
P +P + +K A+P GRPFG GPPGDRPRGPPRF+G+R RFG DRDGYRGGPRG GDF
Sbjct: 83 PSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDRPRFG-DRDGYRGGPRGAPGDF 141
Query: 345 G-DKGGSSC*LQAFFWGWSWRKG 410
G +KGG+ Q F R G
Sbjct: 142 GGEKGGAPAEFQPSFRSSGGRPG 164
Score = 66 (23.2 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
Identities = 14/21 (66%), Positives = 17/21 (80%), Frame = +2
Query: 407 RPGFGRGSGG-YGA-PTXSNI 463
RPGFGRG GG +GA PT S++
Sbjct: 162 RPGFGRGGGGGFGAGPTSSSM 182
Score = 38 (13.4 bits), Expect = 1.0e-29, Sum P(2) = 1.0e-29
Identities = 7/10 (70%), Positives = 7/10 (70%), Frame = +1
Query: 376 RPSFGGGPGG 405
RP FG G GG
Sbjct: 162 RPGFGRGGGG 171
Minus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.51, P = 0.40
Identities = 30/70 (42%), Positives = 32/70 (45%), Frame = -2
Query: 358 PPLSP--KSPPG--PRGPPRYPSRSPPNLLSPSKRGGPLGRSPG---GPPNGLPAGLA-C 203
PP P PPG PRGPPR+ P RGGP G +PG G G PA
Sbjct: 97 PPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRG-APGDFGGEKGGAPAEFQPS 155
Query: 202 FLESG-RDNFG 173
F SG R FG
Sbjct: 156 FRSSGGRPGFG 166
>gi|7293606|gb|AAF48978.1| (AE003512) CG14206 gene product [Drosophila
melanogaster]
Length = 158
Frame 3 hits (HSPs): _____________
Frame 2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | 158
0 50 100 150
Plus Strand HSPs:
Score = 259 (91.2 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
Identities = 52/87 (59%), Positives = 66/87 (75%), Frame = +2
Query: 2 FNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSE 178
F+ KHPE++ +PNL VIK MQS SR V+E FAW HYYW+LTN+GIE LR+YL+LP E
Sbjct: 25 FHAQKHPELESIPNLHVIKAMQSLHSRGLVKEQFAWRHYYWYLTNEGIEELRSYLHLPPE 84
Query: 179 IVPATLKKAGQARRKTIR-WPTR*SPQGP 262
IVP+TLK+ AR +T+R P P+GP
Sbjct: 85 IVPSTLKRP--ARSETVRPRPAVGGPRGP 111
Score = 62 (21.8 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
Identities = 19/41 (46%), Positives = 21/41 (51%), Frame = +3
Query: 249 RPR---GPPRFDGER-RFGGDRDGYRGGPRGPGGDF-GDKG 356
RPR G PR G+ + G DR YR P G G D GD G
Sbjct: 100 RPRPAVGGPRGPGDASKTGEDRSAYRRAPGGSGVDKKGDVG 140
>gi|4506679 ref|NP_001005.1| ribosomal protein S10 [Homo sapiens] >gi|11526401
ref|XP_004330.1| ribosomal protein S10 [Homo sapiens]
>gi|1173177|sp|P46783|RS10_HUMAN 40S RIBOSOMAL PROTEIN S10
>gi|1362933|pir||S55918 ribosomal protein S10, cytosolic - human
>gi|550025|gb|AAA85660.1| (U14972) ribosomal protein S10 [Homo
sapiens] >gi|12654413|gb|AAH01032.1|AAH01032 (BC001032) ribosomal
protein S10 [Homo sapiens] >gi|1096944|prf||2113200G ribosomal
protein S10 [Homo sapiens]
Length = 165
Frame 3 hits (HSPs): __________________
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 165
0 50 100 150
Plus Strand HSPs:
Score = 242 (85.2 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 43/70 (61%), Positives = 58/70 (82%), Frame = +2
Query: 5 NLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPS 175
++ KHPE+ +VPNL V+K MQS KSR YV+E FAW H+YW+LTN+GI++LR YL+LP
Sbjct: 28 HMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPP 87
Query: 176 EIVPATLKKA 205
EIVPATL+++
Sbjct: 88 EIVPATLRRS 97
Score = 59 (20.8 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 22/63 (34%), Positives = 33/63 (52%), Frame = +3
Query: 174 PKLSLPLSRKQAKP-AGRPFG-GPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFG 347
P++ +P + ++++P GRP G G+RP R GE DRD YR PG D
Sbjct: 87 PEI-VPATLRRSRPETGRPRPKGLEGERPARLTR--GE----ADRDTYRRSAVPPGADKK 139
Query: 348 DKGGS 362
+ G+
Sbjct: 140 AEAGA 144
>gi|9581772|emb|CAC00525.1| (AL118502) bA371L19.2 (novel protein similar to 40S
ribosomal protein S10 (RPS10)) [Homo sapiens]
Length = 176
Frame 3 hits (HSPs): ___________________
Frame 2 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | 176
0 50 100 150
Plus Strand HSPs:
Score = 222 (78.1 bits), Expect = 5.5e-22, Sum P(2) = 5.5e-22
Identities = 41/67 (61%), Positives = 53/67 (79%), Frame = +2
Query: 5 NLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPS 175
++ KHPE+ +VPNL V+K MQS KSR V+E FAW H+YW+LTN+G ++LR YL+LP
Sbjct: 28 HMPKHPELADKNVPNLHVMKAMQSLKSRGCVKEQFAWRHFYWYLTNEGSQYLRDYLHLPP 87
Query: 176 EIVPATL 196
EIVPATL
Sbjct: 88 EIVPATL 94
Score = 220 (77.4 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 53/108 (49%), Positives = 68/108 (62%), Frame = +2
Query: 5 NLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPS 175
++ KHPE+ +VPNL V+K MQS KSR V+E FAW H+YW+LTN+G ++LR YL+LP
Sbjct: 28 HMPKHPELADKNVPNLHVMKAMQSLKSRGCVKEQFAWRHFYWYLTNEGSQYLRDYLHLPP 87
Query: 176 EIVPATLKKAGQARRKTI---RWPT-R*SPQG-----PTSL*RREEIR 292
EIVPATL + T+ R T R P+G P L RRE R
Sbjct: 88 EIVPATLHLPPEIVPATLHRSRPETGRPRPKGLEGKRPARLTRREADR 135
Score = 58 (20.4 bits), Expect = 5.5e-22, Sum P(2) = 5.5e-22
Identities = 23/67 (34%), Positives = 32/67 (47%), Frame = +3
Query: 162 STFH-PKLSLPLSRKQAKP-AGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPG 335
+T H P +P + +++P GRP P G + P R RR DRD YR PG
Sbjct: 92 ATLHLPPEIVPATLHRSRPETGRP--RPKGLEGKRPARLT--RR-EADRDTYRRCSVPPG 146
Query: 336 GDFGDKGGS 362
D + G+
Sbjct: 147 ADKKAEAGA 155
>gi|3688432|emb|CAA09747.1| (AJ011705) 40S ribosomal protein S10 [Lumbricus
rubellus]
Length = 156
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | 156
0 50 100 150
Plus Strand HSPs:
Score = 248 (87.3 bits), Expect = 3.9e-20, P = 3.9e-20
Identities = 47/77 (61%), Positives = 58/77 (75%), Frame = +2
Query: 2 FNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEI 181
F+L KH EIDVPNL VI+ MQS SR YV+E F W HYYW+L N+GI++LR +L+LP EI
Sbjct: 27 FHLPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEI 86
Query: 182 VPATLKKAGQARRKTIR 232
VPATLK+ Q R + R
Sbjct: 87 VPATLKR--QTRPEAAR 101
>gi|133715|sp|P09900|RS10_RAT 40S RIBOSOMAL PROTEIN S10 >gi|70936|pir||R3RT10
ribosomal protein S10, cytosolic [validated] - rat
>gi|57127|emb|CAA31901.1| (X13549) ribosomal protein S10 (AA 1-165)
[Rattus norvegicus]
Length = 165
Frame 2 hits (HSPs): __________________________
Annotated Domains: ________________________________ _________________
__________________________________________________
Database sequence: | | | | | 165
0 50 100 150
__________________
Annotated Domains:
PRODOM PD006662: RS10(5) 1..104
PRODOM PD020398: RS10(3) O77302(1) 112..164
__________________
Plus Strand HSPs:
Score = 245 (86.2 bits), Expect = 8.2e-20, P = 8.2e-20
Identities = 49/85 (57%), Positives = 66/85 (77%), Frame = +2
Query: 5 NLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPS 175
++ KHPE+ +VPNL V+K MQS KSR YV+E FAW H+YW+LTN+GI++LR YL+LP
Sbjct: 28 HMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPP 87
Query: 176 EIVPATLKKAGQARRKTIRWPTR*SPQG 259
EIVPATL+++ R +T R P P+G
Sbjct: 88 EIVPATLRRS---RPETGR-PRPKGPEG 111
>gi|6094144|sp|O14112|RS10_SCHPO 40S RIBOSOMAL PROTEIN S10
>gi|7489964|pir||T38634 40s ribosomal protein S10 - fission yeast
(Schizosaccharomyces pombe) >gi|2388968|emb|CAB11701.1| (Z98979)
40s ribosomal protein s10. [Schizosaccharomyces pombe]
Length = 144
Frame 2 hits (HSPs): _______________________
Frame 1 hits (HSPs): _____
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 144
0 50 100
__________________
Annotated Domains:
PRODOM PD006662: RS10(5) 1..100
PRODOM PD030216: O13614(1) RS10(1) 102..142
__________________
Plus Strand HSPs:
Score = 217 (76.4 bits), Expect = 8.6e-20, Sum P(2) = 8.6e-20
Identities = 39/67 (58%), Positives = 52/67 (77%), Frame = +2
Query: 2 FNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEI 181
FNL KHPE+ VPNLQVIK QS SR Y++ + W +Y+ LTN+G+E+LR YL+LP+E+
Sbjct: 27 FNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEV 86
Query: 182 VPATLKK 202
VPAT K+
Sbjct: 87 VPATHKR 93
Score = 42 (14.8 bits), Expect = 8.6e-20, Sum P(2) = 8.6e-20
Identities = 8/14 (57%), Positives = 10/14 (71%), Frame = +1
Query: 361 APADYRPSFGGGPG 402
AP+ + PSF GG G
Sbjct: 128 APSGFAPSFRGGFG 141
>gi|585934|sp|Q07254|RS10_XENLA 40S RIBOSOMAL PROTEIN S10
>gi|2119079|pir||I51194 ribosomal protein S10, cytosolic - African
clawed frog >gi|301829|gb|AAA14676.1| (S57432) 40S ribosomal small
subunit protein S10 [Xenopus laevis, splenocytes, Peptide, 165 aa]
Length = 165
Frame 2 hits (HSPs): _______________________________
Annotated Domains: ________________________________ _________________
__________________________________________________
Database sequence: | | | | | 165
0 50 100 150
__________________
Annotated Domains:
PRODOM PD006662: RS10(5) 1..104
PRODOM PD020398: RS10(3) O77302(1) 112..164
__________________
Plus Strand HSPs:
Score = 244 (85.9 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 53/102 (51%), Positives = 73/102 (71%), Frame = +2
Query: 5 NLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPS 175
++ KHPE+ +VPNL V+K MQS KSR YV+E FAW H+YW+LTN+GI++LR +L+LP
Sbjct: 28 HMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPP 87
Query: 176 EIVPATLKKA----GQARRKTIRW--PTR*SPQGPTSL*RREEIRR 295
EIVPATL+++ G+ R K + P R P+G T R+ RR
Sbjct: 88 EIVPATLRRSRPETGRPRPKGLEGERPPR-LPRGETD---RDTYRR 129
>gi|2257506|dbj|BAA21402.1| (AB004535) similar to S.cerevisiae chromosome XV
reading frame ORF YOR293w: GenBank ACC# Z75201 [Schizosaccharomyces
pombe]
Length = 147
Frame 2 hits (HSPs): ________________________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 217 (76.4 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 39/67 (58%), Positives = 52/67 (77%), Frame = +2
Query: 2 FNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEI 181
FNL KHPE+ VPNLQVIK QS SR Y++ + W +Y+ LTN+G+E+LR YL+LP+E+
Sbjct: 27 FNLPKHPEVGVPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEV 86
Query: 182 VPATLKK 202
VPAT K+
Sbjct: 87 VPATHKR 93
Score = 41 (14.4 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 8/14 (57%), Positives = 9/14 (64%), Frame = +1
Query: 361 APADYRPSFGGGPG 402
AP + PSF GG G
Sbjct: 129 APGGFAPSFRGGFG 142
>gi|6226049|sp|O77082|RS10_DICDI 40S RIBOSOMAL PROTEIN S10
>gi|3649604|gb|AAC64694.1| (AF049896) 40S ribosomal protein S10;
RS10 [Dictyostelium discoideum] >gi|3776534|gb|AAC64786.1|
(AF095643) 40S ribosomal protein S10 [Dictyostelium discoideum]
Length = 154
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | 154
0 50 100 150
Plus Strand HSPs:
Score = 236 (83.1 bits), Expect = 7.3e-19, P = 7.3e-19
Identities = 43/73 (58%), Positives = 60/73 (82%), Frame = +2
Query: 2 FNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSE 178
F+LAKHP+I+ V NL V+++++SFKSR++V ETF W +YYW LT +GI++LRTYL +P
Sbjct: 28 FHLAKHPQIETVSNLDVLQILRSFKSRKFVTETFNWQYYYWVLTEEGIKYLRTYLQVPES 87
Query: 179 IVPATLKKAGQARR 220
+VPAT+KK QA R
Sbjct: 88 VVPATMKK--QASR 99
>gi|7301612|gb|AAF56731.1| (AE003761) BcDNA:LD32148 gene product [Drosophila
melanogaster]
Length = 163
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 163
0 50 100 150
Plus Strand HSPs:
Score = 236 (83.1 bits), Expect = 7.3e-19, P = 7.3e-19
Identities = 49/85 (57%), Positives = 61/85 (71%), Frame = +2
Query: 8 LAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIV 184
+ KH E+D +PNLQVIK+MQS SR +V+E FAW H+YW LTN+GIE LR YL+LP EIV
Sbjct: 29 IQKHSELDKIPNLQVIKVMQSLNSRGWVKEQFAWRHFYWLLTNEGIEELRRYLHLPPEIV 88
Query: 185 PATLKKAGQARRKTIRWPTR*SPQGP 262
P+TL + R +R P R P GP
Sbjct: 89 PSTLTQT--TRSNAVR-P-RGGPGGP 110
>gi|7498074|pir||T30925 hypothetical protein D1007.6 - Caenorhabditis elegans
>gi|2088803|gb|AAB54223.1| (AF003151) Similar to 40S ribosomal
protein S10; coded for by C. elegans cDNA yk80h1.3; coded for by C.
elegans cDNA yk109e2.3; coded for by C. elegans cDNA yk109h10.3;
coded for by C. elegans cDNA yk110e7.3; coded for by C. elegans
cDNA yk80h1.5; code>
Length = 149
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | 149
0 50 100
Plus Strand HSPs:
Score = 216 (76.0 bits), Expect = 9.7e-17, P = 9.7e-17
Identities = 41/67 (61%), Positives = 51/67 (76%), Frame = +2
Query: 2 FNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSE 178
FN HP I+ V NL+VIK ++S SRE V+E FAW HYYW+LT+ GI +LR YL LP+E
Sbjct: 27 FNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQFAWRHYYWYLTDAGILYLREYLALPAE 86
Query: 179 IVPATLK 199
IVPAT+K
Sbjct: 87 IVPATIK 93
>gi|6578737|gb|AAF18069.1|AF188009_1 (AF188009) plectin isoform plec 1 [Mus
musculus]
Length = 214
Frame 2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 214
0 50 100 150 200
Plus Strand HSPs:
Score = 209 (73.6 bits), Expect = 5.3e-16, P = 5.3e-16
Identities = 38/63 (60%), Positives = 50/63 (79%), Frame = +2
Query: 17 HPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPAT 193
HP + V NLQV++ M S K+R VRETFAW H+YW+LTN+GI+ LR YL+LP EIVPA+
Sbjct: 37 HPHVPGVTNLQVMRAMASLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPAS 96
Query: 194 LKK 202
L++
Sbjct: 97 LQR 99
>gi|6323886 ref|NP_013957.1| Ribosomal protein S10B; Rps10bp [Saccharomyces
cerevisiae] >gi|1176558|sp|P46784|RS1B_YEAST 40S RIBOSOMAL PROTEIN
S10-B >gi|1362397|pir||S57597 ribosomal protein S10.e.B, cytosolic
- yeast (Saccharomyces cerevisiae) >gi|887611|emb|CAA90201.1|
(Z49939) unknown [Saccharomyces cerevisiae]
Length = 105
Frame 2 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | | | 105
0 20 40 60 80 100
Plus Strand HSPs:
Score = 206 (72.5 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 39/79 (49%), Positives = 54/79 (68%), Frame = +2
Query: 2 FNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEI 181
FN AKH EID NL VIK +QS S+ YV+ F+W +YY+ LT +G+E+LR YLNLP I
Sbjct: 27 FNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHI 86
Query: 182 VPAT-LKKAGQARRKTIRW 235
VP T +++ ++R R+
Sbjct: 87 VPGTYIQERNPSQRPQRRY 105
>gi|6324867 ref|NP_014936.1| Ribosomal protein S10A; Rps10ap [Saccharomyces
cerevisiae] >gi|2500493|sp|Q08745|RS1A_YEAST 40S RIBOSOMAL PROTEIN
S10-A >gi|2119080|pir||S67197 ribosomal protein S10.e.A, cytosolic
- yeast (Saccharomyces cerevisiae) >gi|1420650|emb|CAA99521.1|
(Z75201) ORF YOR293w [Saccharomyces cerevisiae]
Length = 105
Frame 2 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | | | 105
0 20 40 60 80 100
Plus Strand HSPs:
Score = 205 (72.2 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 39/79 (49%), Positives = 53/79 (67%), Frame = +2
Query: 2 FNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEI 181
FN AKH EID NL VIK +QS S+ YV+ F+W +YY+ LT +G+E+LR YLNLP I
Sbjct: 27 FNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYTLTEEGVEYLREYLNLPEHI 86
Query: 182 VPAT-LKKAGQARRKTIRW 235
VP T +++ +R R+
Sbjct: 87 VPGTYIQERNPTQRPQRRY 105
>gi|3088338|dbj|BAA25817.1| (AB007151) ribosomal protein S10 [Homo sapiens]
Length = 78
Frame 2 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | 78
0 20 40 60
Plus Strand HSPs:
Score = 198 (69.7 bits), Expect = 7.8e-15, P = 7.8e-15
Identities = 35/58 (60%), Positives = 47/58 (81%), Frame = +2
Query: 5 NLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNL 169
++ KHPE+ +VPNL V+K MQS KSR YV+E FAW H+YW+LTN+GI++LR YL+L
Sbjct: 21 HMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHL 78
>gi|6578735|gb|AAF18068.1|AF188008_1 (AF188008) plectin isoform plec 1,2alpha
[Mus musculus]
Length = 964
Frame 2 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 964
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 209 (73.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 38/63 (60%), Positives = 50/63 (79%), Frame = +2
Query: 17 HPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPAT 193
HP + V NLQV++ M S K+R VRETFAW H+YW+LTN+GI+ LR YL+LP EIVPA+
Sbjct: 37 HPHVPGVTNLQVMRAMASLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPAS 96
Query: 194 LKK 202
L++
Sbjct: 97 LQR 99
>gi|1709655|sp|P30427|PLE1_RAT PLECTIN 1 >gi|7428788|pir||A39638 plectin - rat
>gi|1561642|emb|CAA42169.1| (X59601) plectin [Rattus norvegicus]
Length = 4687
Frame 2 hits (HSPs): __
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | | | | 4687
0 500 1000 1500 2000 2500 3000 3500 4000 4500
__________________
Annotated Domains:
DOMO DM04264: 1..110
DOMO DM00325: ALPHA-ACTININACTIN-BINDINGDOMAI 179..405
DOMO DM05319: HEPTADREPEATPATTERNREPEAT 568..1938
DOMO DM03363: 1940..2001
DOMO DM07862: 2003..2084
DOMO DM03363: 2086..2146
DOMO DM03363: 2148..2209
DOMO DM07862: 2309..2387
DOMO DM03363: 2418..2478
DOMO DM00688: 2823..2899
DOMO DM00688: 2901..2976
DOMO DM02893: 2978..3149
DOMO DM00688: 3151..3227
DOMO DM00688: 3229..3304
DOMO DM02893: 3306..3480
DOMO DM00688: 3482..3558
DOMO DM00688: 3560..3635
DOMO DM02893: 3637..3815
DOMO DM00688: 3817..3893
DOMO DM00688: 3895..3970
DOMO DM02893: 3972..4059
DOMO DM00688: 4061..4136
DOMO DM00688: 4138..4213
DOMO DM02893: 4215..4363
DOMO DM00688: 4408..4481
DOMO DM00688: 4483..4558
Entrez Domain: GLOBULAR. 1..4687
Entrez Domain: CENTRAL FIBROUS ROD DOMAIN R. 1..2648
Entrez Domain: R1 COILED COIL. 1..1474
Entrez Domain: R2 COILED COIL. 1475..2648
Entrez Domain: R2-A SUBDOMAIN (POTENTIAL). 1475..1686
Entrez Domain: R2-B SUBDOMAIN (POTENTIAL). 1727..1927
Entrez Domain: R2-C SUBDOMAIN (POTENTIAL). 1967..2124
Entrez Domain: R2-D SUBDOMAIN (POTENTIAL). 2298..2489
Entrez Domain: R2-E SUBDOMAIN (POTENTIAL). 2490..2648
Entrez Repetitive region: HEPTAD REPEAT PATTERN 1284..1358
Entrez Repetitive region: HEPTAD REPEAT PATTERN 1377..1434
Entrez Repetitive region: HEPTAD REPEAT PATTERN 1476..1686
Entrez Domain: INTERACTION WITH VIMENTIN AND LA 1727..1897
Entrez Domain: HELICAL (POTENTIAL). 2218..2268
Entrez Domain: GLOBULAR. 2786..4620
Entrez Domain: 6 X TANDEM REPEATS OF MOTIF A. 2786..4620
Entrez Repetitive region: MOTIF A (APPROXIMATE) 2786..3113
Entrez Repetitive region: MOTIF A (APPROXIMATE) 3114..3444
Entrez Repetitive region: MOTIF A (APPROXIMATE) 3445..3779
Entrez Repetitive region: MOTIF A (APPROXIMATE) 3780..4024
Entrez Repetitive region: MOTIF A (APPROXIMATE) 4025..4367
Entrez Repetitive region: MOTIF A (APPROXIMATE) 4368..4620
Entrez Domain: 6 X 19 AA REPEATS. 2845..4597
Entrez Repetitive region: 1. 2845..3015
Entrez Repetitive region: 2. 3173..3343
Entrez Repetitive region: 3. 3504..3674
Entrez Repetitive region: 4. 3839..4008
Entrez Repetitive region: 5. 4082..4252
Entrez Repetitive region: 6. 4427..4597
Entrez Domain: 4 X 4 AA TANDEM REPEATS OF G-S-R 4628..4643
Entrez Domain: SER-RICH. 4645..4687
PFAM CH: Calponin homology (CH) domain 185..288
PFAM CH: Calponin homology (CH) domain 301..406
PFAM Plectin_repeat: Plectin repeat 2791..2828
PFAM Plectin_repeat: Plectin repeat 2829..2873
PFAM Plectin_repeat: Plectin repeat 2874..2911
PFAM Plectin_repeat: Plectin repeat 2943..2987
PFAM Plectin_repeat: Plectin repeat 3119..3156
PFAM Plectin_repeat: Plectin repeat 3157..3194
PFAM Plectin_repeat: Plectin repeat 3195..3239
PFAM Plectin_repeat: Plectin repeat 3271..3315
PFAM Plectin_repeat: Plectin repeat 3488..3532
PFAM Plectin_repeat: Plectin repeat 3533..3570
PFAM Plectin_repeat: Plectin repeat 3602..3646
PFAM Plectin_repeat: Plectin repeat 3823..3860
PFAM Plectin_repeat: Plectin repeat 3861..3905
PFAM Plectin_repeat: Plectin repeat 3937..3981
PFAM Plectin_repeat: Plectin repeat 4066..4110
PFAM Plectin_repeat: Plectin repeat 4111..4148
PFAM Plectin_repeat: Plectin repeat 4180..4224
PFAM Plectin_repeat: Plectin repeat 4275..4315
PFAM Plectin_repeat: Plectin repeat 4415..4455
PFAM Plectin_repeat: Plectin repeat 4456..4493
PFAM Plectin_repeat: Plectin repeat 4525..4569
PRODOM PD006662: RS10(5) 5..111
PRODOM PD037802: PLEC(1) Q15149(1) 114..179
PRODOM PD001855: AACT(3) SPCB(3) DMD(3) 181..271
PRODOM PD000807: AACT(3) SPCB(3) DMD(3) 274..403
PRODOM PD025638: PLEC(1) Q15149(1) Q16640(1) 405..549
PRODOM PD148213: 551..713
PRODOM PD211500: PLEC_RAT 715..735
PRODOM PD000002: MYSP(25) MYSA(19) INVO(17) 737..915
PRODOM PD005097: Q92817(2) 917..1240
PRODOM PD000002: MYSP(25) MYSA(19) INVO(17) 1249..1433
PRODOM PD018568: PLEC(1) Q15149(1) Q16640(1) 1435..1480
PRODOM PD000002: MYSP(25) MYSA(19) INVO(17) 1484..1688
PRODOM PD000002: MYSP(25) MYSA(19) INVO(17) 1701..1961
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 1984..2112
PRODOM PD000002: MYSP(25) MYSA(19) INVO(17) 2118..2357
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2361..2504
PRODOM PD000002: MYSP(25) MYSA(19) INVO(17) 2506..2743
PRODOM PD023231: PLEC(1) Q15149(1) Q16640(1) 2745..2836
PRODOM PD002907: PLEC(6) Q15149(6) Q16640(6) 2838..3030
PRODOM PD005808: PLEC(3) Q15149(3) Q16640(3) 3033..3120
PRODOM PD188333: PLEC(1) Q15149(1) Q16640(1) 3122..3161
PRODOM PD002907: PLEC(6) Q15149(6) Q16640(6) 3163..3357
PRODOM PD005808: PLEC(3) Q15149(3) Q16640(3) 3359..3451
PRODOM PD002907: PLEC(6) Q15149(6) Q16640(6) 3453..3687
PRODOM PD005808: PLEC(3) Q15149(3) Q16640(3) 3696..3757
PRODOM PD191116: PLEC(1) Q16640(1) 3773..3827
PRODOM PD002907: PLEC(6) Q15149(6) Q16640(6) 3829..4017
PRODOM PD013631: PLEC(1) Q15149(1) Q16640(1) 4019..4067
PRODOM PD002907: PLEC(6) Q15149(6) Q16640(6) 4069..4243
PRODOM PD008380: 4245..4377
PRODOM PD002907: PLEC(6) Q15149(6) Q16640(6) 4415..4615
PRODOM PD023230: PLEC(1) Q15149(1) Q16640(1) 4617..4656
__________________
Plus Strand HSPs:
Score = 209 (73.6 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 38/63 (60%), Positives = 50/63 (79%), Frame = +2
Query: 17 HPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPAT 193
HP + V NLQV++ M S K+R VRETFAW H+YW+LTN+GI+ LR YL+LP EIVPA+
Sbjct: 37 HPHVPGVTNLQVMRAMTSLKARGLVRETFAWCHFYWYLTNEGIDHLRQYLHLPPEIVPAS 96
Query: 194 LKK 202
L++
Sbjct: 97 LQR 99
>gi|5052676|gb|AAD38668.1|AF145693_1 (AF145693) BcDNA.LD32148 [Drosophila
melanogaster]
Length = 117
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 117
0 50 100
Plus Strand HSPs:
Score = 180 (63.4 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 38/68 (55%), Positives = 46/68 (67%), Frame = +2
Query: 59 MQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPATLKKAGQARRKTIRWP 238
MQS SR +V+E FAW H+YW LTN+GIE LR YL+LP EIVP+TL + R +R P
Sbjct: 1 MQSLNSRGWVKEQFAWRHFYWLLTNEGIEELRRYLHLPPEIVPSTLTQT--TRSNAVR-P 57
Query: 239 TR*SPQGP 262
R P GP
Sbjct: 58 -RGGPGGP 64
>gi|1296662|emb|CAA91196.1| (Z54367) plectin [Homo sapiens]
Length = 4684
Frame 2 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | | | | | | 4684
0 500 1000 1500 2000 2500 3000 3500 4000 4500
Plus Strand HSPs:
Score = 194 (68.3 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 42/86 (48%), Positives = 57/86 (66%), Frame = +2
Query: 17 HPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWFLTNDGIEFLRTYLNLPSEIVPAT 193
HP + V NLQV++ M S ++R VRETFAW H++W+LTN+GI LR YL+LP EIV A+
Sbjct: 37 HPHVPGVTNLQVMRAMASLRARGLVRETFAWCHFFWYLTNEGIAHLRQYLHLPPEIVAAS 96
Query: 194 LKKAGQARRKTIRWPTR*SP-----QGP 262
L++ R + P R +P QGP
Sbjct: 97 LQRV--RRPVAMVMPARRTPHVQAVQGP 122
>gi|1705993|sp|P25050|COLL_HSVS7 COLLAGEN-LIKE PROTEIN
>gi|331029|gb|AAA46152.1| (M31964) collagen-like protein
[Saimiriine herpesvirus 2]
Length = 105
Frame -1 hits (HSPs): _______
Frame -2 hits (HSPs): ____________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | | 105
0 20 40 60 80 100
__________________
Annotated Domains:
DOMO DM00042: FIBRILLARCOLLAGENCARBOXYL-TERMI 1..100
Entrez Domain: COLLAGEN-LIKE. 15..70
PFAM Collagen: Collagen triple helix repeat ( 15..74
PRODOM PD000540: H1(18) O76786(11) TONB(10) 10..69
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 76..97
__________________
Minus Strand HSPs:
Score = 99 (34.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 26/50 (52%), Positives = 30/50 (60%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGP-PNGLPAGL 209
PP P+ PPGP+GPP P + PP P GP G PG P P+GLP GL
Sbjct: 31 PP-GPQGPPGPQGPPG-P-QGPPGPQGPPGPQGPPG-PPGPPGPSGLP-GL 76
Score = 95 (33.4 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 24/50 (48%), Positives = 28/50 (56%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLPAGL 209
PP P+ PPGP+GPP P + PP P GP G P GPP P+GL
Sbjct: 31 PP-GPQGPPGPQGPPG-P-QGPPGPQGPPGPQGPPG--PPGPPG--PSGL 73
Score = 73 (25.7 bits), Expect = 2.4, P = 0.91
Identities = 22/48 (45%), Positives = 24/48 (50%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLPAG 212
P P PPGP+GPP P + PP P GP G P GPP P G
Sbjct: 19 PQGPPGPPGPQGPPG-P-QGPPG---PQ---GPPG--PQGPPG--PQG 54
Score = 45 (15.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 8/15 (53%), Positives = 9/15 (60%), Frame = -1
Query: 422 DRSQAFPPGPPPKEG 378
DR PPGPP +G
Sbjct: 16 DRGPQGPPGPPGPQG 30
>gi|116896|sp|P22576|COLL_HSVSC COLLAGEN-LIKE PROTEIN >gi|93187|pir||B34770
ORF2 protein - saimiriine herpesvirus 1 (strain 488)
>gi|331007|gb|AAA72929.1| (M55264) [DHFR] gene products [Saimiriine
herpesvirus 2]
Length = 102
Frame -1 hits (HSPs): ________
Frame -2 hits (HSPs): _______________________________
Frame -3 hits (HSPs): _____________
Annotated Domains: ________________________________________
__________________________________________________
Database sequence: | | | | | | | 102
0 20 40 60 80 100
__________________
Annotated Domains:
Entrez Domain: COLLAGEN-LIKE. 15..71
PFAM Collagen: Collagen triple helix repeat ( 15..74
PRODOM PD000540: H1(18) O76786(11) TONB(10) 19..67
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 73..94
__________________
Minus Strand HSPs:
Score = 99 (34.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 26/50 (52%), Positives = 28/50 (56%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLPAGL 209
PP P+ PPGP+GPP P PP P GP G P GPP GLP GL
Sbjct: 31 PP-GPQGPPGPQGPPGPPG--PPGPPGPPGPPGPPG--PPGPP-GLP-GL 73
Score = 87 (30.6 bits), Expect = 0.011, P = 0.011
Identities = 23/47 (48%), Positives = 25/47 (53%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLP 218
PP P PPGP+GPP P + PP P GP G P GPP G P
Sbjct: 19 PP-GPPGPPGPQGPPG-P-QGPPGPQGPPGPPGPPG--PPGPP-GPP 59
Score = 67 (23.6 bits), Expect = 0.13, Sum P(2) = 0.12
Identities = 14/26 (53%), Positives = 14/26 (53%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLL 281
PP P PPGP GPP P NLL
Sbjct: 55 PP-GPPGPPGPPGPPGLPGLFVTNLL 79
Score = 45 (15.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 8/15 (53%), Positives = 9/15 (60%), Frame = -1
Query: 422 DRSQAFPPGPPPKEG 378
DR PPGPP +G
Sbjct: 16 DRGPPGPPGPPGPQG 30
Score = 41 (14.4 bits), Expect = 0.33, Sum P(2) = 0.28
Identities = 9/24 (37%), Positives = 11/24 (45%), Frame = -3
Query: 447 GAP*PPEPRPKPGLSARTTPKRRP 376
G P PP P+ PG P+ P
Sbjct: 21 GPPGPPGPQGPPGPQGPPGPQGPP 44
>gi|1743282|emb|CAA67871.1| (X99519) StpC484 [Saimiriine herpesvirus 2]
Length = 102
Frame 3 hits (HSPs): ______________________________
Frame -1 hits (HSPs): ________
Frame -2 hits (HSPs): _______________________________
Frame -3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | 102
0 20 40 60 80 100
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 6.2, P = 1.0
Identities = 25/61 (40%), Positives = 28/61 (45%), Frame = +3
Query: 174 PKLSLPLSRKQAK-PAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRG--GPRGPGGDF 344
P L P+ + P G P GPPG P+GPP G G G G GP GP G
Sbjct: 5 PNLRYPIEETGDRGPPGPP--GPPG--PQGPPGPQGPPGPAGP-PGPPGPPGPPGPPGPP 59
Query: 345 GDKG 356
G G
Sbjct: 60 GPPG 63
Minus Strand HSPs:
Score = 97 (34.1 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 26/50 (52%), Positives = 27/50 (54%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLPAGL 209
PP P+ PPGP GPP P PP P GP G P GPP GLP GL
Sbjct: 31 PP-GPQGPPGPAGPPGPPG--PPGPPGPPGPPGPPG--PPGPP-GLP-GL 73
Score = 88 (31.0 bits), Expect = 0.0082, P = 0.0081
Identities = 23/47 (48%), Positives = 25/47 (53%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLP 218
PP P PPGP+GPP P + PP P GP G P GPP G P
Sbjct: 19 PP-GPPGPPGPQGPPG-P-QGPPGPAGPPGPPGPPG--PPGPP-GPP 59
Score = 67 (23.6 bits), Expect = 0.13, Sum P(2) = 0.12
Identities = 14/26 (53%), Positives = 14/26 (53%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLL 281
PP P PPGP GPP P NLL
Sbjct: 55 PP-GPPGPPGPPGPPGLPGLFVTNLL 79
Score = 45 (15.8 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 8/15 (53%), Positives = 9/15 (60%), Frame = -1
Query: 422 DRSQAFPPGPPPKEG 378
DR PPGPP +G
Sbjct: 16 DRGPPGPPGPPGPQG 30
Score = 39 (13.7 bits), Expect = 0.52, Sum P(2) = 0.41
Identities = 9/24 (37%), Positives = 10/24 (41%), Frame = -3
Query: 447 GAP*PPEPRPKPGLSARTTPKRRP 376
G P PP P+ PG P P
Sbjct: 21 GPPGPPGPQGPPGPQGPPGPAGPP 44
>gi|1743279|emb|CAA67869.1| (X99518) StpC139 [Saimiriine herpesvirus 2]
Length = 99
Frame -1 hits (HSPs): _____
Frame -2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | 99
0 20 40 60 80
Minus Strand HSPs:
Score = 92 (32.4 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 25/49 (51%), Positives = 29/49 (59%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGP-PNGLPAGL 209
P P+ PPGP+GPP P + PP P GP G PG P P+GLP GL
Sbjct: 28 PQGPQGPPGPQGPPG-P-QGPPGPPGPP---GPQG-PPGPPGPSGLP-GL 70
Score = 91 (32.0 bits), Expect = 0.0037, P = 0.0037
Identities = 25/50 (50%), Positives = 30/50 (60%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLG-RSPGGPP--NGLPAGL 209
PP P+ P GP+GPP P + PP P GP G + P GPP +GLP GL
Sbjct: 22 PP-GPQGPQGPQGPPG-P-QGPPGPQGPPGPPGPPGPQGPPGPPGPSGLP-GL 70
Score = 61 (21.5 bits), Expect = 4.8, Sum P(2) = 0.99
Identities = 13/26 (50%), Positives = 14/26 (53%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLL 281
PP P+ PPGP GP P NLL
Sbjct: 52 PP-GPQGPPGPPGPSGLPGLFVTNLL 76
Score = 39 (13.7 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 6/9 (66%), Positives = 7/9 (77%), Frame = -1
Query: 404 PPGPPPKEG 378
PPGPP +G
Sbjct: 19 PPGPPGPQG 27
>gi|539667|pir||D40750 proline-rich protein PRB1/2S (EA) - human (fragment)
Length = 117
Frame 3 hits (HSPs): __________________________
Frame -1 hits (HSPs): ____
Frame -2 hits (HSPs): _____________________________________________
__________________________________________________
Database sequence: | | | | 117
0 50 100
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 7.3, P = 1.0
Identities = 24/60 (40%), Positives = 32/60 (53%), Frame = +3
Query: 195 SRKQAKPAGRPFGGPP--GDRPRGPPRFDGERRF----GGDR-DGYR--GGPRGPG--GD 341
SR P G+P G PP G++P+GPP G+ + GG+R G G P+GP GD
Sbjct: 53 SRSPRSPPGKPQGPPPQGGNQPQGPPSPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGD 112
Minus Strand HSPs:
Score = 86 (30.3 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 24/52 (46%), Positives = 26/52 (50%), Frame = -2
Query: 349 SPKSPPG-PRGPPRYPSRSPPNLLSP-SKRGGPL---GRSPGGPPN-GLPAG 212
SP+SPPG P+GPP P SP K GP G P GPP G P G
Sbjct: 55 SPRSPPGKPQGPPPQGGNQPQGPPSPPGKPQGPPPQGGNRPQGPPPPGKPQG 106
Score = 81 (28.5 bits), Expect = 0.0073, Sum P(2) = 0.0073
Identities = 24/54 (44%), Positives = 27/54 (50%), Frame = -2
Query: 349 SPKSPPG-PRGPP----RYPSR--SPPNL-LSPSKRGG--PLGRSPGGPPNGLP 218
SP+SPPG P+GPP P SPP P +GG P G P G P G P
Sbjct: 55 SPRSPPGKPQGPPPQGGNQPQGPPSPPGKPQGPPPQGGNRPQGPPPPGKPQGPP 108
Score = 80 (28.2 bits), Expect = 0.012, Sum P(2) = 0.012
Identities = 23/60 (38%), Positives = 27/60 (45%), Frame = -2
Query: 391 PQKKACSQQELPPLSPKSPPGPRGPPRYPSRSPPNL-LSPSKRGGPLGRSPGGPPNGLPA 215
PQ Q PP P+ PP P+G RSPP P +GG + P PP G P
Sbjct: 28 PQGGNKPQGPPPPGKPQGPP-PQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPSPP-GKPQ 85
Query: 214 G 212
G
Sbjct: 86 G 86
Score = 80 (28.2 bits), Expect = 0.53, P = 0.41
Identities = 22/53 (41%), Positives = 23/53 (43%), Frame = -2
Query: 355 PLSPKSPPG-PRGPPRYPSRSPPNLLSPSKRGGP-----LGRSPGGPPNGLPAG 212
P P PPG P+GPP P P K GP RSP PP G P G
Sbjct: 13 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPP-GKPQG 65
Score = 76 (26.8 bits), Expect = 0.087, Sum P(2) = 0.083
Identities = 18/56 (32%), Positives = 22/56 (39%), Frame = -2
Query: 391 PQKKACSQQELPPLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNG 224
P+ Q PP P GP PP P PP + + P G+ G PP G
Sbjct: 56 PRSPPGKPQGPPPQGGNQPQGPPSPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQG 111
Score = 69 (24.3 bits), Expect = 1.6, Sum P(2) = 0.79
Identities = 18/46 (39%), Positives = 20/46 (43%), Frame = -2
Query: 355 PLSPKSPPG-PRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLP 218
P P SPPG P+GPP P P G P G P G + P
Sbjct: 74 PQGPPSPPGKPQGPPPQGGNRPQG---PPPPGKPQGPPPQGDKSRSP 117
Score = 38 (13.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 6/9 (66%), Positives = 7/9 (77%), Frame = -1
Query: 404 PPGPPPKEG 378
P GPPP+ G
Sbjct: 23 PQGPPPQGG 31
>gi|7303080|gb|AAF58147.1| (AE003811) CG8157 gene product [Drosophila
melanogaster]
Length = 113
Frame 3 hits (HSPs): ____________________________________
Frame 2 hits (HSPs): _____ __________
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 113
0 50 100
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 23/48 (47%), Positives = 27/48 (56%), Frame = +3
Query: 219 GRPFGGPPGDRPRGPPRFDGERRFGGDRDGY--RGG-PRGPGGDFGDKGG 359
G FGG G GP + G+ FGG GY +GG GPGG FG +GG
Sbjct: 44 GPGFGGQ-GGFGGGPGEYGGQGGFGGGPGGYGGQGGFGGGPGG-FGGQGG 91
Score = 75 (26.4 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
Identities = 23/56 (41%), Positives = 30/56 (53%), Frame = +3
Query: 192 LSRKQAKPAGRP-FGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGG 359
L+R Q P G+ FGG G G F G FGG + G+ GGP G++G +GG
Sbjct: 15 LARPQFGPGGQGGFGGQQGGFG-GQGGFGGGPGFGG-QGGFGGGP----GEYGGQGG 65
Score = 72 (25.3 bits), Expect = 0.10, Sum P(2) = 0.097
Identities = 22/52 (42%), Positives = 24/52 (46%), Frame = +3
Query: 219 GRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRG------GPRGPGGDFGDKGG 359
G FGG G GP + G+ FGG GY G GP G GG G GG
Sbjct: 44 GPGFGGQ-GGFGGGPGEYGGQGGFGGGPGGYGGQGGFGGGPGGFGGQGGFGGG 95
Score = 46 (16.2 bits), Expect = 0.013, Sum P(2) = 0.013
Identities = 8/10 (80%), Positives = 8/10 (80%), Frame = +2
Query: 413 GFGRGSGGYG 442
GFG G GGYG
Sbjct: 65 GFGGGPGGYG 74
Score = 44 (15.5 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
Identities = 9/16 (56%), Positives = 10/16 (62%), Frame = +1
Query: 364 PADY--RPSFGGGPGG 405
P Y + FGGGPGG
Sbjct: 70 PGGYGGQGGFGGGPGG 85
Score = 43 (15.1 bits), Expect = 8.6e-05, Sum P(3) = 8.6e-05
Identities = 7/10 (70%), Positives = 8/10 (80%), Frame = +2
Query: 413 GFGRGSGGYG 442
GFG G GG+G
Sbjct: 91 GFGGGQGGFG 100
Score = 42 (14.8 bits), Expect = 0.033, Sum P(2) = 0.032
Identities = 7/10 (70%), Positives = 8/10 (80%), Frame = +2
Query: 413 GFGRGSGGYG 442
GFG G GG+G
Sbjct: 78 GFGGGPGGFG 87
>gi|1079080|pir||S49195 GCR 20 protein - fruit fly (Drosophila melanogaster)
>gi|510504|emb|CAA51651.1| (X73134) GCR 20 [Drosophila
melanogaster]
Length = 127
Frame 3 hits (HSPs): ________________________________
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 127
0 50 100
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 25/57 (43%), Positives = 31/57 (54%), Frame = +3
Query: 189 PLSRKQAKPAGRPFGGPPGDRPRGPPR-FDGERRFGGDRDGYRGGPRGPGGDFGDKGG 359
P++ +QA+ G FGGP G GP F G+ GG G GG G GG FG +GG
Sbjct: 40 PVAARQARQFGGGFGGPGGGFG-GPGGGFGGQ---GGGFGGPGGGFGGQGGGFGGQGG 93
Score = 88 (31.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 24/57 (42%), Positives = 29/57 (50%), Frame = +3
Query: 189 PLSRKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGG 359
P++ +QA+ G FGGP G F G GG G GG GPGG FG +GG
Sbjct: 40 PVAARQARQFGGGFGGPGGG-------FGGP---GGGFGGQGGGFGGPGGGFGGQGG 86
Score = 85 (29.9 bits), Expect = 0.20, P = 0.18
Identities = 23/49 (46%), Positives = 24/49 (48%), Frame = +3
Query: 219 GRPFGGPPGDRPRGPPRFDGERRFGGDRDGYR--GGPRGPGGDFGDKGG 359
G FGGP G F G+ FGG G R GG GPGG FG GG
Sbjct: 71 GGGFGGPGGGFGGQGGGFGGQGGFGGGGFGGRPGGGFGGPGGGFGGPGG 119
Score = 43 (15.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 9/16 (56%), Positives = 10/16 (62%), Frame = +2
Query: 407 RPG--FGRGSGGYGAP 448
RPG FG GG+G P
Sbjct: 102 RPGGGFGGPGGGFGGP 117
Score = 40 (14.1 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 8/13 (61%), Positives = 9/13 (69%), Frame = +2
Query: 413 GFG-RGSGGYGAP 448
GFG R GG+G P
Sbjct: 98 GFGGRPGGGFGGP 110
>gi|7299780|gb|AAF54959.1| (AE003701) CG9757 gene product [Drosophila
melanogaster]
Length = 127
Frame 3 hits (HSPs): ________________________________
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 127
0 50 100
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 25/57 (43%), Positives = 31/57 (54%), Frame = +3
Query: 189 PLSRKQAKPAGRPFGGPPGDRPRGPPR-FDGERRFGGDRDGYRGGPRGPGGDFGDKGG 359
P++ +QA+ G FGGP G GP F G+ GG G GG G GG FG +GG
Sbjct: 40 PVAARQARQFGGGFGGPGGGFG-GPGGGFGGQ---GGGFGGPGGGFGGQGGGFGGQGG 93
Score = 88 (31.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 24/57 (42%), Positives = 29/57 (50%), Frame = +3
Query: 189 PLSRKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGG 359
P++ +QA+ G FGGP G F G GG G GG GPGG FG +GG
Sbjct: 40 PVAARQARQFGGGFGGPGGG-------FGGP---GGGFGGQGGGFGGPGGGFGGQGG 86
Score = 85 (29.9 bits), Expect = 0.20, P = 0.18
Identities = 23/49 (46%), Positives = 24/49 (48%), Frame = +3
Query: 219 GRPFGGPPGDRPRGPPRFDGERRFGGDRDGYR--GGPRGPGGDFGDKGG 359
G FGGP G F G+ FGG G R GG GPGG FG GG
Sbjct: 71 GGGFGGPGGGFGGQGGGFGGQGGFGGGGFGGRPGGGFGGPGGGFGGPGG 119
Score = 43 (15.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 9/16 (56%), Positives = 10/16 (62%), Frame = +2
Query: 407 RPG--FGRGSGGYGAP 448
RPG FG GG+G P
Sbjct: 102 RPGGGFGGPGGGFGGP 117
Score = 40 (14.1 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 8/13 (61%), Positives = 9/13 (69%), Frame = +2
Query: 413 GFG-RGSGGYGAP 448
GFG R GG+G P
Sbjct: 98 GFGGRPGGGFGGP 110
>gi|7296169|gb|AAF51462.1| (AE003588) CG13947 gene product [Drosophila
melanogaster]
Length = 119
Frame 3 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | 119
0 50 100
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.0013, P = 0.0013
Identities = 26/57 (45%), Positives = 32/57 (56%), Frame = +3
Query: 189 PLSRKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRG-PGGDFGDKGG 359
P Q P G P GGP G P+G P+ G + GG + G +GGP+G PGG G GG
Sbjct: 26 PQGGPQGGPQGGPQGGPQGG-PQGGPQ-GGPQ--GGPQGGPQGGPQGGPGGP-GGPGG 78
Score = 92 (32.4 bits), Expect = 0.0029, P = 0.0029
Identities = 25/57 (43%), Positives = 31/57 (54%), Frame = +3
Query: 189 PLSRKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRG-PGGDFGDKGG 359
P Q P G P GGP G P+G P+ G + GG + G +GGP+G P G G GG
Sbjct: 22 PQGGPQGGPQGGPQGGPQGG-PQGGPQ-GGPQ--GGPQGGPQGGPQGGPQGGPGGPGG 75
Score = 88 (31.0 bits), Expect = 0.0083, P = 0.0082
Identities = 23/58 (39%), Positives = 33/58 (56%), Frame = +3
Query: 186 LPLSRKQAKPAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGG 359
+ ++ Q P G P GGP G P+G P+ G + GG + G +GGP+G G G +GG
Sbjct: 13 IAVAAAQGGPQGGPQGGPQGG-PQGGPQ-GGPQ--GGPQGGPQGGPQG-GPQGGPQGG 65
>gi|2146880|pir||S53786 collagen alpha chain - lugworm (fragment)
Length = 126
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | 126
0 50 100
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.0017, P = 0.0017
Identities = 31/80 (38%), Positives = 35/80 (43%), Frame = +3
Query: 123 SSPTMELSSLGLTSTFHPKLSLPLSRKQAKPAGRPF-GGPPGDRPRGP-PRFDGERRFGG 296
S P E G P+ LP R A P G P GG PG+R G P G G
Sbjct: 3 SGPAGERGGPGDRGEIGPR-GLPGERGPAGPTGDPGEGGKPGERGEGGLPGAQGLIGLPG 61
Query: 297 DRDGYRG-GPRGPGGDFGDKG 356
+R G GP G GDFG +G
Sbjct: 62 ERGPGGGIGPXGERGDFGPRG 82
Score = 85 (29.9 bits), Expect = 0.18, P = 0.17
Identities = 35/89 (39%), Positives = 37/89 (41%), Frame = +3
Query: 123 SSPTMELSSLGLTSTFHPKLSLPLSRKQAKPAGRPF-GGPPGDRPRG--PPR-----FDG 278
S P E G P+ LP R A P G P GG PG+R G P G
Sbjct: 3 SGPAGERGGPGDRGEIGPR-GLPGERGPAGPTGDPGEGGKPGERGEGGLPGAQGLIGLPG 61
Query: 279 ERRFGGD--RDGYRG--GPRGPGGDFGDKG 356
ER GG G RG GPRG GD G G
Sbjct: 62 ERGPGGGIGPXGERGDFGPRGKEGDAGKDG 91
>gi|71417|pir||CGBEHS collagen-like protein - saimiriine herpesvirus 1 (strain
484-77)
Length = 99
Frame 3 hits (HSPs): __________________________________
Frame -1 hits (HSPs): ________
Frame -2 hits (HSPs): ____________________________
Frame -3 hits (HSPs): ____________
Annotated Domains: ____________________________
__________________________________________________
Database sequence: | | | | | | 99
0 20 40 60 80
__________________
Annotated Domains:
Entrez region: collagen-like 15..70
__________________
Plus Strand HSPs:
Score = 69 (24.3 bits), Expect = 5.7, P = 1.0
Identities = 26/67 (38%), Positives = 31/67 (46%), Frame = +3
Query: 174 PKLSLPLSRKQAK-PAGRPFGGPPGDR----PRGPPRFDGERRFGGDRDGYRG--GPRGP 332
P L P + P G P GPPG + P+GPP G G G +G GP+GP
Sbjct: 5 PNLRYPTEETGDRGPQGPP--GPPGPQGPPGPQGPPGPQGPPGPQGP-PGPQGPPGPQGP 61
Query: 333 GGDFGDKGGS 362
G G G S
Sbjct: 62 PGPPGPPGPS 71
Minus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.0029, P = 0.0029
Identities = 23/47 (48%), Positives = 27/47 (57%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLG-RSPGGPPNGLP 218
PP P+ PPGP+GPP P + PP P GP G + P GPP G P
Sbjct: 25 PP-GPQGPPGPQGPPG-P-QGPPGPQGPPGPQGPPGPQGPPGPP-GPP 68
Score = 87 (30.6 bits), Expect = 0.011, P = 0.011
Identities = 22/48 (45%), Positives = 24/48 (50%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLPAG 212
P P PPGP+GPP P + PP P GP G P GPP P G
Sbjct: 19 PQGPPGPPGPQGPPG-P-QGPPGPQGPPGPQGPPG--PQGPPG--PQG 60
Score = 73 (25.7 bits), Expect = 0.40, P = 0.33
Identities = 22/48 (45%), Positives = 24/48 (50%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLPAG 212
P P PPGP+GPP P + PP P GP G P GPP P G
Sbjct: 19 PQGPPGPPGPQGPPG-P-QGPPG---PQ---GPPG--PQGPPG--PQG 54
Score = 64 (22.5 bits), Expect = 0.33, Sum P(2) = 0.28
Identities = 14/28 (50%), Positives = 17/28 (60%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLLSP 275
PP P+ PPGP+GPP P + PP P
Sbjct: 43 PP-GPQGPPGPQGPPG-P-QGPPGPPGP 67
Score = 60 (21.1 bits), Expect = 1.7, Sum P(2) = 0.83
Identities = 13/21 (61%), Positives = 14/21 (66%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRS 296
PP P+ PPGP GPP PS S
Sbjct: 55 PP-GPQGPPGPPGPPG-PSDS 73
Score = 45 (15.8 bits), Expect = 0.33, Sum P(2) = 0.28
Identities = 8/15 (53%), Positives = 9/15 (60%), Frame = -1
Query: 422 DRSQAFPPGPPPKEG 378
DR PPGPP +G
Sbjct: 16 DRGPQGPPGPPGPQG 30
Score = 41 (14.4 bits), Expect = 0.83, Sum P(2) = 0.56
Identities = 9/24 (37%), Positives = 11/24 (45%), Frame = -3
Query: 447 GAP*PPEPRPKPGLSARTTPKRRP 376
G P PP P+ PG P+ P
Sbjct: 21 GPPGPPGPQGPPGPQGPPGPQGPP 44
>gi|7497787|pir||T29295 hypothetical protein C50F7.8 - Caenorhabditis elegans
>gi|1118093|gb|AAA83303.1| (U41557) glycine-rich [Caenorhabditis
elegans]
Length = 111
Frame 3 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | 111
0 50 100
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.0029, P = 0.0029
Identities = 27/51 (52%), Positives = 27/51 (52%), Frame = +3
Query: 213 PAGRPFGGP--PGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGGSS 365
P GR GGP PG R G P G R GG GGP GPGG GD GSS
Sbjct: 19 PGGRLVGGPGGPGGRLVGGPGGPGGRLVGGP-----GGPGGPGGSDGD--GSS 64
Score = 82 (28.9 bits), Expect = 0.039, P = 0.039
Identities = 26/52 (50%), Positives = 27/52 (51%), Frame = +3
Query: 213 PAGRPFGGP--PGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKG-GSS 365
P GR GGP PG R G P G G D DG G GPG D G +G GSS
Sbjct: 30 PGGRLVGGPGGPGGRLVGGPGGPGGPG-GSDGDGSSDGSTGPG-DGGSEGLGSS 81
>gi|346646|pir||B44479 collagen alpha 1(XII) chain - mouse (fragment)
>gi|258834|gb|AAB23938.1| (S48406) alpha 1 (XII) collagen
{triple-helical domain COL2} [mice, Peptide Partial, 78 aa] [Mus
sp.]
Length = 78
Frame 3 hits (HSPs): _________________________________
Frame -2 hits (HSPs): ____________________________________________
Frame -3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 78
0 20 40 60
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 1.5, P = 0.77
Identities = 22/50 (44%), Positives = 26/50 (52%), Frame = +3
Query: 207 AKPAGRPFGGPPGDRPRGPPRFDGERRFG--GDRDGYRG--GPRGPGGDFGDK 353
A P R GPPG P+GPP G G++ G G GP GP G GD+
Sbjct: 29 APPGPRGDTGPPG--PQGPPGPQGPNGLSIPGEQ-GTPGLPGPPGPMGPPGDR 78
Minus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.051, P = 0.050
Identities = 27/66 (40%), Positives = 32/66 (48%), Frame = -2
Query: 391 PQKKACSQQELPPLSPK--SPPGPRGP--PRYPSRSP----PNLLS-PSKRGGP-LGRSP 242
P C+Q + P P +PPGPRG P P P PN LS P ++G P L P
Sbjct: 10 PNACTCTQDSVGPPGPPGPAPPGPRGDTGPPGPQGPPGPQGPNGLSIPGEQGTPGLPGPP 69
Query: 241 G--GPP 230
G GPP
Sbjct: 70 GPMGPP 75
Score = 62 (21.8 bits), Expect = 0.0030, Sum P(2) = 0.0030
Identities = 18/40 (45%), Positives = 22/40 (55%), Frame = -2
Query: 358 PPLSPKSPPGPRGPP--RYPS-RSPPNLLSPSKRGGPLGRSPG 239
PP P+ PPGP+GP P + P L P GP+G PG
Sbjct: 39 PP-GPQGPPGPQGPNGLSIPGEQGTPGLPGPP---GPMG-PPG 76
Score = 62 (21.8 bits), Expect = 6.8, P = 1.0
Identities = 23/57 (40%), Positives = 26/57 (45%), Frame = -2
Query: 391 PQKKACSQQELPPLSPK--SPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGL 221
P C+Q + P P +PPGPRG PP P GP G P GP NGL
Sbjct: 10 PNACTCTQDSVGPPGPPGPAPPGPRG-----DTGPPG---PQ---GPPG--PQGP-NGL 54
Score = 47 (16.5 bits), Expect = 0.0030, Sum P(2) = 0.0030
Identities = 11/23 (47%), Positives = 12/23 (52%), Frame = -3
Query: 456 EXVGAP*PPEPRPKPGLSARTTP 388
+ VG P PP P P PG T P
Sbjct: 18 DSVGPPGPPGPAP-PGPRGDTGP 39
>gi|91206|pir||D29149 proline-rich protein - mouse (fragment)
>gi|200543|gb|AAA40002.1| (M19419) proline-rich salivary protein
[Mus musculus]
Length = 188
Frame -2 hits (HSPs): _______________________________________________
Frame -3 hits (HSPs): ___________________ _____________
__________________________________________________
Database sequence: | | | | | 188
0 50 100 150
Minus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.0040, Sum P(2) = 0.0040
Identities = 19/48 (39%), Positives = 24/48 (50%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLPAG 212
P P+ PP P GP P++ P P + PL +P GPP G P G
Sbjct: 140 PRPPQGPPPPTGPQPRPTQGPHPTGGPQQTP-PLAGNPQGPPQGRPQG 186
Score = 91 (32.0 bits), Expect = 0.0054, Sum P(2) = 0.0054
Identities = 25/54 (46%), Positives = 27/54 (50%), Frame = -2
Query: 355 PLSPKSPPGPRGP-PRYPSRSPP-------NLLSPSKRGGPLGRSPGGPPNGLPAG 212
P P+ PP P GP PR P PP + SP GGP R P GPP PAG
Sbjct: 43 PKPPQGPPPPAGPQPRPPQGPPPTGGPQQRSPQSPPPPGGPQPRPPQGPPP--PAG 96
Score = 90 (31.7 bits), Expect = 0.0076, Sum P(2) = 0.0076
Identities = 27/60 (45%), Positives = 30/60 (50%), Frame = -2
Query: 391 PQKKACSQQELPPLSPKSPPGPRGPPRY--PSRSPPNLLSPSKRGGPLGRSPGGPPNGLP 218
PQ K Q PP P+ P P+GPP P + P SP GGP R P GPP P
Sbjct: 41 PQPKP-PQGPPPPAGPQPRP-PQGPPPTGGPQQRSPQ--SPPPPGGPQPRPPQGPPP--P 94
Query: 217 AG 212
AG
Sbjct: 95 AG 96
Score = 86 (30.3 bits), Expect = 0.025, Sum P(2) = 0.025
Identities = 24/54 (44%), Positives = 26/54 (48%), Frame = -2
Query: 391 PQKKACSQQELPP--LSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPP 230
PQ++ Q PP PK P GP PP P PP P GGP RSP PP
Sbjct: 27 PQQRP-PQGPPPPGGPQPKPPQGPP-PPAGPQPRPPQ--GPPPTGGPQQRSPQSPP 78
Score = 86 (30.3 bits), Expect = 0.98, P = 0.63
Identities = 21/48 (43%), Positives = 25/48 (52%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLPAG 212
P P+ PP P GP + P + PP P GGP + P GPP PAG
Sbjct: 15 PRPPQGPPPPGGPQQRPPQGPP---PP---GGPQPKPPQGPPP--PAG 54
Score = 84 (29.6 bits), Expect = 0.047, Sum P(2) = 0.046
Identities = 23/54 (42%), Positives = 27/54 (50%), Frame = -2
Query: 391 PQKKACSQQELPPLSPKSPPGPRGPP--RYPSRSPPNLLSPSKRGGPLGRSPGGPP 230
PQ++ Q PP P+ P P+GPP P PP P GGP RSP PP
Sbjct: 27 PQQRP-PQGPPPPGGPQPKP-PQGPPPPAGPQPRPPQ--GPPPTGGPQQRSPQSPP 78
Score = 82 (28.9 bits), Expect = 0.082, Sum P(2) = 0.079
Identities = 19/49 (38%), Positives = 22/49 (44%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNL-------LSPSKRGGPLGRSPGGPP 230
P P+ PP P GP P++ PP P GGP R P GPP
Sbjct: 85 PRPPQGPPPPAGPHPRPTQGPPPTGPQPRPTQGPPPTGGPQQRPPQGPP 133
Score = 78 (27.5 bits), Expect = 0.27, Sum P(2) = 0.24
Identities = 19/43 (44%), Positives = 22/43 (51%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRY--PSRSPPNLLSPSKRGGPLGRSPGGPP 230
PP P+ P +GPP P + PP P GGP R P GPP
Sbjct: 106 PPTGPQPRP-TQGPPPTGGPQQRPPQ--GPPPPGGPQPRPPQGPP 147
Score = 77 (27.1 bits), Expect = 0.36, Sum P(2) = 0.30
Identities = 22/52 (42%), Positives = 24/52 (46%), Frame = -2
Query: 349 SPKSPPGPRGPPRYPSRSPPNLLSPSKRG--GP--LGRSP----GGPPNGLP 218
SP+SPP P GP P + PP P R GP G P G PP G P
Sbjct: 73 SPQSPPPPGGPQPRPPQGPPPPAGPHPRPTQGPPPTGPQPRPTQGPPPTGGP 124
Score = 77 (27.1 bits), Expect = 0.36, Sum P(2) = 0.30
Identities = 21/58 (36%), Positives = 23/58 (39%), Frame = -2
Query: 367 QELPPLSPKSPPGPR-----GPPRYPSRSPPNLLSPSKRGGPLGRSP-GGPPNGLPAG 212
Q+ PP P P GP+ GPP P P GGP P G P G P G
Sbjct: 125 QQRPPQGPPPPGGPQPRPPQGPPPPTGPQPRPTQGPHPTGGPQQTPPLAGNPQGPPQG 182
Score = 46 (16.2 bits), Expect = 0.0040, Sum P(2) = 0.0040
Identities = 11/26 (42%), Positives = 14/26 (53%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRRP 376
G P P P+PRP G P++RP
Sbjct: 6 GQPPPGGPQPRPPQGPPPPGGPQQRP 31
Score = 44 (15.5 bits), Expect = 0.0065, Sum P(2) = 0.0064
Identities = 9/22 (40%), Positives = 12/22 (54%), Frame = -3
Query: 441 P*PPEPRPKPGLSARTTPKRRP 376
P P+PRP G P++RP
Sbjct: 107 PTGPQPRPTQGPPPTGGPQQRP 128
Score = 42 (14.8 bits), Expect = 0.010, Sum P(2) = 0.010
Identities = 12/25 (48%), Positives = 13/25 (52%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRRP 376
G P P P PRP G T P+ RP
Sbjct: 90 GPPPPAGPHPRPTQG-PPPTGPQPRP 114
Score = 42 (14.8 bits), Expect = 0.010, Sum P(2) = 0.010
Identities = 11/26 (42%), Positives = 13/26 (50%), Frame = -3
Query: 447 GAP*PPEPRPKP--GLSARTTPKRRP 376
G P P P+PKP G P+ RP
Sbjct: 34 GPPPPGGPQPKPPQGPPPPAGPQPRP 59
Score = 40 (14.1 bits), Expect = 0.016, Sum P(2) = 0.016
Identities = 9/22 (40%), Positives = 10/22 (45%), Frame = -3
Query: 441 P*PPEPRPKPGLSARTTPKRRP 376
P P+PRP G P RP
Sbjct: 80 PGGPQPRPPQGPPPPAGPHPRP 101
Score = 40 (14.1 bits), Expect = 0.016, Sum P(2) = 0.016
Identities = 10/25 (40%), Positives = 13/25 (52%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRR 379
G P P P+PRP G P++R
Sbjct: 48 GPPPPAGPQPRPPQGPPPTGGPQQR 72
Score = 38 (13.4 bits), Expect = 0.026, Sum P(2) = 0.026
Identities = 8/22 (36%), Positives = 12/22 (54%), Frame = -3
Query: 441 P*PPEPRPKPGLSARTTPKRRP 376
P PP+ +P PG + P + P
Sbjct: 1 PRPPQGQPPPG-GPQPRPPQGP 21
Score = 38 (13.4 bits), Expect = 0.026, Sum P(2) = 0.026
Identities = 8/22 (36%), Positives = 11/22 (50%), Frame = -3
Query: 441 P*PPEPRPKPGLSARTTPKRRP 376
P PP+ P PG + P+ P
Sbjct: 15 PRPPQGPPPPGGPQQRPPQGPP 36
>gi|7472746|pir||F75540 hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6457943|gb|AAF09854.1|AE001888_7 (AE001888) hypothetical
protein [Deinococcus radiodurans]
Length = 336
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | 336
0 150 300
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.0059, P = 0.0059
Identities = 30/51 (58%), Positives = 31/51 (60%), Frame = +3
Query: 231 GGPPGDRPRGP--PRFD-GERRFGGDRDGYRGG--PRGPGGDFG---DKGG 359
GG GDR RG PR D GER FGGDR G RGG PR G FG D+GG
Sbjct: 172 GGFGGDRDRGGFRPREDRGERSFGGDRGGDRGGFRPREDRGGFGGDRDRGG 222
Score = 105 (37.0 bits), Expect = 0.018, P = 0.018
Identities = 30/53 (56%), Positives = 31/53 (58%), Frame = +3
Query: 231 GGPPGDRPRGP--PRFD-GERRFGGDRDGYRGG-----PRGPGGDFGDK--GG 359
GG GDR RG PR D GER FGGDR G RGG PR G FGD+ GG
Sbjct: 212 GGFGGDRDRGGFRPREDRGERSFGGDRGGDRGGQGGFRPREDRGGFGDRDRGG 264
Score = 94 (33.1 bits), Expect = 0.36, P = 0.30
Identities = 26/44 (59%), Positives = 27/44 (61%), Frame = +3
Query: 243 GDRPRGP--PRFD-GERRFGGDRDGYRGGPRG--PGGD--FGDK 353
GDR RG PR D GER FGGDR G RGG G P D FGD+
Sbjct: 258 GDRDRGGFRPREDRGERNFGGDRGGDRGGQGGFRPREDRNFGDR 301
Score = 87 (30.6 bits), Expect = 2.4, P = 0.91
Identities = 21/32 (65%), Positives = 21/32 (65%), Frame = +3
Query: 243 GDRPRGP--PRFD-GERRFGGDRDGYRGGPRG 329
GDR RG PR D GER FGGDR G RGG G
Sbjct: 258 GDRDRGGFRPREDRGERNFGGDRGGDRGGQGG 289
>gi|211650|gb|AAA48718.1| (M17375) type XII collagen [Gallus gallus]
Length = 117
Frame 3 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | 117
0 50 100
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.0064, P = 0.0064
Identities = 28/55 (50%), Positives = 33/55 (60%), Frame = +3
Query: 198 RKQAKPAGRP-FGGPPGDRPRGPPRFDGERRFGGDRDGYRG----GPRGPGGDFGDKGGS 362
R + P GRP F GPPG + GPP GER G++ G RG GPRG G G +G S
Sbjct: 1 RGEPGPGGRPGFPGPPGFQ--GPP---GERGMPGEK-GERGTGSQGPRGLPGPPGPQGES 54
>gi|5816693|dbj|BAA83681.1| (AB030234) D4 dopamine receptor [Canis familiaris]
Length = 78
Frame -1 hits (HSPs): _____________
Frame -2 hits (HSPs): ____________________________________________
Frame -3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 78
0 20 40 60
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 0.0074, Sum P(2) = 0.0074
Identities = 19/43 (44%), Positives = 21/43 (48%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPP 230
PP SP G GPP P SP + +P R P SPG PP
Sbjct: 33 PPPPDGSPDGTPGPPP-PDGSPDD--NP--RPPPPDSSPGPPP 70
Score = 63 (22.2 bits), Expect = 5.3, P = 0.99
Identities = 18/47 (38%), Positives = 20/47 (42%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLP 218
PP SP G GPP P P+ S G P P G P+G P
Sbjct: 3 PPPPDGSPDGTPGPP--PPDGSPDGTSDGTPGPP---PPDGSPDGTP 44
Score = 42 (14.8 bits), Expect = 0.0074, Sum P(2) = 0.0074
Identities = 8/15 (53%), Positives = 9/15 (60%), Frame = -1
Query: 422 DRSQAFPPGPPPKEG 378
D S PGPPP +G
Sbjct: 7 DGSPDGTPGPPPPDG 21
Score = 41 (14.4 bits), Expect = 0.0094, Sum P(2) = 0.0093
Identities = 6/8 (75%), Positives = 7/8 (87%), Frame = -1
Query: 401 PGPPPKEG 378
PGPPP +G
Sbjct: 1 PGPPPPDG 8
Score = 38 (13.4 bits), Expect = 0.019, Sum P(2) = 0.019
Identities = 9/24 (37%), Positives = 11/24 (45%), Frame = -3
Query: 447 GAP*PPEPRPKPGLSARTTPKRRP 376
G P PP P P ++ TP P
Sbjct: 12 GTPGPPPPDGSPDGTSDGTPGPPP 35
>gi|545014|gb|AAC60503.1| (S68106) type IV collagen alpha 2 chain, alpha 2 (IV)
{alternatively spliced} [Ascaris suum, Peptide Partial, 99 aa]
Length = 99
Frame 3 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | | 99
0 20 40 60 80
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.0083, P = 0.0082
Identities = 28/56 (50%), Positives = 29/56 (51%), Frame = +3
Query: 204 QAKPAGRP-FG--GP---PGD-RPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKG 356
+A P G P G GP PGD P GPP G R F G G GPRG GD G KG
Sbjct: 6 EAGPPGNPGIGSIGPKGDPGDIGPAGPPGPPGPREFTGS--GSIVGPRGHSGDKGVKG 61
>gi|3023382|sp|Q98937|FXGA_CHICK FORKHEAD PROTEIN G1A (FORKHEAD-RELATED PROTEIN
FKHL2) (TRANSCRIPTION FACTOR BF-2) (BRAIN FACTOR 2) (BF2) (CBF-2)
(T-14-6) >gi|7446203|pir||S71795 transcription factor CBF-2 -
chicken >gi|1546784|gb|AAB08467.1| (U47276) chicken brain factor-2
[Gallus gallus]
Length = 440
Frame -2 hits (HSPs): __________
Annotated Domains: ___ __ ______________________________________
__________________________________________________
Database sequence: | | | | 440
0 150 300
__________________
Annotated Domains:
Entrez Domain: POLY-ARG. 39..43
Entrez Domain: POLY-GLU. 49..58
Entrez Domain: POLY-GLY. 77..88
Entrez Domain: POLY-ALA. 109..112
Entrez Domain: POLY-GLY. 113..137
Entrez dna-binding site: FORK-HEAD. 143..237
Entrez Domain: POLY-PRO. 321..330
PFAM Fork_head: Fork head domain 143..238
PRINTS FORKHEAD1: Fork head domain motif I - 2 143..156
PRINTS FORKHEAD2: Fork head domain motif II - 2 164..181
PRINTS FORKHEAD3: Fork head domain motif III - 187..204
PRODOM PD000425: BF1(4) HN3A(3) HN3G(3) 143..237
PRODOM PD076859: BF2_CHICK 239..299
PRODOM PD000540: H1(18) O76786(11) TONB(10) 301..433
PROSITE FORK_HEAD_1: Fork head domain signature 143..156
PROSITE FORK_HEAD_2: Fork head domain signature 187..193
__________________
Minus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.0090, P = 0.0090
Identities = 27/80 (33%), Positives = 35/80 (43%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLPAGLACFLESGRDN 179
PP +P P PP P PP +P L R+P G P+ L LA L + +
Sbjct: 308 PPAAPAGAPAAALPPPPPPPPPPRRRAPLLPAAELARTPFGYPHPLGPALAASLHAAKPG 367
Query: 178 FGWKVEVSPKELNSIVGEEP 119
G V SP + SI+G P
Sbjct: 368 SGAAVARSPFSIESIIGGGP 387
>gi|7492457|pir||T40618 probable cell wall protein - fission yeast
(Schizosaccharomyces pombe) >gi|4049505|emb|CAA22526.1| (AL034563)
hypothetical glycine rich protein [Schizosaccharomyces pombe]
Length = 273
Frame 3 hits (HSPs): ________________
Frame 2 hits (HSPs): _______
Frame 1 hits (HSPs): ____ ___
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.56, P = 0.43
Identities = 22/45 (48%), Positives = 23/45 (51%), Frame = +3
Query: 228 FGGPPGDRPRGPPRFDG-ERRFGGDRDGYRGGPRGPGGDFGDKGG 359
FGG PG GP F G FGG G+ GGP G GG G GG
Sbjct: 226 FGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Score = 82 (28.9 bits), Expect = 0.0093, Sum P(3) = 0.0093
Identities = 21/47 (44%), Positives = 23/47 (48%), Frame = +3
Query: 228 FGGPPGDRPRGPPRFDGERRFGGD---RDGYRGGPRGPGGDFGDKGG 359
FGG G P GP F G FGG+ G+ G GPGG G GG
Sbjct: 193 FGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGG 239
Score = 71 (25.0 bits), Expect = 0.22, Sum P(3) = 0.19
Identities = 21/49 (42%), Positives = 22/49 (44%), Frame = +3
Query: 213 PAGRPFGGPPGDRPRGPPRFDGERRFGGDRDGYRGGPRGPGGDFGDKGG 359
P G FGG G G G FGG G+ GGP G GG G GG
Sbjct: 204 PGG--FGGFGGFGGEGH-HHGGHGGFGGGPGGFEGGPGGFGGGPGGFGG 249
Score = 59 (20.8 bits), Expect = 5.8, Sum P(3) = 1.0
Identities = 14/24 (58%), Positives = 14/24 (58%), Frame = +3
Query: 288 FGGDRDGYRGGPRGPGGDFGDKGG 359
FGG G G P GPGG FG GG
Sbjct: 190 FGGFGGGSGGPPPGPGG-FGGFGG 212
Score = 48 (16.9 bits), Expect = 0.0093, Sum P(3) = 0.0093
Identities = 8/12 (66%), Positives = 9/12 (75%), Frame = +2
Query: 413 GFGRGSGGYGAP 448
GFG G GG+G P
Sbjct: 260 GFGGGPGGHGGP 271
Score = 43 (15.1 bits), Expect = 0.0093, Sum P(3) = 0.0093
Identities = 7/7 (100%), Positives = 7/7 (100%), Frame = +1
Query: 385 FGGGPGG 405
FGGGPGG
Sbjct: 240 FGGGPGG 246
Score = 43 (15.1 bits), Expect = 0.0093, Sum P(3) = 0.0093
Identities = 7/7 (100%), Positives = 7/7 (100%), Frame = +1
Query: 385 FGGGPGG 405
FGGGPGG
Sbjct: 254 FGGGPGG 260
Score = 43 (15.1 bits), Expect = 0.70, Sum P(2) = 0.50
Identities = 7/7 (100%), Positives = 7/7 (100%), Frame = +1
Query: 385 FGGGPGG 405
FGGGPGG
Sbjct: 261 FGGGPGG 267
Score = 43 (15.1 bits), Expect = 5.8, Sum P(3) = 1.0
Identities = 7/7 (100%), Positives = 7/7 (100%), Frame = +1
Query: 385 FGGGPGG 405
FGGGPGG
Sbjct: 226 FGGGPGG 232
Score = 42 (14.8 bits), Expect = 0.036, Sum P(3) = 0.035
Identities = 7/10 (70%), Positives = 8/10 (80%), Frame = +2
Query: 413 GFGRGSGGYG 442
GFG G GG+G
Sbjct: 253 GFGGGPGGFG 262
Score = 42 (14.8 bits), Expect = 0.88, Sum P(2) = 0.59
Identities = 7/10 (70%), Positives = 8/10 (80%), Frame = +2
Query: 413 GFGRGSGGYG 442
GFG G GG+G
Sbjct: 239 GFGGGPGGFG 248
Score = 41 (14.4 bits), Expect = 0.045, Sum P(3) = 0.044
Identities = 7/10 (70%), Positives = 8/10 (80%), Frame = +2
Query: 413 GFGRGSGGYG 442
GFG G GG+G
Sbjct: 246 GFGGGLGGFG 255
>gi|5816697|dbj|BAA83683.1| (AB030236) D4 dopamine receptor [Canis familiaris]
Length = 82
Frame -1 hits (HSPs): _____
Frame -2 hits (HSPs): _____________________________________________
Frame -3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 82
0 20 40 60 80
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 0.0094, Sum P(2) = 0.0093
Identities = 19/43 (44%), Positives = 21/43 (48%), Frame = -2
Query: 358 PPLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPP 230
PP SP G GPP P SP + +P R P SPG PP
Sbjct: 37 PPPPDGSPDGTPGPPP-PDGSPDD--NP--RPPPPDSSPGPPP 74
Score = 62 (21.8 bits), Expect = 0.012, Sum P(2) = 0.012
Identities = 19/46 (41%), Positives = 21/46 (45%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPP-NGLP 218
P SPP P G P S P P G P G +PG PP +G P
Sbjct: 14 PDGTPSPPPPDGSPDGTSDGTPG--PPPPDGSPDG-TPGPPPPDGSP 57
Score = 61 (21.5 bits), Expect = 8.8, P = 1.0
Identities = 19/46 (41%), Positives = 21/46 (45%), Frame = -2
Query: 334 PGPRGPPRYPSRSPPNLLSPSKR-GGPLGRSPG--GPP--NGLPAG 212
PGP P P +P SP G P G S G GPP +G P G
Sbjct: 1 PGPPPPDGSPDGTPDGTPSPPPPDGSPDGTSDGTPGPPPPDGSPDG 46
Score = 41 (14.4 bits), Expect = 0.0094, Sum P(2) = 0.0093
Identities = 6/8 (75%), Positives = 7/8 (87%), Frame = -1
Query: 401 PGPPPKEG 378
PGPPP +G
Sbjct: 1 PGPPPPDG 8
Score = 38 (13.4 bits), Expect = 0.019, Sum P(2) = 0.019
Identities = 9/24 (37%), Positives = 11/24 (45%), Frame = -3
Query: 447 GAP*PPEPRPKPGLSARTTPKRRP 376
G P PP P P ++ TP P
Sbjct: 16 GTPSPPPPDGSPDGTSDGTPGPPP 39
>gi|130999|sp|P05142|PRP2_MOUSE PROLINE-RICH PROTEIN MP-2 PRECURSOR
>gi|200547|gb|AAA40004.1| (M12099) proline-rich protein [Mus
musculus]
Length = 261
Frame -2 hits (HSPs): ___________________________________________
Frame -3 hits (HSPs): ______________________________
Annotated Domains: _________________________________ _______________
__________________________________________________
Database sequence: | | | | | | | 261
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM03894: PROLINE-RICHPROTEIN 1..134
PRODOM PD019000: PRP2(1) Q62103(1) 1..47
PRODOM PD000540: H1(18) O76786(11) TONB(10) 54..173
PRODOM PD000540: H1(18) O76786(11) TONB(10) 179..252
__________________
Minus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.011, Sum P(2) = 0.011
Identities = 19/48 (39%), Positives = 24/48 (50%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLPAG 212
P P+ PP P GP P++ PP P + PL + GPP G P G
Sbjct: 213 PRPPQGPPPPGGPQPSPTQGPPPTGGPQQTP-PLAGNTQGPPQGRPQG 259
Score = 86 (30.3 bits), Expect = 0.20, Sum P(2) = 0.18
Identities = 23/54 (42%), Positives = 26/54 (48%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKR--------GGPLGRSPGGPPNGLPAG 212
P P+ PP P GP + P + PP P R GGP R P GPP PAG
Sbjct: 102 PRPPQGPPPPGGPQQRPPQGPPPPGGPQPRPPQGPPPPGGPQLRPPQGPPP--PAG 155
Score = 86 (30.3 bits), Expect = 2.0, P = 0.86
Identities = 22/48 (45%), Positives = 23/48 (47%), Frame = -2
Query: 373 SQQELPPLSPKSPPGPRGPPRY--PSRSPPNLLSPSKRGGPLGRSPGGPP 230
SQQ PP P P+GPP P PP P GGP R P GPP
Sbjct: 48 SQQGPPPPGGPQPRPPQGPPPPGGPQPRPPQ--GPPPPGGPQPRPPQGPP 95
Score = 85 (29.9 bits), Expect = 0.26, Sum P(2) = 0.23
Identities = 19/42 (45%), Positives = 22/42 (52%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPP 230
P P+ PP P GP + P + PP P GGP R P GPP
Sbjct: 102 PRPPQGPPPPGGPQQRPPQGPP---PP---GGPQPRPPQGPP 137
Score = 83 (29.2 bits), Expect = 0.45, Sum P(2) = 0.36
Identities = 21/42 (50%), Positives = 22/42 (52%), Frame = -2
Query: 355 PLSPKSPPGPRGP-PRYPSRSPPNLLSPSKRGGPLGRSPGGPP 230
P P+ PP P GP PR P PP P GGP R P GPP
Sbjct: 74 PRPPQGPPPPGGPQPRPPQGPPP----P---GGPQPRPPQGPP 109
Score = 83 (29.2 bits), Expect = 0.45, Sum P(2) = 0.36
Identities = 21/42 (50%), Positives = 22/42 (52%), Frame = -2
Query: 355 PLSPKSPPGPRGP-PRYPSRSPPNLLSPSKRGGPLGRSPGGPP 230
P P+ PP P GP PR P PP P GGP R P GPP
Sbjct: 88 PRPPQGPPPPGGPQPRPPQGPPP----P---GGPQQRPPQGPP 123
Score = 83 (29.2 bits), Expect = 0.45, Sum P(2) = 0.36
Identities = 26/60 (43%), Positives = 29/60 (48%), Frame = -2
Query: 391 PQKKACSQQELPPLSPKSPPGPRGPPRY--PSRSPPNLLSPSKRGGPLGRSPGGPPNGLP 218
PQ + Q PP P+ P P+GPP P PP P GGP R P GPP P
Sbjct: 100 PQPRP-PQGPPPPGGPQQRP-PQGPPPPGGPQPRPPQ--GPPPPGGPQLRPPQGPPP--P 153
Query: 217 AG 212
AG
Sbjct: 154 AG 155
Score = 81 (28.5 bits), Expect = 0.40, Sum P(2) = 0.33
Identities = 21/48 (43%), Positives = 24/48 (50%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLPAG 212
P P+ PP P GP P + PP P+ GP R P GPP PAG
Sbjct: 130 PRPPQGPPPPGGPQLRPPQGPP---PPA---GPQPRPPQGPPP--PAG 169
Score = 81 (28.5 bits), Expect = 7.7, P = 1.0
Identities = 23/46 (50%), Positives = 25/46 (54%), Frame = -2
Query: 367 QELPPL--SPKSPPGPRGP-PRYPSRSPPNLLSPSKRGGPLGRSPGGPP 230
Q PP+ S + PP P GP PR P PP P GGP R P GPP
Sbjct: 40 QPRPPVNGSQQGPPPPGGPQPRPPQGPPP----P---GGPQPRPPQGPP 81
Score = 79 (27.8 bits), Expect = 0.68, Sum P(2) = 0.49
Identities = 18/49 (36%), Positives = 21/49 (42%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNL-------LSPSKRGGPLGRSPGGPP 230
P P+ PP P GP P + PP P GGP + P GPP
Sbjct: 158 PRPPQGPPPPAGPQPRPPQGPPTTGPQPRPTQGPPPTGGPQQQPPQGPP 206
Score = 79 (27.8 bits), Expect = 0.68, Sum P(2) = 0.49
Identities = 20/54 (37%), Positives = 22/54 (40%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKR--------GGPLGRSPGGPPNGLP 218
P P+ PP P GP P + PP P R GP R P GPP P
Sbjct: 130 PRPPQGPPPPGGPQLRPPQGPPPPAGPQPRPPQGPPPPAGPQPRPPQGPPTTGP 183
Score = 78 (27.5 bits), Expect = 0.91, Sum P(2) = 0.60
Identities = 22/50 (44%), Positives = 24/50 (48%), Frame = -2
Query: 367 QELPPLSPKSP-PGPR---GPPRY--PSRSPPNLLSPSKRGGPLGRSPGGPP 230
Q PP P + P PR GPP P + PP P GGP R P GPP
Sbjct: 171 QPRPPQGPPTTGPQPRPTQGPPPTGGPQQQPPQ--GPPPPGGPQPRPPQGPP 220
Score = 76 (26.8 bits), Expect = 1.5, Sum P(2) = 0.79
Identities = 20/43 (46%), Positives = 22/43 (51%), Frame = -2
Query: 346 PKSPPGPRGP-PRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLP 218
P+ PP P GP PR P PP P+ GP R P GPP P
Sbjct: 147 PQGPPPPAGPQPRPPQGPPP----PA---GPQPRPPQGPPTTGP 183
Score = 71 (25.0 bits), Expect = 3.8, Sum P(2) = 0.98
Identities = 21/49 (42%), Positives = 27/49 (55%), Frame = -2
Query: 367 QELPPLSPKSPPGPR-----GPPRY--PSRSPPNLLSPSKRGGPLGRSPGGP 233
Q PP P P GP+ GPP P ++PP L+ + +G P GR P GP
Sbjct: 212 QPRPPQGPPPPGGPQPSPTQGPPPTGGPQQTPP--LAGNTQGPPQGR-PQGP 260
Score = 48 (16.9 bits), Expect = 0.011, Sum P(2) = 0.011
Identities = 11/25 (44%), Positives = 14/25 (56%), Frame = -3
Query: 447 GAP*PPEPRPKPGLSARTT-PKRRP 376
G P P P+P+P TT P+ RP
Sbjct: 163 GPPPPAGPQPRPPQGPPTTGPQPRP 187
Score = 46 (16.2 bits), Expect = 0.018, Sum P(2) = 0.018
Identities = 11/26 (42%), Positives = 14/26 (53%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRRP 376
G P P P+PRP G P++RP
Sbjct: 93 GPPPPGGPQPRPPQGPPPPGGPQQRP 118
Score = 45 (15.8 bits), Expect = 0.022, Sum P(2) = 0.022
Identities = 11/26 (42%), Positives = 13/26 (50%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRRP 376
G P P P+PRP G P+ RP
Sbjct: 149 GPPPPAGPQPRPPQGPPPPAGPQPRP 174
Score = 43 (15.1 bits), Expect = 0.036, Sum P(2) = 0.035
Identities = 11/26 (42%), Positives = 13/26 (50%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRRP 376
G P P P+PRP G P+ RP
Sbjct: 51 GPPPPGGPQPRPPQGPPPPGGPQPRP 76
Score = 43 (15.1 bits), Expect = 0.036, Sum P(2) = 0.035
Identities = 11/26 (42%), Positives = 13/26 (50%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRRP 376
G P P P+PRP G P+ RP
Sbjct: 65 GPPPPGGPQPRPPQGPPPPGGPQPRP 90
Score = 43 (15.1 bits), Expect = 0.036, Sum P(2) = 0.035
Identities = 11/26 (42%), Positives = 13/26 (50%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRRP 376
G P P P+PRP G P+ RP
Sbjct: 79 GPPPPGGPQPRPPQGPPPPGGPQPRP 104
Score = 43 (15.1 bits), Expect = 0.036, Sum P(2) = 0.035
Identities = 11/26 (42%), Positives = 13/26 (50%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRRP 376
G P P P+PRP G P+ RP
Sbjct: 121 GPPPPGGPQPRPPQGPPPPGGPQLRP 146
Score = 39 (13.7 bits), Expect = 0.090, Sum P(2) = 0.086
Identities = 7/19 (36%), Positives = 11/19 (57%), Frame = -3
Query: 432 PEPRPKPGLSARTTPKRRP 376
P+PRP G P+++P
Sbjct: 183 PQPRPTQGPPPTGGPQQQP 201
Score = 38 (13.4 bits), Expect = 0.11, Sum P(2) = 0.11
Identities = 8/22 (36%), Positives = 11/22 (50%), Frame = -3
Query: 441 P*PPEPRPKPGLSARTTPKRRP 376
P PP+ P PG + P+ P
Sbjct: 102 PRPPQGPPPPGGPQQRPPQGPP 123
>gi|7295120|gb|AAF50445.1| (AE003556) CG7185 gene product [Drosophila
melanogaster]
Length = 702
Frame -2 hits (HSPs): _____ ______
__________________________________________________
Database sequence: | | | | | | 702
0 150 300 450 600
Minus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.013, P = 0.013
Identities = 27/70 (38%), Positives = 37/70 (52%), Frame = -2
Query: 394 HPQKKACSQQE-LPPLSPKSPPGPRGPPRYPSRSPPNLLS-PSKRGGPLGRSPGGPPNGL 221
+P K+A +Q E L P PP GPPR P+ PP++ P G P G GGPP
Sbjct: 170 YPSKQALTQFESLQKTRPVPPPQQNGPPRGPA--PPSMGGGPMPTGHPGGPQGGGPPGHP 227
Query: 220 PAGLACFLESGR 185
P G+ ++ G+
Sbjct: 228 PRGMNSIMQPGQ 239
Score = 86 (30.3 bits), Expect = 8.1, P = 1.0
Identities = 24/60 (40%), Positives = 28/60 (46%), Frame = -2
Query: 394 HPQKKACSQQELPPLSPKSP---PG--PRGPPRYPSRSPPNLLSPSKRGGPLG---RSPG 239
HPQ Q+ PP P + PG P GP P PP P +GGP+G R P
Sbjct: 266 HPQGGLMGNQQPPPRYPSAQGQWPGQRPGGPRPGPPNGPPQ--RPMFQGGPMGMPVRGPA 323
Query: 238 GP 233
GP
Sbjct: 324 GP 325
>gi|91209|pir||A24264 proline-rich protein MP2 - mouse (fragment)
Length = 240
Frame -2 hits (HSPs): _______________________________________________
Frame -3 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | 240
0 50 100 150 200
Minus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.015, Sum P(2) = 0.014
Identities = 19/48 (39%), Positives = 24/48 (50%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLPAG 212
P P+ PP P GP P++ PP P + PL + GPP G P G
Sbjct: 192 PRPPQGPPPPGGPQPSPTQGPPPTGGPQQTP-PLAGNTQGPPPGRPQG 238
Score = 86 (30.3 bits), Expect = 0.14, Sum P(2) = 0.13
Identities = 23/54 (42%), Positives = 26/54 (48%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKR--------GGPLGRSPGGPPNGLPAG 212
P P+ PP P GP + P + PP P R GGP R P GPP PAG
Sbjct: 81 PRPPQGPPPPGGPQQRPPQGPPPPGGPQPRPPQGPPPPGGPQLRPPQGPPP--PAG 134
Score = 86 (30.3 bits), Expect = 1.7, P = 0.82
Identities = 22/48 (45%), Positives = 23/48 (47%), Frame = -2
Query: 373 SQQELPPLSPKSPPGPRGPPRY--PSRSPPNLLSPSKRGGPLGRSPGGPP 230
SQQ PP P P+GPP P PP P GGP R P GPP
Sbjct: 27 SQQGPPPPGGPQPRPPQGPPPPGGPQPRPPQ--GPPPPGGPQPRPPQGPP 74
Score = 85 (29.9 bits), Expect = 0.19, Sum P(2) = 0.17
Identities = 19/42 (45%), Positives = 22/42 (52%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPP 230
P P+ PP P GP + P + PP P GGP R P GPP
Sbjct: 81 PRPPQGPPPPGGPQQRPPQGPP---PP---GGPQPRPPQGPP 116
Score = 83 (29.2 bits), Expect = 0.17, Sum P(2) = 0.16
Identities = 19/49 (38%), Positives = 21/49 (42%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNL-------LSPSKRGGPLGRSPGGPP 230
P P+ PP P GP P + PP P GGP R P GPP
Sbjct: 137 PRPPQGPPPPAGPQPRPPQGPPTTGPQPRPTQGPPPTGGPQQRPPQGPP 185
Score = 83 (29.2 bits), Expect = 0.34, Sum P(2) = 0.29
Identities = 21/42 (50%), Positives = 22/42 (52%), Frame = -2
Query: 355 PLSPKSPPGPRGP-PRYPSRSPPNLLSPSKRGGPLGRSPGGPP 230
P P+ PP P GP PR P PP P GGP R P GPP
Sbjct: 53 PRPPQGPPPPGGPQPRPPQGPPP----P---GGPQPRPPQGPP 88
Score = 83 (29.2 bits), Expect = 0.34, Sum P(2) = 0.29
Identities = 21/42 (50%), Positives = 22/42 (52%), Frame = -2
Query: 355 PLSPKSPPGPRGP-PRYPSRSPPNLLSPSKRGGPLGRSPGGPP 230
P P+ PP P GP PR P PP P GGP R P GPP
Sbjct: 67 PRPPQGPPPPGGPQPRPPQGPPP----P---GGPQQRPPQGPP 102
Score = 83 (29.2 bits), Expect = 0.34, Sum P(2) = 0.29
Identities = 26/60 (43%), Positives = 29/60 (48%), Frame = -2
Query: 391 PQKKACSQQELPPLSPKSPPGPRGPPRY--PSRSPPNLLSPSKRGGPLGRSPGGPPNGLP 218
PQ + Q PP P+ P P+GPP P PP P GGP R P GPP P
Sbjct: 79 PQPRP-PQGPPPPGGPQQRP-PQGPPPPGGPQPRPPQ--GPPPPGGPQLRPPQGPPP--P 132
Query: 217 AG 212
AG
Sbjct: 133 AG 134
Score = 81 (28.5 bits), Expect = 0.30, Sum P(2) = 0.26
Identities = 21/48 (43%), Positives = 24/48 (50%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLPAG 212
P P+ PP P GP P + PP P+ GP R P GPP PAG
Sbjct: 109 PRPPQGPPPPGGPQLRPPQGPP---PPA---GPQPRPPQGPPP--PAG 148
Score = 81 (28.5 bits), Expect = 6.6, P = 1.0
Identities = 23/46 (50%), Positives = 25/46 (54%), Frame = -2
Query: 367 QELPPL--SPKSPPGPRGP-PRYPSRSPPNLLSPSKRGGPLGRSPGGPP 230
Q PP+ S + PP P GP PR P PP P GGP R P GPP
Sbjct: 19 QPRPPVNGSQQGPPPPGGPQPRPPQGPPP----P---GGPQPRPPQGPP 60
Score = 79 (27.8 bits), Expect = 0.51, Sum P(2) = 0.40
Identities = 20/54 (37%), Positives = 22/54 (40%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKR--------GGPLGRSPGGPPNGLP 218
P P+ PP P GP P + PP P R GP R P GPP P
Sbjct: 109 PRPPQGPPPPGGPQLRPPQGPPPPAGPQPRPPQGPPPPAGPQPRPPQGPPTTGP 162
Score = 77 (27.1 bits), Expect = 0.91, Sum P(2) = 0.60
Identities = 22/50 (44%), Positives = 24/50 (48%), Frame = -2
Query: 367 QELPPLSPKSP-PGPR---GPPRY--PSRSPPNLLSPSKRGGPLGRSPGGPP 230
Q PP P + P PR GPP P + PP P GGP R P GPP
Sbjct: 150 QPRPPQGPPTTGPQPRPTQGPPPTGGPQQRPPQ--GPPPPGGPQPRPPQGPP 199
Score = 76 (26.8 bits), Expect = 1.2, Sum P(2) = 0.69
Identities = 20/43 (46%), Positives = 22/43 (51%), Frame = -2
Query: 346 PKSPPGPRGP-PRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLP 218
P+ PP P GP PR P PP P+ GP R P GPP P
Sbjct: 126 PQGPPPPAGPQPRPPQGPPP----PA---GPQPRPPQGPPTTGP 162
Score = 70 (24.6 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 21/49 (42%), Positives = 27/49 (55%), Frame = -2
Query: 367 QELPPLSPKSPPGPR-----GPPRY--PSRSPPNLLSPSKRGGPLGRSPGGP 233
Q PP P P GP+ GPP P ++PP L+ + +G P GR P GP
Sbjct: 191 QPRPPQGPPPPGGPQPSPTQGPPPTGGPQQTPP--LAGNTQGPPPGR-PQGP 239
Score = 48 (16.9 bits), Expect = 0.015, Sum P(2) = 0.014
Identities = 11/25 (44%), Positives = 14/25 (56%), Frame = -3
Query: 447 GAP*PPEPRPKPGLSARTT-PKRRP 376
G P P P+P+P TT P+ RP
Sbjct: 142 GPPPPAGPQPRPPQGPPTTGPQPRP 166
Score = 46 (16.2 bits), Expect = 0.023, Sum P(2) = 0.023
Identities = 11/26 (42%), Positives = 14/26 (53%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRRP 376
G P P P+PRP G P++RP
Sbjct: 72 GPPPPGGPQPRPPQGPPPPGGPQQRP 97
Score = 45 (15.8 bits), Expect = 0.029, Sum P(2) = 0.029
Identities = 11/26 (42%), Positives = 13/26 (50%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRRP 376
G P P P+PRP G P+ RP
Sbjct: 128 GPPPPAGPQPRPPQGPPPPAGPQPRP 153
Score = 43 (15.1 bits), Expect = 0.047, Sum P(2) = 0.046
Identities = 8/19 (42%), Positives = 11/19 (57%), Frame = -3
Query: 432 PEPRPKPGLSARTTPKRRP 376
P+PRP G P++RP
Sbjct: 162 PQPRPTQGPPPTGGPQQRP 180
Score = 43 (15.1 bits), Expect = 0.047, Sum P(2) = 0.046
Identities = 11/26 (42%), Positives = 13/26 (50%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRRP 376
G P P P+PRP G P+ RP
Sbjct: 30 GPPPPGGPQPRPPQGPPPPGGPQPRP 55
Score = 43 (15.1 bits), Expect = 0.047, Sum P(2) = 0.046
Identities = 11/26 (42%), Positives = 13/26 (50%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRRP 376
G P P P+PRP G P+ RP
Sbjct: 44 GPPPPGGPQPRPPQGPPPPGGPQPRP 69
Score = 43 (15.1 bits), Expect = 0.047, Sum P(2) = 0.046
Identities = 11/26 (42%), Positives = 13/26 (50%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRRP 376
G P P P+PRP G P+ RP
Sbjct: 58 GPPPPGGPQPRPPQGPPPPGGPQPRP 83
Score = 43 (15.1 bits), Expect = 0.047, Sum P(2) = 0.046
Identities = 11/26 (42%), Positives = 13/26 (50%), Frame = -3
Query: 447 GAP*P--PEPRPKPGLSARTTPKRRP 376
G P P P+PRP G P+ RP
Sbjct: 100 GPPPPGGPQPRPPQGPPPPGGPQLRP 125
Score = 38 (13.4 bits), Expect = 0.15, Sum P(2) = 0.14
Identities = 8/22 (36%), Positives = 11/22 (50%), Frame = -3
Query: 441 P*PPEPRPKPGLSARTTPKRRP 376
P PP+ P PG + P+ P
Sbjct: 81 PRPPQGPPPPGGPQQRPPQGPP 102
>gi|322747|pir||PQ0452 extensin-like protein - Persian tobacco (strain S2S3)
(fragment)
Length = 122
Frame -2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | 122
0 50 100
Minus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.016, P = 0.016
Identities = 27/68 (39%), Positives = 32/68 (47%), Frame = -2
Query: 418 EARPFRQDHPQKKACSQQELPPLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPG 239
++ P R P++ +Q PP KSPP P PP PS PP SPS P SP
Sbjct: 30 KSSPSRSPPPKR----EQPSPPPPVKSPPPPSPPPPSPSPPPP---SPS----PPPPSPS 78
Query: 238 GPPNGLPA 215
PP PA
Sbjct: 79 PPPPSPPA 86
>gi|7497784|pir||T29293 hypothetical protein C50F7.5 - Caenorhabditis elegans
>gi|1118091|gb|AAA83301.1| (U41557) histidine-rich [Caenorhabditis
elegans]
Length = 309
Frame -2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | | 309
0 50 100 150 200 250 300
Minus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.020, P = 0.020
Identities = 22/46 (47%), Positives = 23/46 (50%), Frame = -2
Query: 349 SPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPGGPPNGLPAG 212
SP PPGP GPP P+R PP P R P P GPP P G
Sbjct: 239 SPSDPPGPPGPPGPPTRRPPGPPGPPTRRPP---GPPGPPTRRPPG 281
>gi|5816695|dbj|BAA83682.1| (AB030235) D4 dopamine receptor [Canis familiaris]
Length = 82
Frame -1 hits (HSPs): _____
Frame -2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | | 82
0 20 40 60 80
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 0.020, Sum P(2) = 0.020
Identities = 20/48 (41%), Positives = 21/48 (43%), Frame = -2
Query: 355 PLSPKSPPGPRGPPRYPSRSPPNLLSPSKRGGPLGRSPG--GPP--NGLP 218
P SPP P G P S P P G P G S G GPP +G P
Sbjct: 10 PDGTPSPPPPDGSPDGTSDGTPG--PPPPDGSPDGTSDGTPGPPPPDGSP 57
Score = 41 (14.4 bits), Expect = 0.020, Sum P(2) = 0.020
Identities = 6/8 (75%), Positives = 7/8 (87%), Frame = -1
Query: 401 PGPPPKEG 378
PGPPP +G
Sbjct: 1 PGPPPPDG 8
WARNING: HSPs involving 651 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.338 0.152 0.536
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.348 0.157 0.572
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.335 0.147 0.514
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.339 0.144 0.500
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.328 0.146 0.477
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.347 0.153 0.534
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 202 198 10. 76 3 12 22 0.093 35
31 0.10 38
+2 0 202 197 10. 76 3 12 22 0.092 35
31 0.10 38
+1 0 202 198 10. 76 3 12 22 0.093 35
31 0.10 38
-1 0 202 197 10. 76 3 12 22 0.092 35
31 0.10 38
-2 0 202 197 10. 76 3 12 22 0.092 35
31 0.10 38
-3 0 202 197 10. 76 3 12 22 0.092 35
31 0.10 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 701
No. of states in DFA: 595 (59 KB)
Total size of DFA: 233 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 255.85u 1.10s 256.95t Elapsed: 00:00:43
Total cpu time: 255.95u 1.12s 257.07t Elapsed: 00:00:44
Start: Mon Oct 1 19:51:08 2001 End: Mon Oct 1 19:51:52 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000