Reference SNP(refSNP) Cluster Report: rs31305107

Reference SNP(refSNP) Cluster Report: rs31305107

refSNP ID: rs31305107
Organism:	mouse (Mus musculus)
Molecule Type:	Genomic
Created/Updated in build:	125/128
Map to Genome Build:	37.1

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/C
Strain:	not submitted
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss46510313 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs31305107 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss46510313	ABI\|mCV22659282		fwd/T	A/C	caaacaaacaacaaggcatggtgatgtatg	ctggaatgcctgggaggtagaaacaggtgg	07/20/05	01/21/06	125	Genomic			unknown
ss57529280	ENSEMBL\|NT_039706.5_18549584		fwd/T	A/C	caaacaaacaacaaggcatggtgatgtatg	ctggaatgcctgggaggtagaaacaggtgg	06/11/06	06/12/06	127	Genomic			unknown

Fasta sequence (Legend)

 ACTGTGAAGT TGAATTAAAG AGCAACAATA ACGGGCTGGT GGGATGGCTT AGTAGGCACA
 CACACACACA CACAAACACA CACATACACT ATGCTGTACA CCCCCACCCT CACATAAAAA
 ATGTAATAAA ATAAATAAAT TTAAAAATCA ACAATAAAGC CAGGCATGGT GGTGCTTGTT
 TTTAATCCCA GCATTCAGAA GGCAGAAGCA AGACGGATCT CTGTGAGTTC AGGATTTGAG
 TCTCTCTGTC TCAGCAAACA AACAAACAAA CAAACAAACA ACAAGGCATG GTGATGTATG
 M
 CTGGAATGCC TGGGAGGTAG AAACAGGTGG ATTTGAGTAG TGTCTATAAC ACTTGGGAGG
 TAGAAGCAGA TGGATCTCTG TGAGGTCGAG ACCAGCCTGG TCTACATAGT GAGTTTTAGG
 ACAACCGGGG TTATGTAAAG AGAAGCCATC TCGAAAACAT ACAAAACAAA ACAACAAAGT
 AAAGCATGCT GCTACAAGTC TATAATCCTA GCACTTGGGA AATAGAGGCC ATGCAAATTT
 GAGGCCAGCT TAATTTACTT AGGGACTTCC AGGCTTACCA GGAGACCTTA TCTTAAAAAC

GeneView

GeneView via analysis of contig annotation: Avpr2 arginine vasopressin receptor 2

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

Celera

NW_001035173->NM_019404

function

C57BL/6J

NT_039706->NM_019404

function

129/SvEvTac

NT_039745->NM_019404

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


Celera	NW_001035173->NM_019404->NP_062277	737010	forward	5' near gene

C57BL/6J	NT_039706->NM_019404->NP_062277	18720115	forward	5' near gene

129/SvEvTac	NT_039745->NM_019404->NP_062277	508952	forward	5' near gene

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs31305107 maps exactly once on NCBI mouse chromosome X

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
X	NW_001035173.1	737010	65143097	plus	C	alt_assembly_1	Celera	Celera	view	300
X	NT_039745.3	508952	71135133	plus	C	alt_strain_1	129/SvEvTac	129/SvEvTac	view	300
X	NT_039706.7	18720115	71136008	plus	C	ref_strain	C57BL/6J	C57BL/6J	view	300

NCBI Resource Links

Submitter-Referenced
GenBank
NT_039706.5

dbSNP Blast Analysis
GenBank HTGS Finished:
AC091472.2 AF133093.2 AL672002.14

Population Diversity

	Sample Ascertainment				Genotype Detail
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	C/C
ss46510313	CRAMUS_MOUSE		6	IG	1	2

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	-1.000+/-0	3	3	0	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .