Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss9835	CGAP-GAI|50811		fwd/T	A/T	atgcacaagatggaagagcactgttaaaat	aaaaaatggacctaaagtggcttggctgac	08/23/99	04/07/04	52	cDNA			99 %
ss1532877	LEE|591127		rev/B	A/T	gtcagccaagccactttaggtccatttttt	attttaacagtgctcttccatcttgtgcat	09/13/00	10/10/03	86	cDNA			unknown
ss4421847	LEE|e591127		rev/B	A/T	gtcagccaagccactttaggtccatttttt	attttaacagtgctcttccatcttgtgcat	04/26/02	10/10/03	106	cDNA			unknown
ss16231444	CGAP-GAI|1470989		rev/B	A/T	gtcagccaagccactttaggtccatttttt	attttaacagtgctcttccatcttgtgcat	11/18/03	11/22/03	120	cDNA			unknown
ss16231447	CGAP-GAI|1470992		rev/B	A/T	gtcagccaagccactttaggtccatttttt	attttaacagtgctcttccatcttgtgcat	11/18/03	11/22/03	120	cDNA			unknown
ss20062939	CSHL-HAPMAP|CSHL-HuFF-200402.chr19.NT_077812.2_595675		fwd/T	A/T	atgcacaagatggaagagcactgttaaaat	aaaaaatggacctaaagtggcttggctgac	02/21/04	05/16/04	120	Genomic			unknown
ss69223559	PERLEGEN|PGP09649605		fwd/	A/T	atgcacaagatggaagagcactgttaaaat	aaaaaatggacctaaagtggcttggctgac	01/30/07	08/14/07	127	Genomic			unknown
ss90896740	BCMHGSC_JDW|JWB-1141631		fwd/	A/T	atgcacaagatggaagagcactgttaaaat	aaaaaatggacctaaagtggcttggctgac	02/26/08	03/01/08	129	Genomic			unknown

Fasta sequence   (Legend)

 TCTGTCACTG GCCTCGTCTT CCAACTCAGG GTCCAGCCCT GGGCAAGGCG TCCACCCACT
 GCGGCTGCAG TTCCTCACTC GACCTTGACC GCCTCCCACA GCAGCCGCCT GCTCCCACCC
 CCACCATCGC CTCGGCCACT CCCGCGCCAG AGAAGACACT TCAGACTCCG TAGCTGCTCT
 TCTGCAATTC GGTGTTTTAT TCTTTCCAAA TCTCAGGCTT ATGCACAAGA TGGAAGAGCA
 CTGTTAAAAT
 W
 AAAAAATGGA CCTAAAGTGG CTTGGCTGAC GTGGCTAGCG GGCCACTGAG CCGCGGGTCC
 CGGGTCCCAC CCTGCTGTGG GGGGAGTCCC TGGGCCCTGG GGCCTCTTGG CACTGTGTGA
 CCTGTGTGCA CCCCAGGTGA CCAGGCGCCG GGACCCCTGC AGGGCAGAGC AACAGGGCAG
 GGGTTGGCCC TGCGGGGGAG TGTCTCCAGC TGCCGCGCAC CCGCAACAGC CCGTTGTCCC
 CTCCCGGGCC

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_077812->NM_006351 function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/T	T/T	HWP	A	T
ss20062939	CEPH		184	AF					0.310	0.690
	HapMap-CEU	European	118	IG	0.085	0.441	0.475	1.000	0.305	0.695
	HapMap-HCB	Asian	88	IG	0.227	0.568	0.205	0.371	0.511	0.489
	HapMap-JPT	Asian	88	IG	0.182	0.545	0.273	0.527	0.455	0.545
	HapMap-YRI	Sub-Saharan African	120	IG		0.250	0.750	0.273	0.125	0.875
ss69223559	HapMap-CEU	European	120	GF	0.133	0.333	0.533		0.300	0.700
	HapMap-HCB	Asian	90	GF	0.111	0.378	0.511		0.300	0.700
	HapMap-JPT	Asian	90	GF	0.067	0.222	0.711		0.178	0.822
	HapMap-YRI	Sub-Saharan African	120	GF		0.233	0.767		0.117	0.883
ss9835	POOLED_CEPH		188	AF					0.311	0.689

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP, NCBI	UNKNOWN	UNKNOWN	UNKNOWN