BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract

processing output:
cycle 1
cycle 2
cycle 3
cycle 4
Repeat sequence:
   SW  perc perc perc  query                position in query    matching repeat        position in  repeat
score  div. del. ins.  sequence             begin  end (left)    repeat   class/family  begin  end (left)  ID

  237  28.1  0.0  0.0  'D15H07_O19_16.ab1'    435  516   (94) +  (ATG)n   Simple_repeat     3   84    (0)      

Alignments:
237  28.05  0.00  0.00  'D15H07_O19_16.ab1'  435  516  (94)  C  (CAT)n#Simple_repeat  (96)  84  3  5

  'D15H07_O19_16.    435 ATGATGAAGATGATGCCAGTGGAGAGGAGGACCACCAAGAGGACGAGGAT 484    
                                v       viii  iv  v  v  iv iv v  v  i  v   
C (CAT)n#Simple_r     84 ATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAT 35     

  'D15H07_O19_16.    485 GATGAGGAGGAAGAGGACGATGAAGATGATGA 516    
                              v  v  v  v  i     v        
C (CAT)n#Simple_r     34 GATGATGATGATGATGATGATGATGATGATGA 3      

Transitions / transversions = 0.53 (8 / 15)
Gap_init rate = 0.00 (0 / 82), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>'D15H07_O19_16.ab1'
AACTTAAACGATGAAGACTGCAAAGGGCAAGGGAGCAGCGAGGCCCTCAA
AAGAATCACTGAAGCCTGTTGATGACCGAAAGGTTGGAAAGCGGAAGGCT
TCTGGTAAGCCTGAGAAAAGCAGAGCACCAAAGAAGGAGAAGAAGGCCAA
GAAAGACCCCAACAAGCCTAAAAGACCACCGAGTGCTTTCTTCGTGTTCC
TTGAGGAGTTCAGGAAGACCTTTAAGGCTGAGAATCCTCTCGTGAAGGCT
GTATCAGTTGTTGGAAAAGCTGGAGGAGAGAAATGGAAATCCCTGTCCAG
TGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGCTGAGT
ATGAAAAACTTATCAAAGCTTATGAGAAAAAGCAGGCAAGCTCTGCAGAT
GATGATGAATCAGACAAGTCCAAATCTGAAGTGANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCTGAGATTGATGTCCAAAACCTTGGTTATGATAT
TTTGTTTATGAGGGAGGCTATTATATATTCTGACTGNGCATACTAGGCTA
CTTTTTATGG

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       610 bp
GC level:         44.99 %
bases masked:        82 bp ( 13.44 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       1           82 bp    13.44 %
Low complexity:       0            0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  'D15H07_O19_16.ab1'
        (610 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 11 Sequences     : less than 11 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 4893 631 |=========================================================
   6310 4262 557 |==================================================
   3980 3705 528 |================================================
   2510 3177 440 |========================================
   1580 2737 417 |=====================================
   1000 2320 315 |============================
    631 2005 226 |====================
    398 1779 182 |================
    251 1597 126 |===========
    158 1471 123 |===========
    100 1348  94 |========
   63.1 1254  89 |========
   39.8 1165 108 |=========
   25.1 1057  66 |======
   15.8  991  68 |======
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 923  <<<<<<<<<<<<<<<<<
   10.0  923  53 |====
   6.31  870  49 |====
   3.98  821  54 |====
   2.51  767  54 |====
   1.58  713  50 |====
   1.00  663  52 |====
   0.63  611  54 |====
   0.40  557  34 |===
   0.25  523  30 |==
   0.16  493  43 |===
   0.10  450  34 |===
  0.063  416  34 |===
  0.040  382  20 |=
  0.025  362  19 |=
  0.016  343  35 |===
  0.010  308  23 |==
 0.0063  285  34 |===
 0.0040  251  21 |=
 0.0025  230   6 |:
 0.0016  224  13 |=


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|11346370|pir||T51159HMG protein [imported] - Arabi... +2   496  2.1e-46   1
gi|7446213|pir||T02252high mobility group protein HMG... +2   397  6.4e-36   1
gi|7446212|pir||T07377high mobility group protein - p... +2   387  7.3e-35   1
gi|729736|sp|P40619|HMGL_PHANIHMG1/2-LIKE PROTEIN >gi... +2   372  2.8e-33   1
gi|1052956|gb|AAC50019.1|(U39747) high mobility group... +2   368  7.5e-33   1
gi|123379|sp|P26585|HMGL_SOYBNHMG1/2-LIKE PROTEIN (SB... +2   365  1.6e-32   1
gi|11346368|pir||T51597high mobility group protein HM... +2   355  1.8e-31   1
gi|541968|pir||S40122high mobility group protein HMG-... +2   354  2.3e-31   1
gi|7446228|pir||T03375high mobility group protein HMG... +2   353  2.9e-31   1
gi|11346369|pir||T51598high mobility group protein HM... +2   349  7.8e-31   1
gi|8886929|gb|AAF80615.1|AC069251_8(AC069251) F2D10.1... +2   355  9.7e-31   1
gi|3885888|gb|AAC78104.1|(AF093632) high mobility gro... +2   346  1.6e-30   1
gi|7446231|pir||T09581probable high mobility group pr... +2   346  1.6e-30   1
gi|123378|sp|P27347|MNBB_MAIZEDNA-BINDING PROTEIN MNB... +2   339  8.9e-30   1
gi|7446229|pir||T03640high mobility group protein MNB... +2   339  8.9e-30   1
gi|729737|sp|P40620|HMGL_VICFAHMG1/2-LIKE PROTEIN >gi... +2   326  2.1e-28   1
gi|729738|sp|P40621|HMGL_WHEATHMG1/2-LIKE PROTEIN >gi... +2   326  2.1e-28   1
gi|950053|emb|CAA90679.1|(Z50799) HMG1/2-like protein... +2   325  2.7e-28   1
gi|11346367|pir||T51596high mobility group protein HM... +2   321  7.2e-28   1
gi|4914377|gb|AAD32913.1|AC007584_11(AC007584) putati... +2   318  1.5e-27   1
gi|7446227|pir||T03374high mobility group protein HMG... +2   255  7.1e-21   1
gi|7446226|pir||T03372high mobility group protein HMG... +2   250  2.4e-20   1
gi|4468042|emb|CAB37859.1|(Z21703) HMG_box [Vicia faba]  +2   248  3.9e-20   1
gi|7446230|pir||T04662high mobility group protein HMG... +2   238  4.5e-19   1
gi|729728|sp|P40618|HMGA_CHICKHIGH MOBILITY GROUP PRO... +2   230  3.2e-18   1
gi|4140289|emb|CAA76978.1|(Y17968) high mobility grou... +2   228  5.1e-18   1
gi|5815432|gb|AAD52670.1|AF178849_1(AF178849) high mo... +2   228  5.1e-18   1
gi|9759080|dbj|BAB09558.1|(AB018110) gene_id:K19M13.4... +2   227  6.6e-18   1
gi|478622|pir||S22359nonhistone chromosomal protein H... +2   226  8.4e-18   1
gi|547652|sp|P36194|HMG1_CHICKHIGH MOBILITY GROUP PRO... +2   226  8.4e-18   1
gi|5764678|gb|AAC27650.2|(AF078817) high mobility gro... +2   225  1.1e-17   1
gi|11321591ref|NP_002120.1| high-mobility group (nonh... +2   225  1.1e-17   1
gi|3342573|gb|AAC27651.1|(AF078818) high mobility gro... +2   225  1.1e-17   1
gi|104693|pir||JC1129nonhistone chromosomal protein H... +2   225  1.1e-17   1
gi|609551|gb|AAA58771.1|(L32859) HMG-1 [Oncorhynchus ... +2   223  1.7e-17   1
gi|1085210|pir||S48708high-mobility-group-1 protein -... +2   223  1.7e-17   1
gi|85591|pir||A24019nonhistone chromosomal protein HM... +2   223  1.7e-17   1
gi|6680231ref|NP_032279.1| high mobility group box 3;... +2   223  1.7e-17   1
gi|123367|sp|P10103|HMG1_BOVINHIGH MOBILITY GROUP PRO... +2   223  1.7e-17   1
gi|4504425ref|NP_002119.1| high-mobility group (nonhi... +2   223  1.7e-17   1
gi|6754208ref|NP_034569.1| high mobility group protei... +2   223  1.7e-17   1
gi|620098|emb|CAA56631.1|(X80457) high mobility group... +2   223  1.7e-17   1
gi|3342575|gb|AAC27652.1|(AF078819) high mobility gro... +2   223  1.7e-17   1
gi|123368|sp|P07156|HMG1_CRIGRHIGH MOBILITY GROUP PRO... +2   223  1.7e-17   1
gi|90208|pir||A27853nonhistone chromosomal protein HM... +2   223  1.7e-17   1
gi|422864|pir||S30221nonhistone chromosomal protein H... +2   223  1.7e-17   1
gi|123371|sp|P12682|HMG1_PIGHIGH MOBILITY GROUP PROTE... +2   222  2.2e-17   1
gi|123375|sp|P17741|HMG2_PIGHIGH MOBILITY GROUP PROTE... +2   221  2.8e-17   1
gi|123382|sp|P07746|HMGT_ONCMYHIGH MOBILITY GROUP-T P... +2   220  3.6e-17   1
gi|600761|gb|AAA57042.1|(L38477) high mobility group ... +2   220  3.6e-17   1

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 873 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|11346370|pir||T51159  HMG protein [imported] - Arabidopsis thaliana
            >gi|2832357|emb|CAA74400.1| (Y14071) HMG protein [Arabidopsis
            thaliana] >gi|3068715|gb|AAC14415.1| (AF049236) unknown
            [Arabidopsis thaliana]
            Length = 178

Frame  2 hits (HSPs):   _______________________________________           
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150

  Plus Strand HSPs:

 Score = 496 (174.6 bits), Expect = 2.1e-46, P = 2.1e-46
 Identities = 99/141 (70%), Positives = 112/141 (79%), Frame = +2

Query:    11 MKTAKGKGAARPSKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAF 190
             MKTAKGK   + +KE+LKPVDDRKVGKRKA  +    R  +KEKKAKKDPNKPKR PSAF
Sbjct:     1 MKTAKGKDKVKTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAF 60

Query:   191 FVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKA 370
             FVFLE+FR TFK ENP VKAVS VGKAGG+KWKS+S AEKAPYE KAAKRKAEYEK + A
Sbjct:    61 FVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDA 120

Query:   371 YEKKQASSADDDESDKSKSEV 433
             Y K     +D  ES+KS+SE+
Sbjct:   121 YNKNLEEGSD--ESEKSRSEI 139


 >gi|7446213|pir||T02252  high mobility group protein HMG-1 - common tobacco
            >gi|2196548|gb|AAB61215.1| (AF002226) DNA-binding protein
            [Nicotiana tabacum]
            Length = 142

Frame  2 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                 |                |               | 142
                       0                50              100

  Plus Strand HSPs:

 Score = 397 (139.8 bits), Expect = 6.4e-36, P = 6.4e-36
 Identities = 77/118 (65%), Positives = 92/118 (77%), Frame = +2

Query:    80 KVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSV 259
             K G     G  +K+   KK KKA KDPNKPKRPPSAFFVF+EEFRKT+K ++P  K+V+ 
Sbjct:     7 KAGADSKLGVRKKATETKKAKKAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAA 66

Query:   260 VGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSKSEV 433
             VGKAGG+ WK LS AEKAPY+AKA KRKAEY+K + AY +KQA  A++DESDKSKSEV
Sbjct:    67 VGKAGGDAWKKLSEAEKAPYQAKAEKRKAEYQKNMDAYNRKQAGDAEEDESDKSKSEV 124

 Score = 360 (126.7 bits), Expect = 5.3e-32, P = 5.3e-32
 Identities = 76/130 (58%), Positives = 91/130 (70%), Frame = +2

Query:    80 KVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSV 259
             K G     G  +K+   KK KKA KDPNKPKRPPSAFFVF+EEFRKT+K ++P  K+V+ 
Sbjct:     7 KAGADSKLGVRKKATETKKAKKAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAA 66

Query:   260 VGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSKSE--- 430
             VGKAGG+ WK LS AEKAPY+AKA KRKAEY+K + AY +KQA  A++DESDKSKSE   
Sbjct:    67 VGKAGGDAWKKLSEAEKAPYQAKAEKRKAEYQKNMDAYNRKQAGDAEEDESDKSKSEVHD 126

Query:   431 ---------- 430
                       
Sbjct:   127 DDDEDDDGSE 136


 >gi|7446212|pir||T07377  high mobility group protein - potato
            >gi|2894109|emb|CAA05365.1| (AJ002391) high mobility group protein
            [Solanum tuberosum]
            Length = 141

Frame  2 hits (HSPs):      _________________________________________      
                        __________________________________________________
Database sequence:     |                 |                 |              | 141
                       0                50               100

  Plus Strand HSPs:

 Score = 387 (136.2 bits), Expect = 7.3e-35, P = 7.3e-35
 Identities = 80/120 (66%), Positives = 94/120 (78%), Frame = +2

Query:    74 DRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAV 253
             D K+G RK      K+   KK K A KDPNKPKRPPSAFFVF+EEFRKT+K ++P  K+V
Sbjct:    11 DTKLGVRK------KATESKKAKNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSV 64

Query:   254 SVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASS-ADDDESDKSKSE 430
             +VVGKAGG+KWK LS  EKAPY+AKA KRKAEY+K + AY KK A+  ADD+ESDKSKSE
Sbjct:    65 AVVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKNMDAYNKKLAAGDADDEESDKSKSE 124

Query:   431 V 433
             V
Sbjct:   125 V 125


 >gi|729736|sp|P40619|HMGL_PHANI  HMG1/2-LIKE PROTEIN >gi|1085860|pir||S40302
            high mobility group protein HMG-1 - Pharbitis nil
            Length = 144

Frame  2 hits (HSPs):   ____________________________________________      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                 |                |               | 144
                       0                50              100
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          27..99
   Entrez               dna-binding site: HMG BOX.               36..105
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           114..144
   PFAM                 HMG_box: HMG (high mobility group) box   36..105
   PRODOM               PD019458: HMGL(1) Q40094(1) O49948(1)    1..32
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      34..106
   PRODOM               PD056523: HMGL_PHANI                     108..131
__________________


  Plus Strand HSPs:

 Score = 372 (131.0 bits), Expect = 2.8e-33, P = 2.8e-33
 Identities = 77/124 (62%), Positives = 99/124 (79%), Frame = +2

Query:    80 KVGKRKASGKPE---KSRAP--KKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLV 244
             K GK KA    +   K +A   KK KKA KDPNKPKRPPSAFFVF+E+FRKT+K ++P  
Sbjct:     2 KGGKSKAKSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNN 61

Query:   245 KAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQAS-SADDDESDKS 421
             K+V+VVGKAGG+KWK L++AEKAP+ +KA KRK EYEK ++AY KKQA+ +A+++ESDKS
Sbjct:    62 KSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEESDKS 121

Query:   422 KSEV 433
             +SEV
Sbjct:   122 RSEV 125


 >gi|1052956|gb|AAC50019.1|  (U39747) high mobility group protein 2 HMG2 [Ipomoea
            nil]
            Length = 146

Frame  2 hits (HSPs):   ______________________________________________    
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100

  Plus Strand HSPs:

 Score = 368 (129.5 bits), Expect = 7.5e-33, P = 7.5e-33
 Identities = 76/124 (61%), Positives = 95/124 (76%), Frame = +2

Query:    80 KVGKRKASGKPE---KSRA--PKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLV 244
             K GK KA    +   K R    KK KK+ KDPNKPKRPPSAFFVF+E+FRKT+K ++P  
Sbjct:     2 KGGKSKAKSDNKLAVKKRGCETKKSKKSVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNN 61

Query:   245 KAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQAS-SADDDESDKS 421
             K+V+ VGKAGG+KWK L+ AEKAP+ AKA KRK EYEK ++AY +KQA  +AD++ESDKS
Sbjct:    62 KSVAAVGKAGGDKWKQLTDAEKAPFIAKAEKRKQEYEKSMQAYNRKQAGEAADEEESDKS 121

Query:   422 KSEV 433
             +SEV
Sbjct:   122 RSEV 125

 Score = 325 (114.4 bits), Expect = 2.7e-28, P = 2.7e-28
 Identities = 72/129 (55%), Positives = 91/129 (70%), Frame = +2

Query:    89 KRKASGK-PEKSRA--PKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSV 259
             K K+  K   K R    KK KK+ KDPNKPKRPPSAFFVF+E+FRKT+K ++P  K+V+ 
Sbjct:     7 KAKSDNKLAVKKRGCETKKSKKSVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAA 66

Query:   260 VGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQAS-SADDDESDKSKS--- 427
             VGKAGG+KWK L+ AEKAP+ AKA KRK EYEK ++AY +KQA  +AD++ESDKS+S   
Sbjct:    67 VGKAGGDKWKQLTDAEKAPFIAKAEKRKQEYEKSMQAYNRKQAGEAADEEESDKSRSEVN 126

Query:   428 --------- 427
                      
Sbjct:   127 DDEEDEDGS 135


 >gi|123379|sp|P26585|HMGL_SOYBN  HMG1/2-LIKE PROTEIN (SB11 PROTEIN)
            >gi|99914|pir||S22309 high mobility group protein HMG-1 - soybean
            >gi|18645|emb|CAA41200.1| (X58245) HMG-1 like protein gene [Glycine
            max]
            Length = 152

Frame  2 hits (HSPs):    ____________________________________________     
Annotated Domains:      ______________________________________  __________
                        __________________________________________________
Database sequence:     |                |               |                || 152
                       0               50             100              150
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          35..107
   Entrez               dna-binding site: HMG BOX.               44..113
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           124..152
   PFAM                 HMG_box: HMG (high mobility group) box   44..113
   PRODOM               PD019461: HMGL(2) Q41026(1)              1..40
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      42..114
__________________


  Plus Strand HSPs:

 Score = 365 (128.5 bits), Expect = 1.6e-32, P = 1.6e-32
 Identities = 77/130 (59%), Positives = 92/130 (70%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFK 226
             SK   K  D +    +K  G   K+R P  + KA KDPNKPKRPPSAFFVF+EEFRK F 
Sbjct:     6 SKTESKRADPKLAVNKK--GAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRKVFN 63

Query:   227 AENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQA---SSA 397
              E+P  KAVS VGKA G KWK++S AEKAPY AK+ KRK EYEK ++AY KKQA   +  
Sbjct:    64 KEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGG 123

Query:   398 DDDESDKSKSEV 433
             D++ES+KS SEV
Sbjct:   124 DEEESEKSVSEV 135


 >gi|11346368|pir||T51597  high mobility group protein HMG-beta1 [validated] -
            Arabidopsis thaliana >gi|2832359|emb|CAA74401.1| (Y14072) HMG
            protein [Arabidopsis thaliana]
            Length = 144

Frame  2 hits (HSPs):    ___________________________________________      
                        __________________________________________________
Database sequence:     |                 |                |               | 144
                       0                50              100

  Plus Strand HSPs:

 Score = 355 (125.0 bits), Expect = 1.8e-31, P = 1.8e-31
 Identities = 74/124 (59%), Positives = 88/124 (70%), Frame = +2

Query:    62 KPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPL 241
             K   + +  K   + KP K     + K A KDPNKPKRP SAFFVF+E+FR+TFK ENP 
Sbjct:     5 KSKTETRSSKLSVTKKPAKGAG--RGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPK 62

Query:   242 VKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK-QASSADDDESDK 418
              K+V+ VGKA G+KWKSLS +EKAPY AKA KRK EYEK IKAY KK +    +D+ESDK
Sbjct:    63 NKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDK 122

Query:   419 SKSEV 433
             S SEV
Sbjct:   123 SVSEV 127


 >gi|541968|pir||S40122  high mobility group protein HMG-1 - garden pea
            >gi|436424|emb|CAA54168.1| (X76774) HMG 1 protein [Pisum sativum]
            Length = 154

Frame  2 hits (HSPs):   _____________________________________________     
Annotated Domains:                 ___________________________            
                        __________________________________________________
Database sequence:     |               |                |               | | 154
                       0              50              100             150
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          36..108
   Entrez               domain: HMG box homology #label HMG1     42..118
__________________


  Plus Strand HSPs:

 Score = 354 (124.6 bits), Expect = 2.3e-31, P = 2.3e-31
 Identities = 78/141 (55%), Positives = 96/141 (68%), Frame = +2

Query:    11 MKTAKGKGAARPSKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAF 190
             MK  K KG ++ ++  L  V+ +     K   KP K + PK       DPNKPKRPPSAF
Sbjct:     1 MKGGKSKGESKKAETKLA-VNKKGAPATKGGKKPAKGKEPK-------DPNKPKRPPSAF 52

Query:   191 FVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKA 370
             FVF+E+FRK FK  N   KAVS VGKA G KWKS++ AEKAPY AKA KRKAEYEK +K+
Sbjct:    53 FVFMEDFRKQFKKGNADNKAVSAVGKAAGAKWKSMTEAEKAPYAAKAEKRKAEYEKSMKS 112

Query:   371 YEKKQASSA----DDDESDKSKSEV 433
             Y KKQA       +++ES+KS+SEV
Sbjct:   113 YNKKQAEGPAAVEEEEESEKSESEV 137


 >gi|7446228|pir||T03375  high mobility group protein HMGd1 - maize
            >gi|2196672|emb|CAA70045.1| (Y08807) HMGd1 [Zea mays]
            Length = 126

Frame  2 hits (HSPs):   _______________________________________________   
                        __________________________________________________
Database sequence:     |                   |                   |          | 126
                       0                  50                 100

  Plus Strand HSPs:

 Score = 353 (124.3 bits), Expect = 2.9e-31, P = 2.9e-31
 Identities = 72/116 (62%), Positives = 85/116 (73%), Frame = +2

Query:    89 KRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGK 268
             K +A      SR   ++ KA+KDPNKPKRPPSAFFVF+EEFRK +K ++P VK VSV+GK
Sbjct:     2 KSRARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGK 61

Query:   269 AGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSAD-DDESDKSKSEV 433
             AGG+KWKSLS AEKAPY +KA K KAEY K I AY  KQ+       +SDKSKSEV
Sbjct:    62 AGGDKWKSLSDAEKAPYVSKAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEV 117


 >gi|11346369|pir||T51598  high mobility group protein HMG-beta2 [validated] -
            Arabidopsis thaliana >gi|1694976|emb|CAA70691.1| (Y09482) HMG1
            [Arabidopsis thaliana] >gi|2832361|emb|CAA74402.1| (Y14073) HMG
            protein [Arabidopsis thaliana]
            Length = 141

Frame  2 hits (HSPs):   ____________________________________________      
                        __________________________________________________
Database sequence:     |                 |                 |              | 141
                       0                50               100

  Plus Strand HSPs:

 Score = 349 (122.9 bits), Expect = 7.8e-31, P = 7.8e-31
 Identities = 75/123 (60%), Positives = 87/123 (70%), Frame = +2

Query:    80 KVGKRKASGKPEKSRAPKKEKK----AKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVK 247
             K  K KA  +  K    KK  K    A KDPNKPKRP SAFFVF+E+FR T+K E+P  K
Sbjct:     2 KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 61

Query:   248 AVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK-QASSADDDESDKSK 424
             +V+ VGKAGGEKWKSLS +EKAPY AKA KRK EYEK +KAY KK +    +D+ESDKS 
Sbjct:    62 SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSV 121

Query:   425 SEV 433
             SEV
Sbjct:   122 SEV 124


 >gi|8886929|gb|AAF80615.1|AC069251_8  (AC069251) F2D10.18 [Arabidopsis thaliana]
            Length = 662

Frame  2 hits (HSPs):                               __________ __________ 
                        __________________________________________________
Database sequence:     |           |          |          |           |    | 662
                       0         150        300        450         600

  Plus Strand HSPs:

 Score = 355 (125.0 bits), Expect = 9.7e-31, P = 9.7e-31
 Identities = 74/124 (59%), Positives = 88/124 (70%), Frame = +2

Query:    62 KPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPL 241
             K   + +  K   + KP K     + K A KDPNKPKRP SAFFVF+E+FR+TFK ENP 
Sbjct:   382 KSKTETRSSKLSVTKKPAKGAG--RGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPK 439

Query:   242 VKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK-QASSADDDESDK 418
              K+V+ VGKA G+KWKSLS +EKAPY AKA KRK EYEK IKAY KK +    +D+ESDK
Sbjct:   440 NKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDK 499

Query:   419 SKSEV 433
             S SEV
Sbjct:   500 SVSEV 504

 Score = 349 (122.9 bits), Expect = 4.4e-30, P = 4.4e-30
 Identities = 75/123 (60%), Positives = 87/123 (70%), Frame = +2

Query:    80 KVGKRKASGKPEKSRAPKKEKK----AKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVK 247
             K  K KA  +  K    KK  K    A KDPNKPKRP SAFFVF+E+FR T+K E+P  K
Sbjct:   523 KGAKSKAETRSTKLSVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNK 582

Query:   248 AVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK-QASSADDDESDKSK 424
             +V+ VGKAGGEKWKSLS +EKAPY AKA KRK EYEK +KAY KK +    +D+ESDKS 
Sbjct:   583 SVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSV 642

Query:   425 SEV 433
             SEV
Sbjct:   643 SEV 645


 >gi|3885888|gb|AAC78104.1|  (AF093632) high mobility group protein [Oryza
            sativa]
            Length = 157

Frame  2 hits (HSPs):   _________________________________________________ 
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 346 (121.8 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 82/141 (58%), Positives = 98/141 (69%), Frame = +2

Query:    11 MKTAKGKGAARPSKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAF 190
             MK AK KGAA+P         D K+   K+ G  EK  A  ++ KA KDPNKPKR PSAF
Sbjct:     1 MKGAKSKGAAKP---------DAKLAV-KSKGA-EKPAAKGRKGKAGKDPNKPKRAPSAF 49

Query:   191 FVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKA 370
             FVF+EEFRK FK +NP  K+V+ VGKA G++WKSL+ A+KAPY AKA K KAEY K I A
Sbjct:    50 FVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYVAKANKLKAEYNKAIAA 109

Query:   371 YEK----------KQASSADDDESDKSKSEV 433
             Y K          K+    D++ESDKSKSEV
Sbjct:   110 YNKGESTAKKAPAKEEEEDDEEESDKSKSEV 140

 Score = 86 (30.3 bits), Expect = 0.39, P = 0.32
 Identities = 42/152 (27%), Positives = 70/152 (46%), Frame = +2

Query:    11 MKTAKGKGAARP-SKESLKPVDDRKV---GKRKASGK-PEK-SRAPK------KE-KKAK 151
             MK AK KGAA+P +K ++K     K    G++  +GK P K  RAP       +E +K  
Sbjct:     1 MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 60

Query:   152 KDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKA 331
             K+ N   +  +A      +  K+   E      V+   K   E  K++++  K    AK 
Sbjct:    61 KEKNPKNKSVAAVGKAAGDRWKSL-TEADKAPYVAKANKLKAEYNKAIAAYNKGESTAKK 119

Query:   332 AKRKAEYEKLIKAYEKKQASSADDDESDKSKSE 430
             A  K E E   +  +K ++   D+D+ + S+ +
Sbjct:   120 APAKEEEEDDEEESDKSKSEVNDEDDDEGSEED 152

 Score = 81 (28.5 bits), Expect = 1.8, P = 0.83
 Identities = 43/154 (27%), Positives = 69/154 (44%), Frame = +2

Query:    11 MKTAKGKGAARP-SKESLKPVDDRKV---GKRKASGK-PEK-SRAPK------KE-KKAK 151
             MK AK KGAA+P +K ++K     K    G++  +GK P K  RAP       +E +K  
Sbjct:     1 MKGAKSKGAAKPDAKLAVKSKGAEKPAAKGRKGKAGKDPNKPKRAPSAFFVFMEEFRKEF 60

Query:   152 KDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKA 331
             K+ N   +  +A      +  K+   E      V+   K   E  K++++  K    AK 
Sbjct:    61 KEKNPKNKSVAAVGKAAGDRWKSL-TEADKAPYVAKANKLKAEYNKAIAAYNKGESTAKK 119

Query:   332 AKRKAEYEKLIKAYEKKQA--SSADDDESDKSKSE 430
             A  K E E   +  +K ++  +  DDDE  +   +
Sbjct:   120 APAKEEEEDDEEESDKSKSEVNDEDDDEGSEEDED 154


 >gi|7446231|pir||T09581  probable high mobility group protein HMG1 - sword bean
            >gi|1813329|dbj|BAA19156.1| (AB000637) HMG-1 [Canavalia gladiata]
            Length = 141

Frame  2 hits (HSPs):    ____________________________________________     
                        __________________________________________________
Database sequence:     |                 |                 |              | 141
                       0                50               100

  Plus Strand HSPs:

 Score = 346 (121.8 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 73/128 (57%), Positives = 93/128 (72%), Frame = +2

Query:    50 KESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKA 229
             K   K  D+R   KRK +G   K     + KKA KDPNKPKRPPSAFFVF+ EFR+ +K 
Sbjct:     5 KADAKAADNRL--KRKGAGAGRK-----QSKKAAKDPNKPKRPPSAFFVFMSEFREQYKK 57

Query:   230 ENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASS--ADD 403
             E+P  K+V+VVGKAGG+KWKSLS AEKAP+ A+A K+K EY+K I AY +K      +++
Sbjct:    58 EHPTNKSVAVVGKAGGDKWKSLSDAEKAPFVARAEKKKEEYDKSILAYNRKLEGKNPSEE 117

Query:   404 DESDKSKSEV 433
             ++SDKSKSEV
Sbjct:   118 EKSDKSKSEV 127


 >gi|123378|sp|P27347|MNBB_MAIZE  DNA-BINDING PROTEIN MNB1B (HMG1-LIKE PROTEIN)
            >gi|100886|pir||S16670 high mobility group protein - maize
            >gi|539062|pir||B47150 high mobility group protein MNB1b - maize
            >gi|22329|emb|CAA41220.1| (X58282) high mobility group protein [Zea
            mays] >gi|5441502|emb|CAB46752.1| (AJ131373) HMGa protein [Zea
            mays]
            Length = 157

Frame  2 hits (HSPs):   _____________________________________________     
Annotated Domains:      ___________________________________    ___________
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          32..104
   Entrez               dna-binding site: HMG BOX.               41..110
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           124..157
   Entrez               phosphorylation site: (BY CK2) (POTENTIA 149
   PFAM                 HMG_box: HMG (high mobility group) box   41..110
   PRODOM               PD019460: HMGL(1) Q43481(1) Q9ZSU6(1)    1..37
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      39..110
__________________


  Plus Strand HSPs:

 Score = 339 (119.3 bits), Expect = 8.9e-30, P = 8.9e-30
 Identities = 80/141 (56%), Positives = 98/141 (69%), Frame = +2

Query:    11 MKTAKGKGAARPSKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAF 190
             MK AK KGAA+         D +   K K + KP K R    + KA KDPNKPKR PSAF
Sbjct:     1 MKGAKSKGAAK--------ADAKLAVKSKGAEKPAKGR----KGKAGKDPNKPKRAPSAF 48

Query:   191 FVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKA 370
             FVF+EEFRK FK +NP  K+V+ VGKA G++WKSLS ++KAPY AKA K K EY K I A
Sbjct:    49 FVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAA 108

Query:   371 YEKKQASSA-----------DDDESDKSKSEV 433
             Y K ++++A           D++ESDKSKSEV
Sbjct:   109 YNKGESTAAKKAPAKEEEEEDEEESDKSKSEV 140


 >gi|7446229|pir||T03640  high mobility group protein MNB1b - maize (fragment)
            >gi|397396|emb|CAA46876.1| (X66077) DNA-binding protein [Zea mays]
            Length = 168

Frame  2 hits (HSPs):      __________________________________________     
                        __________________________________________________
Database sequence:     |              |              |              |     | 168
                       0             50            100            150

  Plus Strand HSPs:

 Score = 339 (119.3 bits), Expect = 8.9e-30, P = 8.9e-30
 Identities = 80/141 (56%), Positives = 98/141 (69%), Frame = +2

Query:    11 MKTAKGKGAARPSKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAF 190
             MK AK KGAA+         D +   K K + KP K R    + KA KDPNKPKR PSAF
Sbjct:    12 MKGAKSKGAAK--------ADAKLAVKSKGAEKPAKGR----KGKAGKDPNKPKRAPSAF 59

Query:   191 FVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKA 370
             FVF+EEFRK FK +NP  K+V+ VGKA G++WKSLS ++KAPY AKA K K EY K I A
Sbjct:    60 FVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAA 119

Query:   371 YEKKQASSA-----------DDDESDKSKSEV 433
             Y K ++++A           D++ESDKSKSEV
Sbjct:   120 YNKGESTAAKKAPAKEEEEEDEEESDKSKSEV 151


 >gi|729737|sp|P40620|HMGL_VICFA  HMG1/2-LIKE PROTEIN >gi|541981|pir||S39556 high
            mobility group protein HMG - fava bean
            Length = 149

Frame  2 hits (HSPs):   _________________________________________________ 
Annotated Domains:      _______________________________________ __________
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          36..108
   Entrez               dna-binding site: HMG BOX.               45..114
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           121..149
   PFAM                 HMG_box: HMG (high mobility group) box   45..114
   PRODOM               PD019461: HMGL(2) Q41026(1)              1..41
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      43..115
__________________


  Plus Strand HSPs:

 Score = 326 (114.8 bits), Expect = 2.1e-28, P = 2.1e-28
 Identities = 69/141 (48%), Positives = 91/141 (64%), Frame = +2

Query:    11 MKTAKGKGAARPSKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAF 190
             MK  K KG ++ ++  L  V+ +     K   KP K + PK       DPNKPKRPPSAF
Sbjct:     1 MKGGKSKGESKKAETKLA-VNKKGAAATKGGKKPAKGKEPK-------DPNKPKRPPSAF 52

Query:   191 FVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKA 370
             FVF+ +FR+ +K ++P  K+V+ VGKA GE+WKSLS  EKAPY  +A K+K EYE  ++A
Sbjct:    53 FVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQA 112

Query:   371 YEKKQASSADDDESDKSKSEV 433
             Y KK     D++ SDKSKSEV
Sbjct:   113 YNKKLEGKDDEEGSDKSKSEV 133

 Score = 285 (100.3 bits), Expect = 4.7e-24, P = 4.7e-24
 Identities = 68/147 (46%), Positives = 90/147 (61%), Frame = +2

Query:    11 MKTAKGKGAARPSKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAF 190
             MK  K KG ++ ++  L  V+ +     K   KP K + PK       DPNKPKRPPSAF
Sbjct:     1 MKGGKSKGESKKAETKLA-VNKKGAAATKGGKKPAKGKEPK-------DPNKPKRPPSAF 52

Query:   191 FVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKA 370
             FVF+ +FR+ +K ++P  K+V+ VGKA GE+WKSLS  EKAPY  +A K+K EYE  ++A
Sbjct:    53 FVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQA 112

Query:   371 YEKKQASSADDDESDKSKSE--------------- 430
             Y KK     D++ SDKSKSE               
Sbjct:   113 YNKKLEGKDDEEGSDKSKSEVNDEDEDEEDEEDED 147


 >gi|729738|sp|P40621|HMGL_WHEAT  HMG1/2-LIKE PROTEIN >gi|100791|pir||S18991 high
            mobility group protein - wheat >gi|21803|emb|CAA77641.1| (Z11540)
            high mobility group protein [Triticum aestivum]
            Length = 161

Frame  2 hits (HSPs):   _____________________________________________     
Annotated Domains:      ___________________________________     __________
                        __________________________________________________
Database sequence:     |               |              |               |   | 161
                       0              50            100             150
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          33..105
   Entrez               dna-binding site: HMG BOX.               42..111
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           130..161
   PFAM                 HMG_box: HMG (high mobility group) box   42..111
   PRODOM               PD019460: HMGL(1) Q43481(1) Q9ZSU6(1)    1..38
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      40..111
__________________


  Plus Strand HSPs:

 Score = 326 (114.8 bits), Expect = 2.1e-28, P = 2.1e-28
 Identities = 80/144 (55%), Positives = 98/144 (68%), Frame = +2

Query:    11 MKTAKGKGAARPSKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAF 190
             MK AK KGAA+          D K+   K+ G  EK  A  K+ KA KDPNKPKR PSAF
Sbjct:     1 MKGAKSKGAAKA---------DAKLAV-KSKGA-EKPAAKGKKGKAGKDPNKPKRAPSAF 49

Query:   191 FVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKA 370
             FVF+ EFR+ FK +NP  K+V+ VGKA GE+WKSLS +EKAPY AKA K K EY K I A
Sbjct:    50 FVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAA 109

Query:   371 YEKKQASSA--------------DDDESDKSKSEV 433
             Y K ++++A              D++ESDKSKSE+
Sbjct:   110 YNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEI 144


 >gi|950053|emb|CAA90679.1|  (Z50799) HMG1/2-like protein [Hordeum vulgare]
            Length = 160

Frame  2 hits (HSPs):   _____________________________________________     
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150

  Plus Strand HSPs:

 Score = 325 (114.4 bits), Expect = 2.7e-28, P = 2.7e-28
 Identities = 80/143 (55%), Positives = 97/143 (67%), Frame = +2

Query:    11 MKTAKGKGAARPSKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAF 190
             MK AK KGAA+         D +   K K + KP    A  K+ KA KDPNKPKR PSAF
Sbjct:     1 MKGAKSKGAAK--------ADTKLAVKSKGAEKPA---AKGKKGKAGKDPNKPKRAPSAF 49

Query:   191 FVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKA 370
             FVF+ EFR+ FK +NP  K+V+ VGKA GE+WKSLS +EKAP+ AKA K K EY K I +
Sbjct:    50 FVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPFVAKANKLKGEYNKAIAS 109

Query:   371 YEK--------KQASSA-----DDDESDKSKSEV 433
             Y K        K+ASS      D++ESDKSKSE+
Sbjct:   110 YNKGESTTAAPKKASSKEVEEEDEEESDKSKSEI 143

 Score = 94 (33.1 bits), Expect = 0.036, P = 0.035
 Identities = 48/143 (33%), Positives = 72/143 (50%), Frame = +2

Query:    11 MKTAKGKGAARP-SKESLKPVDDRKV---GKRKASGK-PEK-SRAPK---------KEKK 145
             MK AK KGAA+  +K ++K     K    GK+  +GK P K  RAP          +E+ 
Sbjct:     1 MKGAKSKGAAKADTKLAVKSKGAEKPAAKGKKGKAGKDPNKPKRAPSAFFVFMGEFREEF 60

Query:   146 AKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEA 325
              +K+P K K   +      E ++   ++E      V+   K  GE  K+++S  K     
Sbjct:    61 KQKNP-KNKSVAAVGKAAGERWKSLSESEK--APFVAKANKLKGEYNKAIASYNKGE-ST 116

Query:   326 KAAKRKAEYEKLIKAYEKKQASSADDDESDKSKSEV 433
              AA +KA           K+    D++ESDKSKSE+
Sbjct:   117 TAAPKKAS---------SKEVEEEDEEESDKSKSEI 143


 >gi|11346367|pir||T51596  high mobility group protein HMG-gamma [validated] -
            Arabidopsis thaliana >gi|2832355|emb|CAA74403.1| (Y14074) HMG
            protein [Arabidopsis thaliana]
            Length = 138

Frame  2 hits (HSPs):         _______________________________________     
                        __________________________________________________
Database sequence:     |                 |                 |              | 138
                       0                50               100

  Plus Strand HSPs:

 Score = 321 (113.0 bits), Expect = 7.2e-28, P = 7.2e-28
 Identities = 64/108 (59%), Positives = 78/108 (72%), Frame = +2

Query:   116 KSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSL 295
             K+R  K  KK KKDPN+PKRPPSAFFVFLE+FRK F   NP  K+V+ VGKA G +WKS+
Sbjct:    18 KTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKSM 77

Query:   296 SSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA--DDDESDKSKSEV 433
             +  +KAPY AKA  RK EY K ++ Y  K AS    ++D+SDKSKSEV
Sbjct:    78 TDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREEDDSDKSKSEV 125


 >gi|4914377|gb|AAD32913.1|AC007584_11  (AC007584) putative HMG protein
            [Arabidopsis thaliana]
            Length = 138

Frame  2 hits (HSPs):         _______________________________________     
                        __________________________________________________
Database sequence:     |                 |                 |              | 138
                       0                50               100

  Plus Strand HSPs:

 Score = 318 (111.9 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 63/108 (58%), Positives = 78/108 (72%), Frame = +2

Query:   116 KSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSL 295
             K+R  K  KK KKDPN+PKRPPSAFFVFLE+FRK F   NP  K+V+ VGKA G +WK++
Sbjct:    18 KTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAM 77

Query:   296 SSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA--DDDESDKSKSEV 433
             +  +KAPY AKA  RK EY K ++ Y  K AS    ++D+SDKSKSEV
Sbjct:    78 TDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREEDDSDKSKSEV 125


 >gi|7446227|pir||T03374  high mobility group protein HMGc2 - maize
            >gi|1845197|emb|CAA69606.1| (Y08298) HMGc2 [Zea mays]
            Length = 138

Frame  2 hits (HSPs):   _____________________________________________     
                        __________________________________________________
Database sequence:     |                 |                 |              | 138
                       0                50               100

  Plus Strand HSPs:

 Score = 255 (89.8 bits), Expect = 7.1e-21, P = 7.1e-21
 Identities = 60/121 (49%), Positives = 77/121 (63%), Frame = +2

Query:    86 GKRKASGKPE-KSRA----PKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA 250
             GK  AS K E + RA      K KKA     KPKRPPSAFFVF+ EFR+ ++A++P  K+
Sbjct:     3 GKANASKKDEARLRAGGGGAGKRKKAAAS-GKPKRPPSAFFVFMSEFRQEYQAQHPGNKS 61

Query:   251 VSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASS-ADDDESDKSKS 427
             V+ V KA GEKW+S+S  EK PY  +A ++K +YEK     EK  +S  A  D+ D SKS
Sbjct:    62 VAAVSKAAGEKWRSMSEQEKQPYVDQAGQKKQDYEKTKANIEKSTSSKKAKTDDDDGSKS 121

Query:   428 EV 433
             EV
Sbjct:   122 EV 123

 Score = 248 (87.3 bits), Expect = 3.9e-20, P = 3.9e-20
 Identities = 52/100 (52%), Positives = 68/100 (68%), Frame = +2

Query:   134 KEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKA 313
             K KKA     KPKRPPSAFFVF+ EFR+ ++A++P  K+V+ V KA GEKW+S+S  EK 
Sbjct:    24 KRKKAAAS-GKPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMSEQEKQ 82

Query:   314 PYEAKAAKRKAEYEKLIKAYEKKQASS-ADDDESDKSKSEV 433
             PY  +A ++K +YEK     EK  +S  A  D+ D SKSEV
Sbjct:    83 PYVDQAGQKKQDYEKTKANIEKSTSSKKAKTDDDDGSKSEV 123


 >gi|7446226|pir||T03372  high mobility group protein HMGc1 - maize
            >gi|1845195|emb|CAA69605.1| (Y08297) HMGc1 [Zea mays]
            >gi|5441504|emb|CAB46753.1| (AJ131374) HMGc1 protein [Zea mays]
            Length = 139

Frame  2 hits (HSPs):     ______________________________________________  
                        __________________________________________________
Database sequence:     |                 |                 |              | 139
                       0                50               100

  Plus Strand HSPs:

 Score = 250 (88.0 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 53/116 (45%), Positives = 76/116 (65%), Frame = +2

Query:    92 RKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKA 271
             +K  G+     A  K KKA     KPKRPPSAFFVF+ EFR+ ++A +P  K+V+ V KA
Sbjct:     9 KKDEGRLRAGGAAGKRKKAAAS-GKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKA 67

Query:   272 GGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASS---ADDDESDKSKSEV 433
              GEKW+++S  EK PY  +A ++K +YEK    ++KK+++S   A  ++ D SKSEV
Sbjct:    68 AGEKWRAMSDQEKQPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSEV 124

 Score = 220 (77.4 bits), Expect = 3.6e-17, P = 3.6e-17
 Identities = 51/126 (40%), Positives = 73/126 (57%), Frame = +2

Query:    92 RKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKA 271
             +K  G+     A  K KKA     KPKRPPSAFFVF+ EFR+ ++A +P  K+V+ V KA
Sbjct:     9 KKDEGRLRAGGAAGKRKKAAAS-GKPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKA 67

Query:   272 GGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSAD--------------DDE 409
              GEKW+++S  EK PY  +A ++K +YEK    ++KK+++S+               DDE
Sbjct:    68 AGEKWRAMSDQEKQPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSEVDDE 127

Query:   410 SDKSKSE 430
                S  E
Sbjct:   128 DGSSDEE 134


 >gi|4468042|emb|CAB37859.1|  (Z21703) HMG_box [Vicia faba]
            Length = 74

Frame  2 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |            |             |            |          | 74
                       0           20            40           60

  Plus Strand HSPs:

 Score = 248 (87.3 bits), Expect = 3.9e-20, P = 3.9e-20
 Identities = 46/74 (62%), Positives = 59/74 (79%), Frame = +2

Query:   152 KDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKA 331
             KDPNKPKRPPSAFFVF+ +FR+ +K ++P  K+V+ VGKA GE+WKSLS  EKAPY  +A
Sbjct:     1 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRA 60

Query:   332 AKRKAEYEKLIKAY 373
              K+K EYE  ++AY
Sbjct:    61 LKKKEEYEITLQAY 74


 >gi|7446230|pir||T04662  high mobility group protein HMG-delta [validated] -
            Arabidopsis thaliana >gi|2832363|emb|CAA74404.1| (Y14075) HMG
            protein [Arabidopsis thaliana] >gi|3367575|emb|CAA20027.1|
            (AL031135) HMG delta protein [Arabidopsis thaliana]
            >gi|7270508|emb|CAB80273.1| (AL161587) HMG delta protein
            [Arabidopsis thaliana]
            Length = 125

Frame  2 hits (HSPs):         ____________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 125
                       0                  50                 100

  Plus Strand HSPs:

 Score = 238 (83.8 bits), Expect = 4.5e-19, P = 4.5e-19
 Identities = 47/108 (43%), Positives = 71/108 (65%), Frame = +2

Query:   116 KSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSL 295
             K R  K  KK K DPN+PK+PPS FFVFL++FRK F   NP  K+V  VG+A G+KWK++
Sbjct:    18 KVRGNKVGKKTK-DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTM 76

Query:   296 SSAEKAPYEAKAAKRKAEYEKLIKAYEKKQAS----SADDDESDKSKSE 430
             +  E+AP+ AK+  +K EY   ++ Y  + A+    + DD++ +K+  +
Sbjct:    77 TEEERAPFVAKSQSKKTEYAVTMQQYNMELANGNKTTGDDEKQEKAADD 125


 >gi|729728|sp|P40618|HMGA_CHICK  HIGH MOBILITY GROUP PROTEIN HMG2A (HMG-2A)
            >gi|63494|emb|CAA45065.1| (X63463) HMG2a [Gallus gallus]
            Length = 202

Frame  2 hits (HSPs):   _________________________________________         
Annotated Domains:      ___________________________________________       
                        __________________________________________________
Database sequence:     |            |           |           |            || 202
                       0           50         100         150          200
__________________

Annotated Domains:
   BLOCKS               BL00353A: HMG1/2 proteins.               1..49
   BLOCKS               BL00353B: HMG1/2 proteins.               75..124
   BLOCKS               BL00353C: HMG1/2 proteins.               125..171
   DOMO                 DM00056: HMGBOX                          1..76
   DOMO                 DM00056: HMGBOX                          78..154
   Entrez               dna-binding site: HMG BOX 1.             9..79
   Entrez               dna-binding site: HMG BOX 2.             93..161
   PFAM                 HMG_box: HMG (high mobility group) box   5..78
   PFAM                 HMG_box: HMG (high mobility group) box   92..160
   PRINTS               1: High mobility group prote 39..61
   PRINTS               2: High mobility group prote 62..82
   PRINTS               3: High mobility group prote 107..125
   PRINTS               4: High mobility group prote 125..144
   PRINTS               5: High mobility group prote 144..164
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      7..81
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      90..162
   PROSITE              HMG1_2: HMG1/2 signature.                41..52
__________________


  Plus Strand HSPs:

 Score = 230 (81.0 bits), Expect = 3.2e-18, P = 3.2e-18
 Identities = 51/112 (45%), Positives = 63/112 (56%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFK 226
             SKE  K  D+     +    +  K   P K  K KKDPN PKRPPSAFF+F  EFR   K
Sbjct:    54 SKEKAK-FDEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSAFFLFCSEFRPKIK 112

Query:   227 AENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK 382
             + NP + ++  V K  GE W +LS  EK PY  KAAK K +YEK +  Y+ K
Sbjct:   113 STNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSK 163

 Score = 130 (45.8 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 29/77 (37%), Positives = 43/77 (55%), Frame = +2

Query:   146 AKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYE 322
             AK DP KPK   SA+  F++  R+  K +NP V    +   K   E+WK++SS EKA ++
Sbjct:     2 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFD 61

Query:   323 AKAAKRKAEYEKLIKAY 373
               A   K  Y++ +K Y
Sbjct:    62 EMAKADKVRYDREMKDY 78


 >gi|4140289|emb|CAA76978.1|  (Y17968) high mobility group 1 protein [Gallus
            gallus]
            Length = 215

Frame  2 hits (HSPs):   ___________________________________________       
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 228 (80.3 bits), Expect = 5.1e-18, P = 5.1e-18
 Identities = 57/131 (43%), Positives = 74/131 (56%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             SKE  K  D  K  K +   + +    PK E K K KDPN PKRPPSAFF+F  EFR   
Sbjct:    54 SKEKGKFEDMAKADKLRYEKEMKNYVPPKGETKKKFKDPNAPKRPPSAFFLFCSEFRPKI 113

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADD 403
             K E+P + ++  V K  GE W + ++ +K PYE KAAK K +YEK I AY  K    A  
Sbjct:   114 KGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKVDAGK 172

Query:   404 D---ESDKSKSE 430
                 +++KSK +
Sbjct:   173 KVVAKAEKSKKK 184

 Score = 117 (41.2 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 27/76 (35%), Positives = 40/76 (52%), Frame = +2

Query:   149 KKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEA 325
             K DP KP+   S++  F++  R+  K ++P      S   K   E+WK++SS EK  +E 
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFED 62

Query:   326 KAAKRKAEYEKLIKAY 373
              A   K  YEK +K Y
Sbjct:    63 MAKADKLRYEKEMKNY 78


 >gi|5815432|gb|AAD52670.1|AF178849_1  (AF178849) high mobility group protein
            HMG1 [Gallus gallus]
            Length = 214

Frame  2 hits (HSPs):   ___________________________________________       
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 214
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 228 (80.3 bits), Expect = 5.1e-18, P = 5.1e-18
 Identities = 57/131 (43%), Positives = 74/131 (56%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             SKE  K  D  K  K +   + +    PK E K K KDPN PKRPPSAFF+F  EFR   
Sbjct:    54 SKEKGKFEDMAKADKLRYEKEMKNYVPPKGETKKKFKDPNAPKRPPSAFFLFCSEFRPKI 113

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADD 403
             K E+P + ++  V K  GE W + ++ +K PYE KAAK K +YEK I AY  K    A  
Sbjct:   114 KGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKVDAGK 172

Query:   404 D---ESDKSKSE 430
                 +++KSK +
Sbjct:   173 KVVAKAEKSKKK 184

 Score = 117 (41.2 bits), Expect = 7.4e-05, P = 7.4e-05
 Identities = 27/76 (35%), Positives = 40/76 (52%), Frame = +2

Query:   149 KKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEA 325
             K DP KP+   S++  F++  R+  K ++P      S   K   E+WK++SS EK  +E 
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSSKEKGKFED 62

Query:   326 KAAKRKAEYEKLIKAY 373
              A   K  YEK +K Y
Sbjct:    63 MAKADKLRYEKEMKNY 78


 >gi|9759080|dbj|BAB09558.1|  (AB018110) gene_id:K19M13.4~unknown protein
            [Arabidopsis thaliana]
            Length = 226

Frame  2 hits (HSPs):                 __________________________          
                        __________________________________________________
Database sequence:     |          |          |          |           |     | 226
                       0         50        100        150         200

  Plus Strand HSPs:

 Score = 227 (79.9 bits), Expect = 6.6e-18, P = 6.6e-18
 Identities = 52/121 (42%), Positives = 74/121 (61%), Frame = +2

Query:    62 KPVDDRKVGKRKASG-KPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENP 238
             KP + +K     + G KP++ +    EKK+    NKPKRP +AFF+F+ +FRKTFK+E+ 
Sbjct:    67 KPAEKKKT---TSDGPKPKRLKKTNDEKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHN 123

Query:   239 LVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDK 418
                A     K GGEKWKSL+  EK  Y  KAA+ KAEY K +      +++ AD++E D+
Sbjct:   124 GSLAKDAA-KIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSL------ESNDADEEEEDE 176

Query:   419 SK 424
              K
Sbjct:   177 EK 178


 >gi|478622|pir||S22359  nonhistone chromosomal protein HMG-2a - chicken
            Length = 202

Frame  2 hits (HSPs):   _________________________________________         
Annotated Domains:       ____________________ ___________________         
                        __________________________________________________
Database sequence:     |            |           |           |            || 202
                       0           50         100         150          200
__________________

Annotated Domains:
   Entrez               domain: HMG box homology #label HMG1     6..83
   Entrez               domain: HMG box homology #label HMG2     90..164
   PROSITE              HMG1_2: HMG1/2 signature.                41..52
__________________


  Plus Strand HSPs:

 Score = 226 (79.6 bits), Expect = 8.4e-18, P = 8.4e-18
 Identities = 50/112 (44%), Positives = 62/112 (55%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFK 226
             SKE  K  D+     +    +  K   P K  K KKDPN PKRPPS FF+F  EFR   K
Sbjct:    54 SKEKAK-FDEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIK 112

Query:   227 AENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK 382
             + NP + ++  V K  GE W +LS  EK PY  KAAK K +YEK +  Y+ K
Sbjct:   113 STNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSK 163

 Score = 130 (45.8 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 29/77 (37%), Positives = 43/77 (55%), Frame = +2

Query:   146 AKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYE 322
             AK DP KPK   SA+  F++  R+  K +NP V    +   K   E+WK++SS EKA ++
Sbjct:     2 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKAKFD 61

Query:   323 AKAAKRKAEYEKLIKAY 373
               A   K  Y++ +K Y
Sbjct:    62 EMAKADKVRYDREMKDY 78


 >gi|547652|sp|P36194|HMG1_CHICK  HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1)
            >gi|2119030|pir||I50254 HMG-1 - chicken >gi|391636|dbj|BAA03260.1|
            (D14314) HMG-1 [Gallus gallus]
            Length = 201

Frame  2 hits (HSPs):   _________________________________________         
Annotated Domains:      ___________________________________________ ______
                        __________________________________________________
Database sequence:     |            |           |            |           || 201
                       0           50         100          150         200
__________________

Annotated Domains:
   BLOCKS               BL00353A: HMG1/2 proteins.               1..49
   BLOCKS               BL00353B: HMG1/2 proteins.               74..123
   BLOCKS               BL00353C: HMG1/2 proteins.               124..170
   DOMO                 DM00056: HMGBOX                          1..75
   DOMO                 DM00056: HMGBOX                          77..153
   Entrez               dna-binding site: HMG BOX 1.             9..78
   Entrez               dna-binding site: HMG BOX 2.             92..160
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           181..201
   PFAM                 HMG_box: HMG (high mobility group) box   5..77
   PFAM                 HMG_box: HMG (high mobility group) box   91..159
   PRINTS               1: High mobility group prote 38..60
   PRINTS               2: High mobility group prote 61..81
   PRINTS               3: High mobility group prote 106..124
   PRINTS               4: High mobility group prote 124..143
   PRINTS               5: High mobility group prote 143..163
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      7..80
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      89..161
   PROSITE              HMG1_2: HMG1/2 signature.                40..51
__________________


  Plus Strand HSPs:

 Score = 226 (79.6 bits), Expect = 8.4e-18, P = 8.4e-18
 Identities = 50/112 (44%), Positives = 62/112 (55%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFK 226
             SKE  K  D+     +    +  K   P K  K KKDPN PKRPPS FF+F  EFR   K
Sbjct:    53 SKEKAK-FDEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIK 111

Query:   227 AENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK 382
             + NP + ++  V K  GE W +LS  EK PY  KAAK K +YEK +  Y+ K
Sbjct:   112 STNPGI-SIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSK 162

 Score = 122 (42.9 bits), Expect = 7.4e-06, P = 7.4e-06
 Identities = 29/76 (38%), Positives = 43/76 (56%), Frame = +2

Query:   146 AKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYE 322
             AK DP KPK   SA+  F++  R+  K +NP V    +   K   E+WK++SS EKA ++
Sbjct:     2 AKGDPKKPKGKMSAYAFFVQTCREEHK-KNPEVPVNFAEFSKKCSERWKTMSSKEKAKFD 60

Query:   323 AKAAKRKAEYEKLIKAY 373
               A   K  Y++ +K Y
Sbjct:    61 EMAKADKVRYDREMKDY 77


 >gi|5764678|gb|AAC27650.2|  (AF078817) high mobility group protein [Spalax
            ehrenbergi]
            Length = 215

Frame  2 hits (HSPs):   ______________________________________________    
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 225 (79.2 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 56/142 (39%), Positives = 78/142 (54%), Frame = +2

Query:    14 KTAKGKGAARPSKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAF 190
             K    +   + +KE  K  D  K  K +   + +    PK E K K KDPN PKRPPSAF
Sbjct:    43 KKCSERWKTKSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF 102

Query:   191 FVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKA 370
             F+F  E+R   K E+P + ++  V K  GE W + ++ +K PYE KAAK K +YEK I A
Sbjct:   103 FLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAA 161

Query:   371 YEKK---QASSADDDESDKSKSE 430
             Y  K    A+     +++KSK +
Sbjct:   162 YRAKGKPDAAKKGVVKAEKSKKK 184

 Score = 145 (51.0 bits), Expect = 3.2e-09, P = 3.2e-09
 Identities = 47/149 (31%), Positives = 69/149 (46%), Frame = +2

Query:    23 KGKGAARPSK-ESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVF 199
             K K A    K E +   D  +  +   +  P K    KK K    DPN PKRPPSAFF+F
Sbjct:    50 KTKSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFK----DPNAPKRPPSAFFLF 105

Query:   200 LEEFRKTFKAENPLVKAVSVVGKAGG----------EKWKSLSSAEKAPYE----AKAAK 337
               E+R   K E+P +    V  K G           + ++  ++  K  YE    A  AK
Sbjct:   106 CSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165

Query:   338 RKAEYEK--LIKAYEKKQASSADDDESDKSKSE 430
              K +  K  ++KA + K+    ++DE D+ + E
Sbjct:   166 GKPDAAKKGVVKAEKSKKKKEEEEDEEDEEEEE 198

 Score = 114 (40.1 bits), Expect = 0.00021, P = 0.00021
 Identities = 26/76 (34%), Positives = 40/76 (52%), Frame = +2

Query:   149 KKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEA 325
             K DP KP+   S++  F++  R+  K ++P      S   K   E+WK+ S+ EK  +E 
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTKSAKEKGKFED 62

Query:   326 KAAKRKAEYEKLIKAY 373
              A   KA YE+ +K Y
Sbjct:    63 MAKADKARYEREMKTY 78


 >gi|11321591  ref|NP_002120.1| high-mobility group (nonhistone chromosomal)
            protein 2 [Homo sapiens] >gi|12730730 ref|XP_011179.1|
            high-mobility group (nonhistone chromosomal) protein 2 [Homo
            sapiens] >gi|123374|sp|P26583|HMG2_HUMAN HIGH MOBILITY GROUP
            PROTEIN HMG2 (HMG-2) >gi|70785|pir||NSHUH2 nonhistone chromosomal
            protein HMG-2 - human >gi|32333|emb|CAA44395.1| (X62534) HMG-2
            [Homo sapiens] >gi|184236|gb|AAA58659.1| (M83665) high mobility
            group 2 protein [Homo sapiens] >gi|12654171|gb|AAH00903.1|AAH00903
            (BC000903) high-mobility group (nonhistone chromosomal) protein 2
            [Homo sapiens] >gi|12654471|gb|AAH01063.1|AAH01063 (BC001063)
            high-mobility group (nonhistone chromosomal) protein 2 [Homo
            sapiens] >gi|738688|prf||2001363A high mobility group protein 2
            [Homo sapiens]
            Length = 209

Frame  2 hits (HSPs):   _________________________________________         
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 209
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 225 (79.2 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 53/117 (45%), Positives = 67/117 (57%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKK-DPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K  K +   + +    PK +KK KK DPN PKRPPSAFF+F  E R   
Sbjct:    54 AKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKI 113

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA 397
             K+E+P + ++    K  GE W   S+ +K PYE KAAK K +YEK I AY  K  S A
Sbjct:   114 KSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEA 170

 Score = 116 (40.8 bits), Expect = 9.3e-05, P = 9.3e-05
 Identities = 25/76 (32%), Positives = 43/76 (56%), Frame = +2

Query:   149 KKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEA 325
             K DPNKP+   S++  F++  R+  K ++P      +   K   E+WK++S+ EK+ +E 
Sbjct:     3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62

Query:   326 KAAKRKAEYEKLIKAY 373
              A   KA Y++ +K Y
Sbjct:    63 MAKSDKARYDREMKNY 78


 >gi|3342573|gb|AAC27651.1|  (AF078818) high mobility group protein [Spalax
            ehrenbergi]
            Length = 215

Frame  2 hits (HSPs):   ___________________________________________       
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 225 (79.2 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 55/131 (41%), Positives = 75/131 (57%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K  K +   + +    PK E K K KDPN PKRPPSAFF+F  E+R   
Sbjct:    54 AKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKI 113

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADD 403
             K E+P + ++  V K  GE W + ++ +K PYE KAAK K +YEK I AY  K    A  
Sbjct:   114 KGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAK 172

Query:   404 D---ESDKSKSE 430
             +   +++KSK +
Sbjct:   173 EGVVKAEKSKKK 184

 Score = 114 (40.1 bits), Expect = 0.00021, P = 0.00021
 Identities = 25/76 (32%), Positives = 41/76 (53%), Frame = +2

Query:   149 KKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEA 325
             K DP KP+   S++  F++  R+  K ++P      S   +   E+WK++S+ EK  +E 
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSERCSERWKTMSAKEKGKFED 62

Query:   326 KAAKRKAEYEKLIKAY 373
              A   KA YE+ +K Y
Sbjct:    63 MAKADKARYEREMKTY 78


 >gi|104693|pir||JC1129  nonhistone chromosomal protein HMG-2 - chicken
            >gi|211929|gb|AAA48819.1| (M80574) high-mobility group-2 protein
            [Gallus gallus]
            Length = 207

Frame  2 hits (HSPs):   _________________________________________         
Annotated Domains:       ___________________ ___________________          
                        __________________________________________________
Database sequence:     |           |           |           |            | | 207
                       0          50         100         150          200
__________________

Annotated Domains:
   Entrez               domain: HMG box homology #label HMG1     6..83
   Entrez               domain: HMG box homology #label HMG2     92..166
   PROSITE              HMG1_2: HMG1/2 signature.                41..52
__________________


  Plus Strand HSPs:

 Score = 225 (79.2 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 55/129 (42%), Positives = 71/129 (55%), Frame = +2

Query:    38 ARPSKESLKPVDDRKVGKRKASGKPEKSR---------APKKEKKAKK-DPNKPKRPPSA 187
             +R   E  K +  ++ GK +   K +K+R          PK EKK KK DPN PKRPPSA
Sbjct:    42 SRKCSERWKTMSSKEKGKFEEMAKGDKARYDREMKNYVPPKGEKKGKKKDPNAPKRPPSA 101

Query:   188 FFVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIK 367
             FF+F  E R   K ++P + ++    K  GE W   S+ +K PYE KAAK K +YEK I 
Sbjct:   102 FFLFCSEHRPKIKNDHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIA 160

Query:   368 AYEKKQASSA 397
             AY  K  S A
Sbjct:   161 AYRAKSKSDA 170

 Score = 108 (38.0 bits), Expect = 0.0013, P = 0.0013
 Identities = 24/76 (31%), Positives = 41/76 (53%), Frame = +2

Query:   149 KKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEA 325
             K DPNKP+   S++  F++   +  K ++P      +   +   E+WK++SS EK  +E 
Sbjct:     3 KGDPNKPRGKMSSYAYFVQTCPREHKKKHPDSSVNFAEFSRKCSERWKTMSSKEKGKFEE 62

Query:   326 KAAKRKAEYEKLIKAY 373
              A   KA Y++ +K Y
Sbjct:    63 MAKGDKARYDREMKNY 78


 >gi|609551|gb|AAA58771.1|  (L32859) HMG-1 [Oncorhynchus mykiss]
            Length = 204

Frame  2 hits (HSPs):   ________________________________________________  
                        __________________________________________________
Database sequence:     |            |           |           |           | | 204
                       0           50         100         150         200

  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 51/112 (45%), Positives = 67/112 (59%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K+ K +   +      PK EKK + KDPN PKRP SAFF+F  +FR   
Sbjct:    53 AKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQV 112

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK 382
             K E P + ++  V K  GEKW +L++ +K PYE KA+K K +YEK I AY  K
Sbjct:   113 KGETPGL-SIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYEKDITAYRNK 164

 Score = 220 (77.4 bits), Expect = 3.6e-17, P = 3.6e-17
 Identities = 58/141 (41%), Positives = 76/141 (53%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K+ K +   +      PK EKK + KDPN PKRP SAFF+F  +FR   
Sbjct:    53 AKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQV 112

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK------- 382
             K E P + ++  V K  GEKW +L++ +K PYE KA+K K +YEK I AY  K       
Sbjct:   113 KGETPGL-SIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYEKDITAYRNKGKVPVSM 171

Query:   383 QASSA------DDDESDKSKSE 430
              A +A      DDD+ D    E
Sbjct:   172 PAKAAAPAKDDDDDDDDDDDDE 193

 Score = 113 (39.8 bits), Expect = 0.00024, P = 0.00024
 Identities = 24/75 (32%), Positives = 41/75 (54%), Frame = +2

Query:   152 KDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEAK 328
             KDP KP+   S++  F++  R+  K ++P      S   K   E+WK++S+ EK  +E  
Sbjct:     3 KDPRKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62

Query:   329 AAKRKAEYEKLIKAY 373
             A   K  YE+ +++Y
Sbjct:    63 AKLDKVRYEREMRSY 77


 >gi|1085210|pir||S48708  high-mobility-group-1 protein - trout
            Length = 204

Frame  2 hits (HSPs):   ________________________________________________  
Annotated Domains:      ______________________________________            
                        __________________________________________________
Database sequence:     |            |           |           |           | | 204
                       0           50         100         150         200
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          1..77
   DOMO                 DM00056: HMGBOX                          79..156
   PROSITE              HMG1_2: HMG1/2 signature.                40..51
__________________


  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 51/112 (45%), Positives = 67/112 (59%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K+ K +   +      PK EKK + KDPN PKRP SAFF+F  +FR   
Sbjct:    53 AKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQV 112

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK 382
             K E P + ++  V K  GEKW +L++ +K PYE KA+K K +YEK I AY  K
Sbjct:   113 KGETPGL-SIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYEKDITAYRNK 164

 Score = 220 (77.4 bits), Expect = 3.6e-17, P = 3.6e-17
 Identities = 58/141 (41%), Positives = 76/141 (53%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K+ K +   +      PK EKK + KDPN PKRP SAFF+F  +FR   
Sbjct:    53 AKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQV 112

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK------- 382
             K E P + ++  V K  GEKW +L++ +K PYE KA+K K +YEK I AY  K       
Sbjct:   113 KGETPGL-SIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYEKDITAYRNKGKVPVSM 171

Query:   383 QASSA------DDDESDKSKSE 430
              A +A      DDD+ D    E
Sbjct:   172 PAKAAAPAKDDDDDDDDDDDDE 193

 Score = 109 (38.4 bits), Expect = 0.00092, P = 0.00092
 Identities = 24/75 (32%), Positives = 40/75 (53%), Frame = +2

Query:   152 KDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEAK 328
             KDP KP+   S++  F++  R   K ++P      S   K   E+WK++S+ EK  +E  
Sbjct:     3 KDPRKPRGKMSSYAYFVQTCRIEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62

Query:   329 AAKRKAEYEKLIKAY 373
             A   K  YE+ +++Y
Sbjct:    63 AKLDKVRYEREMRSY 77


 >gi|85591|pir||A24019  nonhistone chromosomal protein HMG-T - trout (fragment)
            Length = 172

Frame  2 hits (HSPs):        __________________________________________   
Annotated Domains:      _______________ _______________________           
                        __________________________________________________
Database sequence:     |              |             |              |      | 172
                       0             50           100            150
__________________

Annotated Domains:
   Entrez               domain: HMG box homology (fragment) #lab 1..50
   Entrez               domain: HMG box homology #label HMG2     59..133
   PROSITE              HMG1_2: HMG1/2 signature.                8..19
__________________


  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 51/112 (45%), Positives = 67/112 (59%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K+ K +   +      PK EKK + KDPN PKRP SAFF+F  +FR   
Sbjct:    21 AKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQV 80

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK 382
             K E P + ++  V K  GEKW +L++ +K PYE KA+K K +YEK I AY  K
Sbjct:    81 KGETPGL-SIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYEKDITAYRNK 132

 Score = 220 (77.4 bits), Expect = 3.6e-17, P = 3.6e-17
 Identities = 58/141 (41%), Positives = 76/141 (53%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K+ K +   +      PK EKK + KDPN PKRP SAFF+F  +FR   
Sbjct:    21 AKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQV 80

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK------- 382
             K E P + ++  V K  GEKW +L++ +K PYE KA+K K +YEK I AY  K       
Sbjct:    81 KGETPGL-SIGDVAKKLGEKWNNLTAEDKVPYEKKASKLKEKYEKDITAYRNKGKVPVSM 139

Query:   383 QASSA------DDDESDKSKSE 430
              A +A      DDD+ D    E
Sbjct:   140 PAKAAAPAKDDDDDDDDDDDDE 161


 >gi|6680231  ref|NP_032279.1| high mobility group box 3; high mobilty group
            protein 2A; high-mobility group protein 4 [Mus musculus]
            >gi|2738989|gb|AAC16925.1| (AF022465) high mobility group protein
            homolog HMG4 [Mus musculus]
            Length = 200

Frame  2 hits (HSPs):   _________________________________________         
                        __________________________________________________
Database sequence:     |            |           |            |            | 200
                       0           50         100          150

  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 50/112 (44%), Positives = 62/112 (55%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFK 226
             SKE  K  D+     +    +  K   P K  K KKDPN PKRPPS FF+F  EFR   K
Sbjct:    54 SKEKSK-FDEMAKADKVRYDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIK 112

Query:   227 AENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK 382
             + NP + ++  V K  GE W +LS  EK PY  KAAK K +YEK +  Y+ K
Sbjct:   113 STNPGI-SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSK 163

 Score = 127 (44.7 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 28/77 (36%), Positives = 43/77 (55%), Frame = +2

Query:   146 AKKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYE 322
             AK DP KPK   SA+  F++  R+  K +NP V    +   K   E+WK++SS EK+ ++
Sbjct:     2 AKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKFD 61

Query:   323 AKAAKRKAEYEKLIKAY 373
               A   K  Y++ +K Y
Sbjct:    62 EMAKADKVRYDREMKDY 78


 >gi|123367|sp|P10103|HMG1_BOVIN  HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1)
            >gi|89686|pir||S01947 nonhistone chromosomal protein HMG-1 - bovine
            >gi|417|emb|CAA31284.1| (X12796) HMG1 protein (AA 1 - 215) [Bos
            taurus]
            Length = 215

Frame  2 hits (HSPs):   ___________________________________________       
Annotated Domains:      _________________________________________  _______
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200
__________________

Annotated Domains:
   BLOCKS               BL00353A: HMG1/2 proteins.               1..49
   BLOCKS               BL00353B: HMG1/2 proteins.               77..126
   BLOCKS               BL00353C: HMG1/2 proteins.               127..173
   DOMO                 DM00056: HMGBOX                          1..77
   DOMO                 DM00056: HMGBOX                          79..156
   Entrez               dna-binding site: HMG BOX 1.             9..79
   Entrez               dna-binding site: HMG BOX 2.             95..163
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           186..215
   PFAM                 HMG_box: HMG (high mobility group) box   5..78
   PFAM                 HMG_box: HMG (high mobility group) box   94..162
   PRINTS               1: High mobility group prote 39..61
   PRINTS               2: High mobility group prote 62..82
   PRINTS               3: High mobility group prote 109..127
   PRINTS               4: High mobility group prote 127..146
   PRINTS               5: High mobility group prote 146..166
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      7..76
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      92..164
   PROSITE              HMG1_2: HMG1/2 signature.                41..52
__________________


  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 55/131 (41%), Positives = 75/131 (57%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K  K +   + +    PK E K K KDPN PKRPPSAFF+F  E+R   
Sbjct:    54 AKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKI 113

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK---QASS 394
             K E+P + ++  V K  GE W + ++ +K PYE KAAK K +YEK I AY  K    A+ 
Sbjct:   114 KGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAK 172

Query:   395 ADDDESDKSKSE 430
                 +++KSK +
Sbjct:   173 KGVVKAEKSKKK 184

 Score = 118 (41.5 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 26/76 (34%), Positives = 41/76 (53%), Frame = +2

Query:   149 KKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEA 325
             K DP KP+   S++  F++  R+  K ++P      S   K   E+WK++S+ EK  +E 
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   326 KAAKRKAEYEKLIKAY 373
              A   KA YE+ +K Y
Sbjct:    63 MAKADKARYEREMKTY 78


 >gi|4504425  ref|NP_002119.1| high-mobility group (nonhistone chromosomal)
            protein 1 [Homo sapiens] >gi|11434210 ref|XP_007135.1|
            high-mobility group (nonhistone chromosomal) protein 1 [Homo
            sapiens] >gi|123369|sp|P09429|HMG1_HUMAN HIGH MOBILITY GROUP
            PROTEIN HMG1 (HMG-1) >gi|88270|pir||S02826 nonhistone chromosomal
            protein HMG-1 - human >gi|32327|emb|CAA31110.1| (X12597) HMG-1
            protein (AA 1-215) [Homo sapiens] >gi|1435197|gb|AAB08987.1|
            (U51677) non-histone chromatin protein HMG1 [Homo sapiens]
            Length = 215

Frame  2 hits (HSPs):   ___________________________________________       
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 55/131 (41%), Positives = 75/131 (57%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K  K +   + +    PK E K K KDPN PKRPPSAFF+F  E+R   
Sbjct:    54 AKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKI 113

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK---QASS 394
             K E+P + ++  V K  GE W + ++ +K PYE KAAK K +YEK I AY  K    A+ 
Sbjct:   114 KGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAK 172

Query:   395 ADDDESDKSKSE 430
                 +++KSK +
Sbjct:   173 KGVVKAEKSKKK 184

 Score = 118 (41.5 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 26/76 (34%), Positives = 41/76 (53%), Frame = +2

Query:   149 KKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEA 325
             K DP KP+   S++  F++  R+  K ++P      S   K   E+WK++S+ EK  +E 
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   326 KAAKRKAEYEKLIKAY 373
              A   KA YE+ +K Y
Sbjct:    63 MAKADKARYEREMKTY 78


 >gi|6754208  ref|NP_034569.1| high mobility group protein 1 [Mus musculus]
            >gi|6981026 ref|NP_037095.1| high mobility group 1 [Rattus
            norvegicus] >gi|1708258|sp|P07155|HMG1_MOUSE HIGH MOBILITY GROUP
            PROTEIN HMG1 (HMG-1) (AMPHOTERIN) (HEPARIN-BINDING PROTEIN P30)
            >gi|70784|pir||NSRTH1 nonhistone chromosomal protein HMG-1 - rat
            >gi|2119029|pir||I48688 non-histone chromosomal high-mobility group
            1 protein - mouse >gi|53382|emb|CAA78042.1| (Z11997) non-histone
            chromosomal high-mobility  group 1 protein [Mus musculus]
            >gi|56365|emb|CAA68526.1| (Y00463) HMG1 (AA 1-213) [Rattus
            norvegicus] >gi|202885|gb|AAA40729.1| (M64986) Amphoterin [Rattus
            norvegicus] >gi|208488|gb|AAA73006.1| (M63852) high mobility group
            1 protein [synthetic construct] >gi|437102|gb|AAA20508.1| (U00431)
            HMG-1 [Mus musculus] >gi|9082303|gb|AAF82799.1|AF275734_1
            (AF275734) amphoterin [Rattus norvegicus]
            Length = 215

Frame  2 hits (HSPs):   ___________________________________________       
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 55/131 (41%), Positives = 75/131 (57%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K  K +   + +    PK E K K KDPN PKRPPSAFF+F  E+R   
Sbjct:    54 AKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKI 113

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK---QASS 394
             K E+P + ++  V K  GE W + ++ +K PYE KAAK K +YEK I AY  K    A+ 
Sbjct:   114 KGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAK 172

Query:   395 ADDDESDKSKSE 430
                 +++KSK +
Sbjct:   173 KGVVKAEKSKKK 184

 Score = 118 (41.5 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 26/76 (34%), Positives = 41/76 (53%), Frame = +2

Query:   149 KKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEA 325
             K DP KP+   S++  F++  R+  K ++P      S   K   E+WK++S+ EK  +E 
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   326 KAAKRKAEYEKLIKAY 373
              A   KA YE+ +K Y
Sbjct:    63 MAKADKARYEREMKTY 78


 >gi|620098|emb|CAA56631.1|  (X80457) high mobility group protein [Mus musculus]
            Length = 215

Frame  2 hits (HSPs):   ___________________________________________       
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 55/131 (41%), Positives = 75/131 (57%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K  K +   + +    PK E K K KDPN PKRPPSAFF+F  E+R   
Sbjct:    54 AKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKI 113

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK---QASS 394
             K E+P + ++  V K  GE W + ++ +K PYE KAAK K +YEK I AY  K    A+ 
Sbjct:   114 KGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAK 172

Query:   395 ADDDESDKSKSE 430
                 +++KSK +
Sbjct:   173 KGVVKAEKSKKK 184

 Score = 118 (41.5 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 26/76 (34%), Positives = 41/76 (53%), Frame = +2

Query:   149 KKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEA 325
             K DP KP+   S++  F++  R+  K ++P      S   K   E+WK++S+ EK  +E 
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   326 KAAKRKAEYEKLIKAY 373
              A   KA YE+ +K Y
Sbjct:    63 MAKADKARYEREMKTY 78


 >gi|3342575|gb|AAC27652.1|  (AF078819) high mobility group protein [Spalax
            ehrenbergi]
            Length = 215

Frame  2 hits (HSPs):   ___________________________________________       
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 55/131 (41%), Positives = 75/131 (57%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K  K +   + +    PK E K K KDPN PKRPPSAFF+F  E+R   
Sbjct:    54 AKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKI 113

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK---QASS 394
             K E+P + ++  V K  GE W + ++ +K PYE KAAK K +YEK I AY  K    A+ 
Sbjct:   114 KGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAK 172

Query:   395 ADDDESDKSKSE 430
                 +++KSK +
Sbjct:   173 KGVVKAEKSKKK 184

 Score = 117 (41.2 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 26/76 (34%), Positives = 41/76 (53%), Frame = +2

Query:   149 KKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEA 325
             K DP KP+   S++  F++  R+  K ++P      S   K   E+WK++S+ EK  +E 
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREGHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   326 KAAKRKAEYEKLIKAY 373
              A   KA YE+ +K Y
Sbjct:    63 MAKADKARYEREMKTY 78


 >gi|123368|sp|P07156|HMG1_CRIGR  HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1)
            >gi|49483|emb|CAA68441.1| (Y00365) high mobility group protein
            [Cricetulus griseus]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________        
Annotated Domains:      ____________    ____________________     _________
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   Entrez               dna-binding site: HMG BOX 1.             1..44
   Entrez               dna-binding site: HMG BOX 2.             60..128
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           151..180
   PFAM                 HMG_box: HMG (high mobility group) box   2..44
   PFAM                 HMG_box: HMG (high mobility group) box   60..128
   PROSITE              HMG1_2: HMG1/2 signature.                6..17
__________________


  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 55/131 (41%), Positives = 75/131 (57%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K  K +   + +    PK E K K KDPN PKRPPSAFF+F  E+R   
Sbjct:    19 AKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKI 78

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK---QASS 394
             K E+P + ++  V K  GE W + ++ +K PYE KAAK K +YEK I AY  K    A+ 
Sbjct:    79 KGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAK 137

Query:   395 ADDDESDKSKSE 430
                 +++KSK +
Sbjct:   138 KGVVKAEKSKKK 149

 Score = 79 (27.8 bits), Expect = 4.5, P = 0.99
 Identities = 16/40 (40%), Positives = 23/40 (57%), Frame = +2

Query:   254 SVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAY 373
             S   K   E+WK++S+ EK  +E  A   KA YE+ +K Y
Sbjct:     4 SEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 43


 >gi|90208|pir||A27853  nonhistone chromosomal protein HMG-1 - Chinese hamster
            (fragment)
            Length = 170

Frame  2 hits (HSPs):   _________________________________________         
Annotated Domains:      ___________  _______________________              
                        __________________________________________________
Database sequence:     |              |              |             |      | 170
                       0             50            100           150
__________________

Annotated Domains:
   Entrez               domain: HMG box homology (fragment) #lab 1..38
   Entrez               domain: HMG box homology #label HMG2     47..121
__________________


  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 55/131 (41%), Positives = 75/131 (57%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K  K +   + +    PK E K K KDPN PKRPPSAFF+F  E+R   
Sbjct:     9 AKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKI 68

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK---QASS 394
             K E+P + ++  V K  GE W + ++ +K PYE KAAK K +YEK I AY  K    A+ 
Sbjct:    69 KGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAK 127

Query:   395 ADDDESDKSKSE 430
                 +++KSK +
Sbjct:   128 KGVVKAEKSKKK 139

 Score = 77 (27.1 bits), Expect = 6.9, P = 1.0
 Identities = 14/32 (43%), Positives = 21/32 (65%), Frame = +2

Query:   278 EKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAY 373
             E+WK++S+ EK  +E  A   KA YE+ +K Y
Sbjct:     2 ERWKTMSAKEKGKFEDMAKADKARYEREMKTY 33


 >gi|422864|pir||S30221  nonhistone chromosomal protein HMG-2B - human (fragment)
            >gi|32335|emb|CAA78938.1| (Z17240) HMG2B [Homo sapiens]
            Length = 186

Frame  2 hits (HSPs):           ________________________________          
Annotated Domains:          ____          _____________________           
                        __________________________________________________
Database sequence:     |             |            |             |         | 186
                       0            50          100           150
__________________

Annotated Domains:
   Entrez               domain: HMG box homology #label HMG1     69..143
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  138..145
   PROSITE              HMG1_2: HMG1/2 signature.                18..29
__________________


  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 53/117 (45%), Positives = 67/117 (57%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKK-DPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K  K +   + +    PK +KK KK DPN PKRPPSAFF+F  E R   
Sbjct:    31 AKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKI 90

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA 397
             K+E+P + ++    K  GE W   S+ +K PYE KAAK K +YEK I AY  K  S A
Sbjct:    91 KSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYGAKGKSEA 147


 >gi|123371|sp|P12682|HMG1_PIG  HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1)
            >gi|89253|pir||A28897 nonhistone chromosomal protein HMG-1 - pig
            >gi|164490|gb|AAA31050.1| (M21683) non-histone protein HMG1 [Sus
            scrofa]
            Length = 215

Frame  2 hits (HSPs):   ___________________________________________       
Annotated Domains:      ___________________  __________________    _______
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200
__________________

Annotated Domains:
   Entrez               dna-binding site: HMG BOX 1.             9..79
   Entrez               dna-binding site: HMG BOX 2.             95..163
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           186..215
   PFAM                 HMG_box: HMG (high mobility group) box   5..78
   PFAM                 HMG_box: HMG (high mobility group) box   94..162
   PRINTS               1: High mobility group prote 39..61
   PRINTS               2: High mobility group prote 62..82
   PRINTS               3: High mobility group prote 109..127
   PRINTS               4: High mobility group prote 127..146
   PRINTS               5: High mobility group prote 146..166
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      7..76
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      92..164
   PROSITE              HMG1_2: HMG1/2 signature.                41..52
__________________


  Plus Strand HSPs:

 Score = 222 (78.1 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 55/131 (41%), Positives = 75/131 (57%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K  K +   + +    PK E K K KDPN PKRPPSAFF+F  E+R   
Sbjct:    54 AKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKI 113

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK---QASS 394
             K E+P + ++  V K  GE W + ++ +K PYE KAAK K +YEK I AY  K    A+ 
Sbjct:   114 KGEHPGL-SIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYRAKGKPDAAK 172

Query:   395 ADDDESDKSKSE 430
                 +++KSK +
Sbjct:   173 KGVVKAEKSKKK 184

 Score = 118 (41.5 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 26/76 (34%), Positives = 41/76 (53%), Frame = +2

Query:   149 KKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEA 325
             K DP KP+   S++  F++  R+  K ++P      S   K   E+WK++S+ EK  +E 
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   326 KAAKRKAEYEKLIKAY 373
              A   KA YE+ +K Y
Sbjct:    63 MAKADKARYEREMKTY 78


 >gi|123375|sp|P17741|HMG2_PIG  HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2)
            >gi|108366|pir||A34719 nonhistone chromosomal protein HMG-2 - pig
            >gi|164492|gb|AAA31051.1| (J02895) non-histone protein HMG2
            precursor [Sus scrofa]
            Length = 210

Frame  2 hits (HSPs):   _________________________________________         
Annotated Domains:      ____________________ _____________________________
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 210
                       0          50         100         150         200
__________________

Annotated Domains:
   Entrez               dna-binding site: HMG BOX 1.             9..79
   Entrez               dna-binding site: HMG BOX 2.             95..163
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           186..210
   PFAM                 HMG_box: HMG (high mobility group) box   5..78
   PFAM                 HMG_box: HMG (high mobility group) box   94..162
   PRINTS               1: High mobility group prote 39..61
   PRINTS               2: High mobility group prote 62..82
   PRINTS               3: High mobility group prote 109..127
   PRINTS               4: High mobility group prote 127..146
   PRINTS               5: High mobility group prote 146..166
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      6..76
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      92..164
   PRODOM               PD056516: HMG2_PIG                       166..185
   PROSITE              HMG1_2: HMG1/2 signature.                41..52
__________________


  Plus Strand HSPs:

 Score = 221 (77.8 bits), Expect = 2.8e-17, P = 2.8e-17
 Identities = 52/117 (44%), Positives = 66/117 (56%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAKK-DPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K  K +   + +    PK +KK KK DPN PKRPPSAFF+F  E R   
Sbjct:    54 AKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKI 113

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA 397
             K+E+P + ++    K  GE W   S+ +K PYE KAAK K +YEK I AY  K    A
Sbjct:   114 KSEHPGL-SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKGEA 170

 Score = 116 (40.8 bits), Expect = 9.5e-05, P = 9.5e-05
 Identities = 25/76 (32%), Positives = 43/76 (56%), Frame = +2

Query:   149 KKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEA 325
             K DPNKP+   S++  F++  R+  K ++P      +   K   E+WK++S+ EK+ +E 
Sbjct:     3 KGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFED 62

Query:   326 KAAKRKAEYEKLIKAY 373
              A   KA Y++ +K Y
Sbjct:    63 MAKSDKARYDREMKNY 78


 >gi|123382|sp|P07746|HMGT_ONCMY  HIGH MOBILITY GROUP-T PROTEIN (HMG-T) (HMG-T1)
            (HMG-1) >gi|7439869|pir||T01071 high mobility group protein T -
            rainbow trout >gi|64328|emb|CAA26500.1| (X02666) HMG-T (aa 1-204)
            [Oncorhynchus mykiss]
            Length = 204

Frame  2 hits (HSPs):   ________________________________________________  
Annotated Domains:      ___________________________________________ ______
                        __________________________________________________
Database sequence:     |            |           |           |           | | 204
                       0           50         100         150         200
__________________

Annotated Domains:
   BLOCKS               BL00353A: HMG1/2 proteins.               1..49
   BLOCKS               BL00353B: HMG1/2 proteins.               77..126
   BLOCKS               BL00353C: HMG1/2 proteins.               127..173
   DOMO                 DM00056: HMGBOX                          1..77
   DOMO                 DM00056: HMGBOX                          79..156
   Entrez               dna-binding site: HMG BOX 1.             8..78
   Entrez               dna-binding site: HMG BOX 2.             94..162
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           181..204
   PFAM                 HMG_box: HMG (high mobility group) box   5..78
   PFAM                 HMG_box: HMG (high mobility group) box   94..162
   PRINTS               1: High mobility group prote 39..61
   PRINTS               2: High mobility group prote 62..82
   PRINTS               3: High mobility group prote 109..127
   PRINTS               4: High mobility group prote 127..146
   PRINTS               5: High mobility group prote 146..166
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      7..76
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      92..164
   PROSITE              HMG1_2: HMG1/2 signature.                40..51
__________________


  Plus Strand HSPs:

 Score = 220 (77.4 bits), Expect = 3.6e-17, P = 3.6e-17
 Identities = 50/112 (44%), Positives = 67/112 (59%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K+ K +   +      PK EKK + KDPN PKRP SAFF+F  +FR   
Sbjct:    53 AKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQV 112

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK 382
             K E P + ++  V K  GEKW +L++ +K PYE KA++ K +YEK I AY  K
Sbjct:   113 KGETPGL-SIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNK 164

 Score = 217 (76.4 bits), Expect = 7.5e-17, P = 7.5e-17
 Identities = 57/141 (40%), Positives = 76/141 (53%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K+ K +   +      PK EKK + KDPN PKRP SAFF+F  +FR   
Sbjct:    53 AKEKGKFEDLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQV 112

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK------- 382
             K E P + ++  V K  GEKW +L++ +K PYE KA++ K +YEK I AY  K       
Sbjct:   113 KGETPGL-SIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNKGKVPVSM 171

Query:   383 QASSA------DDDESDKSKSE 430
              A +A      DDD+ D    E
Sbjct:   172 PAKAAAPAKDDDDDDDDDDDDE 193

 Score = 112 (39.4 bits), Expect = 0.00035, P = 0.00035
 Identities = 24/75 (32%), Positives = 41/75 (54%), Frame = +2

Query:   152 KDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEAK 328
             KDP KP+   S++  F++  R+  K ++P      S   K   E+WK++S+ EK  +E  
Sbjct:     3 KDPRKPRGKMSSYAYFVQTRREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDL 62

Query:   329 AAKRKAEYEKLIKAY 373
             A   K  YE+ +++Y
Sbjct:    63 AKLDKVRYEREMRSY 77


 >gi|600761|gb|AAA57042.1|  (L38477) high mobility group 1 protein [Mus musculus]
            Length = 215

Frame  2 hits (HSPs):   _______________________________________           
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 220 (77.4 bits), Expect = 3.6e-17, P = 3.6e-17
 Identities = 51/112 (45%), Positives = 66/112 (58%), Frame = +2

Query:    47 SKESLKPVDDRKVGKRKASGKPEKSRAPKKEKKAK-KDPNKPKRPPSAFFVFLEEFRKTF 223
             +KE  K  D  K  K +   + +    PK E K K KDPN PKRPPSAFF+F  E+R   
Sbjct:    54 AKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKI 113

Query:   224 KAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAYEKK 382
             K E+P + ++  V K  GE W + ++ +K PYE KAAK K +YEK I AY  K
Sbjct:   114 KGEHPGL-SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAK 165

 Score = 118 (41.5 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 26/76 (34%), Positives = 41/76 (53%), Frame = +2

Query:   149 KKDPNKPKRPPSAFFVFLEEFRKTFKAENPLVKA-VSVVGKAGGEKWKSLSSAEKAPYEA 325
             K DP KP+   S++  F++  R+  K ++P      S   K   E+WK++S+ EK  +E 
Sbjct:     3 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 62

Query:   326 KAAKRKAEYEKLIKAY 373
              A   KA YE+ +K Y
Sbjct:    63 MAKADKARYEREMKTY 78


WARNING:  HSPs involving 873 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.96

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.339   0.147   0.434  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.326   0.140   0.430  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.372   0.167   0.645  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.354   0.159   0.555  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.344   0.150   0.476  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.340   0.144   0.492  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      202       173       10.  75 3  12 22  0.11    34
                                                    31  0.11    37
   +2      0      203       174       10.  75 3  12 22  0.11    34
                                                    31  0.11    37
   +1      0      203       174       10.  75 3  12 22  0.11    34
                                                    31  0.11    37
   -1      0      203       175       10.  75 3  12 22  0.11    34
                                                    31  0.11    37
   -2      0      203       174       10.  75 3  12 22  0.11    34
                                                    31  0.11    37
   -3      0      202       173       10.  75 3  12 22  0.11    34
                                                    31  0.11    37


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  923
  No. of states in DFA:  592 (58 KB)
  Total size of DFA:  183 KB (192 KB)
  Time to generate neighborhood:  0.00u 0.02s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  185.47u 1.04s 186.51t  Elapsed: 00:00:44
  Total cpu time:  185.52u 1.11s 186.63t  Elapsed: 00:00:44
  Start:  Thu Jan 17 14:21:05 2002   End:  Thu Jan 17 14:21:49 2002

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000