BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract

processing output:
cycle 1
cycle 2
cycle 3
cycle 4
Repeat sequence:
   SW  perc perc perc  query                position in query    matching repeat         position in  repeat
score  div. del. ins.  sequence             begin  end (left)    repeat   class/family   begin  end (left)  ID

   21   0.0  0.0  0.0  'E09H03_O15_16.ab1'     15   35  (482) +  AT_rich  Low_complexity     1   21    (0)      
  237  28.1  0.0  0.0  'E09H03_O15_16.ab1'    190  271  (246) +  (ATG)n   Simple_repeat      3   84    (0)      

Alignments:
21  0.00  0.00  0.00  'E09H03_O15_16.ab1'  15  35  (482)  AT_rich#Low_complexity  2  22  (278)  5

  'E09H03_O15_16.     15 ATTAATTTTTTAATTAATTTT 35     
                          vv vvvvv v   v vv vv
  AT_rich#Low_com      2 AAAATAAAATAAATAATATAA 22

Transitions / transversions = 0.00 (0 / 13)
Gap_init rate = 0.00 (0 / 21), avg. gap size = 0.00 (0 / 0)  


237  28.05  0.00  0.00  'E09H03_O15_16.ab1'  190  271  (246)  C  (CAT)n#Simple_repeat  (96)  84  3  5

  'E09H03_O15_16.    190 ATGATGAAGATGATGCCAGTGGAGAGGAGGACCACCAAGAGGACGAGGAT 239    
                                v       viii  iv  v  v  iv iv v  v  i  v   
C (CAT)n#Simple_r     84 ATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAT 35     

  'E09H03_O15_16.    240 GATGAGGAGGAAGAGGACGATGAAGATGATGA 271    
                              v  v  v  v  i     v        
C (CAT)n#Simple_r     34 GATGATGATGATGATGATGATGATGATGATGA 3      

Transitions / transversions = 0.53 (8 / 15)
Gap_init rate = 0.00 (0 / 82), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>'E09H03_O15_16.ab1'
TTACGGCCGGGGGGNNNNNNNNNNNNNNNNNNNNNGACTCCTCTCTTTGA
AATGTAAAGGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGC
TGAGTATGAAAAACTTATCAAAGCTTATGAGAAAAAGCAGGCAAGCTCTG
CAGATGATGATGAATCAGACAAGTCCAAATCTGAAGTGANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCTGAGATTGATGTCCAAAACCTTGGTTAT
GATATTTTGTTTATGAGGGAGGCTATTATATATTCTGACTGTGCATACTA
GGCTACTTTTTATGTTTGTGCTGGTAGAAAAGAATGTCTTCTTTGTTGGT
ACGATATATTGCCAACTACTTGAGCTTCCCTCACTTAGCTATCGTACCTG
AATCACTTTTTGTGCATTGTAGCCTTAAATGGGTTGCTTTAAGTAATATA
ATTTCTTTCTGACCAAA

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       517 bp
GC level:         38.68 %
bases masked:       103 bp ( 19.92 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       1           82 bp    15.86 %
Low complexity:       1           21 bp     4.06 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  'E09H03_O15_16.ab1'
        (517 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 4 Sequences     : less than 4 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1029 218 |======================================================
   6310  811 153 |======================================
   3980  658 145 |====================================
   2510  513 140 |===================================
   1580  373  96 |========================
   1000  277  66 |================
    631  211  43 |==========
    398  168  30 |=======
    251  138  20 |=====
    158  118  12 |===
    100  106  13 |===
   63.1   93   8 |==
   39.8   85   6 |=
   25.1   79   4 |=
   15.8   75   2 |:
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 73  <<<<<<<<<<<<<<<<<
   10.0   73   8 |==
   6.31   65   2 |:
   3.98   63  13 |===
   2.51   50   4 |=
   1.58   46   0 |
   1.00   46   2 |:
   0.63   44   3 |:
   0.40   41   4 |=
   0.25   37   3 |:
   0.16   34   3 |:
   0.10   31   5 |=
  0.063   26   1 |:
  0.040   25   1 |:
  0.025   24   1 |:
  0.016   23   3 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|7446213|pir||T02252high mobility group protein HMG... +3   160  8.3e-11   1
gi|7446212|pir||T07377high mobility group protein - p... +3   153  4.6e-10   1
gi|1052956|gb|AAC50019.1|(U39747) high mobility group... +3   141  8.5e-09   1
gi|729736|sp|P40619|HMGL_PHANIHMG1/2-LIKE PROTEIN >gi... +3   138  1.8e-08   1
gi|11346368|pir||T51597high mobility group protein HM... +3   137  2.3e-08   1
gi|541968|pir||S40122high mobility group protein HMG-... +3   135  3.7e-08   1
gi|11346369|pir||T51598high mobility group protein HM... +3   134  4.7e-08   1
gi|123379|sp|P26585|HMGL_SOYBNHMG1/2-LIKE PROTEIN (SB... +3   131  9.8e-08   1
gi|11346370|pir||T51159HMG protein [imported] - Arabi... +3   127  2.6e-07   1
gi|8886929|gb|AAF80615.1|AC069251_8(AC069251) F2D10.1... +3   137  3.2e-07   1
gi|729737|sp|P40620|HMGL_VICFAHMG1/2-LIKE PROTEIN >gi... +3   118  2.3e-06   1
gi|11346367|pir||T51596high mobility group protein HM... +3   114  6.2e-06   1
gi|4914377|gb|AAD32913.1|AC007584_11(AC007584) putati... +3   114  6.2e-06   1
gi|7446228|pir||T03375high mobility group protein HMG... +3   113  7.9e-06   1
gi|7446231|pir||T09581probable high mobility group pr... +3   110  1.6e-05   1
gi|3885888|gb|AAC78104.1|(AF093632) high mobility gro... +3   110  1.6e-05   1
gi|123378|sp|P27347|MNBB_MAIZEDNA-BINDING PROTEIN MNB... +3   106  4.4e-05   1
gi|7446229|pir||T03640high mobility group protein MNB... +3   106  4.4e-05   1
gi|729738|sp|P40621|HMGL_WHEATHMG1/2-LIKE PROTEIN >gi... +3   103  9.1e-05   1
gi|950053|emb|CAA90679.1|(Z50799) HMG1/2-like protein... +3   101  0.00015   1
gi|729733|sp|Q05783|HMGD_DROMEHIGH MOBILITY GROUP PRO... +3    83  0.012     1
gi|729732|sp|P40627|HMGC_TETTHHIGH-MOBILITY-GROUP PRO... +3    82  0.015     1
gi|283626|pir||A43436high mobility group protein 1a -... +3    82  0.015     1
gi|729729|sp|P40622|HMGA_CHITEMOBILITY GROUP PROTEIN ... +3    82  0.022     1
gi|2119033|pir||I45910high-mobility-group protein - b... +3    79  0.031     1
gi|126226|sp|P11873|LG1_TETTHNONHISTONE CHROMOSOMAL P... +3    78  0.040     1
gi|729742|sp|P40625|HMG_TETPYHIGH-MOBILITY-GROUP PROT... +3    76  0.064     1
gi|576153|pdb|1HME|   High Mobility Group Protein Fra... +3    76  0.064     1
gi|999855|pdb|1NHM|   High Mobility Group Protein 1 (... +3    76  0.064     1
gi|1421453|pdb|1HSM|   High Mobility Group Protein 1 ... +3    76  0.064     1
gi|7446226|pir||T03372high mobility group protein HMG... +3    86  0.070     1
gi|104693|pir||JC1129nonhistone chromosomal protein H... +3    89  0.10      1
gi|123373|sp|P26584|HMG2_CHICKHIGH MOBILITY GROUP PRO... +3    88  0.14      1
gi|7446227|pir||T03374high mobility group protein HMG... +3    84  0.14      1
gi|11321591ref|NP_002120.1| high-mobility group (nonh... +3    87  0.20      1
gi|6680229ref|NP_032278.1| high mobility group protei... +3    87  0.20      1
gi|11527222|gb|AAG36939.1|AF267733_1(AF267733) high m... +3    87  0.20      1
gi|1421267|pdb|1HMA|   Hmg-D (Hmg-Box Domain, Residue... +3    71  0.23      1
gi|6730529|pdb|1QRV|AChain A, Crystal Structure Of Th... +3    71  0.23      1
gi|422864|pir||S30221nonhistone chromosomal protein H... +3    85  0.27      1
gi|2119031|pir||I48408high mobility group 2 protein -... +3    85  0.32      1
gi|109967|pir||S25487nonhistone chromosomal protein H... +3    85  0.34      1
gi|4468042|emb|CAB37859.1|(Z21703) HMG_box [Vicia faba]  +3    68  0.45      1
gi|2119032|pir||I51067gene HMG-T2 protein - rainbow t... +3    84  0.46      1
gi|123375|sp|P17741|HMG2_PIGHIGH MOBILITY GROUP PROTE... +3    83  0.55      1
gi|8393536ref|NP_058883.1| high mobility group protei... +3    83  0.55      1
gi|3342573|gb|AAC27651.1|(AF078818) high mobility gro... +3    81  0.80      1
gi|90208|pir||A27853nonhistone chromosomal protein HM... +3    79  0.81      1
gi|123368|sp|P07156|HMG1_CRIGRHIGH MOBILITY GROUP PRO... +3    79  0.85      1
gi|7488917|pir||T14286embryogenic callus protein 98b ... +3    84  0.91      1

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 23 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|7446213|pir||T02252  high mobility group protein HMG-1 - common tobacco
            >gi|2196548|gb|AAB61215.1| (AF002226) DNA-binding protein
            [Nicotiana tabacum]
            Length = 142

Frame  3 hits (HSPs):                               ____________________  
                        __________________________________________________
Database sequence:     |                 |                |               | 142
                       0                50              100

  Plus Strand HSPs:

 Score = 160 (56.3 bits), Expect = 8.3e-11, P = 8.3e-11
 Identities = 31/43 (72%), Positives = 37/43 (86%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSKSEV 188
             EKAPY+AKA KRKAEY+K + AY +KQA  A++DESDKSKSEV
Sbjct:    82 EKAPYQAKAEKRKAEYQKNMDAYNRKQAGDAEEDESDKSKSEV 124

 Score = 123 (43.3 bits), Expect = 6.9e-07, P = 6.9e-07
 Identities = 30/55 (54%), Positives = 36/55 (65%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSKSE------------- 185
             EKAPY+AKA KRKAEY+K + AY +KQA  A++DESDKSKSE             
Sbjct:    82 EKAPYQAKAEKRKAEYQKNMDAYNRKQAGDAEEDESDKSKSEVHDDDDEDDDGSE 136

 Score = 121 (42.6 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 30/56 (53%), Positives = 36/56 (64%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSKSE-------------- 185
             EKAPY+AKA KRKAEY+K + AY +KQA  A++DESDKSKSE              
Sbjct:    82 EKAPYQAKAEKRKAEYQKNMDAYNRKQAGDAEEDESDKSKSEVHDDDDEDDDGSEE 137


 >gi|7446212|pir||T07377  high mobility group protein - potato
            >gi|2894109|emb|CAA05365.1| (AJ002391) high mobility group protein
            [Solanum tuberosum]
            Length = 141

Frame  3 hits (HSPs):                               ________________      
                        __________________________________________________
Database sequence:     |                 |                 |              | 141
                       0                50               100

  Plus Strand HSPs:

 Score = 153 (53.9 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 32/45 (71%), Positives = 38/45 (84%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAYEKKQASS-ADDDESDKSKSEV 188
             +EKAPY+AKA KRKAEY+K + AY KK A+  ADD+ESDKSKSEV
Sbjct:    81 EEKAPYQAKAEKRKAEYQKNMDAYNKKLAAGDADDEESDKSKSEV 125


 >gi|1052956|gb|AAC50019.1|  (U39747) high mobility group protein 2 HMG2 [Ipomoea
            nil]
            Length = 146

Frame  3 hits (HSPs):                              ________________       
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100

  Plus Strand HSPs:

 Score = 141 (49.6 bits), Expect = 8.5e-09, P = 8.5e-09
 Identities = 29/44 (65%), Positives = 37/44 (84%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKKQAS-SADDDESDKSKSEV 188
             EKAP+ AKA KRK EYEK ++AY +KQA  +AD++ESDKS+SEV
Sbjct:    82 EKAPFIAKAEKRKQEYEKSMQAYNRKQAGEAADEEESDKSRSEV 125


 >gi|729736|sp|P40619|HMGL_PHANI  HMG1/2-LIKE PROTEIN >gi|1085860|pir||S40302
            high mobility group protein HMG-1 - Pharbitis nil
            Length = 144

Frame  3 hits (HSPs):                               ________________      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                 |                |               | 144
                       0                50              100
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          27..99
   Entrez               dna-binding site: HMG BOX.               36..105
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           114..144
   PFAM                 HMG_box: HMG (high mobility group) box   36..105
   PRODOM               PD019458: HMGL(1) Q40094(1) O49948(1)    1..32
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      34..106
   PRODOM               PD056523: HMGL_PHANI                     108..131
__________________


  Plus Strand HSPs:

 Score = 138 (48.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 28/44 (63%), Positives = 38/44 (86%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKKQAS-SADDDESDKSKSEV 188
             EKAP+ +KA KRK EYEK ++AY KKQA+ +A+++ESDKS+SEV
Sbjct:    82 EKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEESDKSRSEV 125


 >gi|11346368|pir||T51597  high mobility group protein HMG-beta1 [validated] -
            Arabidopsis thaliana >gi|2832359|emb|CAA74401.1| (Y14072) HMG
            protein [Arabidopsis thaliana]
            Length = 144

Frame  3 hits (HSPs):                               ________________      
                        __________________________________________________
Database sequence:     |                 |                |               | 144
                       0                50              100

  Plus Strand HSPs:

 Score = 137 (48.2 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 30/44 (68%), Positives = 33/44 (75%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKK-QASSADDDESDKSKSEV 188
             EKAPY AKA KRK EYEK IKAY KK +    +D+ESDKS SEV
Sbjct:    84 EKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDKSVSEV 127


 >gi|541968|pir||S40122  high mobility group protein HMG-1 - garden pea
            >gi|436424|emb|CAA54168.1| (X76774) HMG 1 protein [Pisum sativum]
            Length = 154

Frame  3 hits (HSPs):                                ________________     
Annotated Domains:                 ___________________________            
                        __________________________________________________
Database sequence:     |               |                |               | | 154
                       0              50              100             150
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          36..108
   Entrez               domain: HMG box homology #label HMG1     42..118
__________________


  Plus Strand HSPs:

 Score = 135 (47.5 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 29/47 (61%), Positives = 36/47 (76%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKKQASSA----DDDESDKSKSEV 188
             EKAPY AKA KRKAEYEK +K+Y KKQA       +++ES+KS+SEV
Sbjct:    91 EKAPYAAKAEKRKAEYEKSMKSYNKKQAEGPAAVEEEEESEKSESEV 137


 >gi|11346369|pir||T51598  high mobility group protein HMG-beta2 [validated] -
            Arabidopsis thaliana >gi|1694976|emb|CAA70691.1| (Y09482) HMG1
            [Arabidopsis thaliana] >gi|2832361|emb|CAA74402.1| (Y14073) HMG
            protein [Arabidopsis thaliana]
            Length = 141

Frame  3 hits (HSPs):                           ____________________      
                        __________________________________________________
Database sequence:     |                 |                 |              | 141
                       0                50               100

  Plus Strand HSPs:

 Score = 134 (47.2 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 34/61 (55%), Positives = 38/61 (62%), Frame = +3

Query:     6 AGGXXXXXXXDSSL*NVKEKAPYEAKAAKRKAEYEKLIKAYEKK-QASSADDDESDKSKS 182
             AGG       DS      EKAPY AKA KRK EYEK +KAY KK +    +D+ESDKS S
Sbjct:    69 AGGEKWKSLSDS------EKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSVS 122

Query:   183 EV 188
             EV
Sbjct:   123 EV 124


 >gi|123379|sp|P26585|HMGL_SOYBN  HMG1/2-LIKE PROTEIN (SB11 PROTEIN)
            >gi|99914|pir||S22309 high mobility group protein HMG-1 - soybean
            >gi|18645|emb|CAA41200.1| (X58245) HMG-1 like protein gene [Glycine
            max]
            Length = 152

Frame  3 hits (HSPs):                                ________________     
Annotated Domains:      ______________________________________  __________
                        __________________________________________________
Database sequence:     |                |               |                || 152
                       0               50             100              150
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          35..107
   Entrez               dna-binding site: HMG BOX.               44..113
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           124..152
   PFAM                 HMG_box: HMG (high mobility group) box   44..113
   PRODOM               PD019461: HMGL(2) Q41026(1)              1..40
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      42..114
__________________


  Plus Strand HSPs:

 Score = 131 (46.1 bits), Expect = 9.8e-08, P = 9.8e-08
 Identities = 28/46 (60%), Positives = 35/46 (76%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKKQA---SSADDDESDKSKSEV 188
             EKAPY AK+ KRK EYEK ++AY KKQA   +  D++ES+KS SEV
Sbjct:    90 EKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEV 135


 >gi|11346370|pir||T51159  HMG protein [imported] - Arabidopsis thaliana
            >gi|2832357|emb|CAA74400.1| (Y14071) HMG protein [Arabidopsis
            thaliana] >gi|3068715|gb|AAC14415.1| (AF049236) unknown
            [Arabidopsis thaliana]
            Length = 178

Frame  3 hits (HSPs):                              ____________           
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150

  Plus Strand HSPs:

 Score = 127 (44.7 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 27/43 (62%), Positives = 32/43 (74%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSKSEV 188
             EKAPYE KAAKRKAEYEK + AY K     +D  ES+KS+SE+
Sbjct:    99 EKAPYEEKAAKRKAEYEKQMDAYNKNLEEGSD--ESEKSRSEI 139


 >gi|8886929|gb|AAF80615.1|AC069251_8  (AC069251) F2D10.18 [Arabidopsis thaliana]
            Length = 662

Frame  3 hits (HSPs):                                     ____      _____ 
                        __________________________________________________
Database sequence:     |           |          |          |           |    | 662
                       0         150        300        450         600

  Plus Strand HSPs:

 Score = 137 (48.2 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 30/44 (68%), Positives = 33/44 (75%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKK-QASSADDDESDKSKSEV 188
             EKAPY AKA KRK EYEK IKAY KK +    +D+ESDKS SEV
Sbjct:   461 EKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDKSVSEV 504

 Score = 134 (47.2 bits), Expect = 6.8e-07, P = 6.8e-07
 Identities = 34/61 (55%), Positives = 38/61 (62%), Frame = +3

Query:     6 AGGXXXXXXXDSSL*NVKEKAPYEAKAAKRKAEYEKLIKAYEKK-QASSADDDESDKSKS 182
             AGG       DS      EKAPY AKA KRK EYEK +KAY KK +    +D+ESDKS S
Sbjct:   590 AGGEKWKSLSDS------EKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSVS 643

Query:   183 EV 188
             EV
Sbjct:   644 EV 645


 >gi|729737|sp|P40620|HMGL_VICFA  HMG1/2-LIKE PROTEIN >gi|541981|pir||S39556 high
            mobility group protein HMG - fava bean
            Length = 149

Frame  3 hits (HSPs):                                ____________________ 
Annotated Domains:      _______________________________________ __________
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          36..108
   Entrez               dna-binding site: HMG BOX.               45..114
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           121..149
   PFAM                 HMG_box: HMG (high mobility group) box   45..114
   PRODOM               PD019461: HMGL(2) Q41026(1)              1..41
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      43..115
__________________


  Plus Strand HSPs:

 Score = 118 (41.5 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 24/44 (54%), Positives = 31/44 (70%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSKSEV 188
             +EKAPY  +A K+K EYE  ++AY KK     D++ SDKSKSEV
Sbjct:    90 EEKAPYVDRALKKKEEYEITLQAYNKKLEGKDDEEGSDKSKSEV 133

 Score = 77 (27.1 bits), Expect = 2.1, P = 0.88
 Identities = 23/58 (39%), Positives = 30/58 (51%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSKSE--------------- 185
             +EKAPY  +A K+K EYE  ++AY KK     D++ SDKSKSE               
Sbjct:    90 EEKAPYVDRALKKKEEYEITLQAYNKKLEGKDDEEGSDKSKSEVNDEDEDEEDEEDED 147


 >gi|11346367|pir||T51596  high mobility group protein HMG-gamma [validated] -
            Arabidopsis thaliana >gi|2832355|emb|CAA74403.1| (Y14074) HMG
            protein [Arabidopsis thaliana]
            Length = 138

Frame  3 hits (HSPs):                               _________________     
                        __________________________________________________
Database sequence:     |                 |                 |              | 138
                       0                50               100

  Plus Strand HSPs:

 Score = 114 (40.1 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 25/46 (54%), Positives = 32/46 (69%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA--DDDESDKSKSEV 188
             ++KAPY AKA  RK EY K ++ Y  K AS    ++D+SDKSKSEV
Sbjct:    80 EDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREEDDSDKSKSEV 125


 >gi|4914377|gb|AAD32913.1|AC007584_11  (AC007584) putative HMG protein
            [Arabidopsis thaliana]
            Length = 138

Frame  3 hits (HSPs):                               _________________     
                        __________________________________________________
Database sequence:     |                 |                 |              | 138
                       0                50               100

  Plus Strand HSPs:

 Score = 114 (40.1 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 25/46 (54%), Positives = 32/46 (69%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA--DDDESDKSKSEV 188
             ++KAPY AKA  RK EY K ++ Y  K AS    ++D+SDKSKSEV
Sbjct:    80 EDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREEDDSDKSKSEV 125


 >gi|7446228|pir||T03375  high mobility group protein HMGd1 - maize
            >gi|2196672|emb|CAA70045.1| (Y08807) HMGd1 [Zea mays]
            Length = 126

Frame  3 hits (HSPs):                               ___________________   
                        __________________________________________________
Database sequence:     |                   |                   |          | 126
                       0                  50                 100

  Plus Strand HSPs:

 Score = 113 (39.8 bits), Expect = 7.9e-06, P = 7.9e-06
 Identities = 26/44 (59%), Positives = 29/44 (65%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKKQASSAD-DDESDKSKSEV 188
             EKAPY +KA K KAEY K I AY  KQ+       +SDKSKSEV
Sbjct:    74 EKAPYVSKAEKLKAEYTKKIDAYNNKQSGDPTASGDSDKSKSEV 117


 >gi|7446231|pir||T09581  probable high mobility group protein HMG1 - sword bean
            >gi|1813329|dbj|BAA19156.1| (AB000637) HMG-1 [Canavalia gladiata]
            Length = 141

Frame  3 hits (HSPs):                                ________________     
                        __________________________________________________
Database sequence:     |                 |                 |              | 141
                       0                50               100

  Plus Strand HSPs:

 Score = 110 (38.7 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 23/45 (51%), Positives = 33/45 (73%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKKQASS--ADDDESDKSKSEV 188
             EKAP+ A+A K+K EY+K I AY +K      +++++SDKSKSEV
Sbjct:    83 EKAPFVARAEKKKEEYDKSILAYNRKLEGKNPSEEEKSDKSKSEV 127


 >gi|3885888|gb|AAC78104.1|  (AF093632) high mobility group protein [Oryza
            sativa]
            Length = 157

Frame  3 hits (HSPs):                              __________________     
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 110 (38.7 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 28/53 (52%), Positives = 32/53 (60%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEK----------KQASSADDDESDKSKSEV 188
             +KAPY AKA K KAEY K I AY K          K+    D++ESDKSKSEV
Sbjct:    88 DKAPYVAKANKLKAEYNKAIAAYNKGESTAKKAPAKEEEEDDEEESDKSKSEV 140


 >gi|123378|sp|P27347|MNBB_MAIZE  DNA-BINDING PROTEIN MNB1B (HMG1-LIKE PROTEIN)
            >gi|100886|pir||S16670 high mobility group protein - maize
            >gi|539062|pir||B47150 high mobility group protein MNB1b - maize
            >gi|22329|emb|CAA41220.1| (X58282) high mobility group protein [Zea
            mays] >gi|5441502|emb|CAB46752.1| (AJ131373) HMGa protein [Zea
            mays]
            Length = 157

Frame  3 hits (HSPs):                              __________________     
Annotated Domains:      ___________________________________    ___________
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          32..104
   Entrez               dna-binding site: HMG BOX.               41..110
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           124..157
   Entrez               phosphorylation site: (BY CK2) (POTENTIA 149
   PFAM                 HMG_box: HMG (high mobility group) box   41..110
   PRODOM               PD019460: HMGL(1) Q43481(1) Q9ZSU6(1)    1..37
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      39..110
__________________


  Plus Strand HSPs:

 Score = 106 (37.3 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 27/54 (50%), Positives = 34/54 (62%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKKQASSA-----------DDDESDKSKSEV 188
             +KAPY AKA K K EY K I AY K ++++A           D++ESDKSKSEV
Sbjct:    87 DKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEV 140


 >gi|7446229|pir||T03640  high mobility group protein MNB1b - maize (fragment)
            >gi|397396|emb|CAA46876.1| (X66077) DNA-binding protein [Zea mays]
            Length = 168

Frame  3 hits (HSPs):                               _________________     
                        __________________________________________________
Database sequence:     |              |              |              |     | 168
                       0             50            100            150

  Plus Strand HSPs:

 Score = 106 (37.3 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 27/54 (50%), Positives = 34/54 (62%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKKQASSA-----------DDDESDKSKSEV 188
             +KAPY AKA K K EY K I AY K ++++A           D++ESDKSKSEV
Sbjct:    98 DKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEV 151


 >gi|729738|sp|P40621|HMGL_WHEAT  HMG1/2-LIKE PROTEIN >gi|100791|pir||S18991 high
            mobility group protein - wheat >gi|21803|emb|CAA77641.1| (Z11540)
            high mobility group protein [Triticum aestivum]
            Length = 161

Frame  3 hits (HSPs):                              __________________     
Annotated Domains:      ___________________________________     __________
                        __________________________________________________
Database sequence:     |               |              |               |   | 161
                       0              50            100             150
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          33..105
   Entrez               dna-binding site: HMG BOX.               42..111
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           130..161
   PFAM                 HMG_box: HMG (high mobility group) box   42..111
   PRODOM               PD019460: HMGL(1) Q43481(1) Q9ZSU6(1)    1..38
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      40..111
__________________


  Plus Strand HSPs:

 Score = 103 (36.3 bits), Expect = 9.1e-05, P = 9.1e-05
 Identities = 27/57 (47%), Positives = 34/57 (59%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKKQASSA--------------DDDESDKSKSEV 188
             EKAPY AKA K K EY K I AY K ++++A              D++ESDKSKSE+
Sbjct:    88 EKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEI 144


 >gi|950053|emb|CAA90679.1|  (Z50799) HMG1/2-like protein [Hordeum vulgare]
            Length = 160

Frame  3 hits (HSPs):                              __________________     
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150

  Plus Strand HSPs:

 Score = 101 (35.6 bits), Expect = 0.00015, P = 0.00015
 Identities = 28/56 (50%), Positives = 34/56 (60%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEK--------KQASSA-----DDDESDKSKSEV 188
             EKAP+ AKA K K EY K I +Y K        K+ASS      D++ESDKSKSE+
Sbjct:    88 EKAPFVAKANKLKGEYNKAIASYNKGESTTAAPKKASSKEVEEEDEEESDKSKSEI 143


 >gi|729733|sp|Q05783|HMGD_DROME  HIGH MOBILITY GROUP PROTEIN D (HMG-D)
            >gi|539443|pir||A44382 high mobility group protein D - fruit fly
            (Drosophila melanogaster) >gi|157626|gb|AAA28609.1| (M77023) high
            mobility group protein [Drosophila melanogaster]
            >gi|296943|emb|CAA50468.1| (X71138) Hmg-D protein [Drosophila
            melanogaster] >gi|7291330|gb|AAF46759.1| (AE003455) HmgD gene
            product [Drosophila melanogaster]
            Length = 112

Frame  3 hits (HSPs):                       ____________________          
Annotated Domains:      _________________________________           ______
                        __________________________________________________
Database sequence:     |                     |                      |     | 112
                       0                    50                    100
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          1..65
   Entrez               dna-binding site: HMG BOX.               5..71
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           101..112
   PFAM                 HMG_box: HMG (high mobility group) box   5..71
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      4..73
__________________


  Plus Strand HSPs:

 Score = 83 (29.2 bits), Expect = 0.012, P = 0.012
 Identities = 16/44 (36%), Positives = 29/44 (65%), Frame = +3

Query:    54 VKEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSKSE 185
             +K+K+ +EAKAAK K +Y++ +K +E    SSA +    K +++
Sbjct:    46 MKDKSEWEAKAAKAKDDYDRAVKEFEANGGSSAANGGGAKKRAK 89


 >gi|729732|sp|P40627|HMGC_TETTH  HIGH-MOBILITY-GROUP PROTEIN C
            >gi|102394|pir||A39668 high-mobility-group protein C - Tetrahymena
            thermophila (SGC5) (fragment) >gi|161796|gb|AAA30120.1| (M63424)
            high-mobility-group protein C [Tetrahymena thermophila]
            Length = 92

Frame  3 hits (HSPs):                            _______________________  
Annotated Domains:       ______________________________________           
                        __________________________________________________
Database sequence:     |          |          |          |         |       | 92
                       0         20         40         60        80
__________________

Annotated Domains:
   Entrez               dna-binding site: HMG BOX.               4..72
   PFAM                 HMG_box: HMG (high mobility group) box   4..72
__________________


  Plus Strand HSPs:

 Score = 82 (28.9 bits), Expect = 0.015, P = 0.015
 Identities = 17/41 (41%), Positives = 24/41 (58%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSK 179
             KEK  YE   ++ KA+YEK ++AYEKK        +  K+K
Sbjct:    48 KEKKKYETLQSEAKAKYEKALQAYEKKYGKPEKQKKIKKNK 88


 >gi|283626|pir||A43436  high mobility group protein 1a - midge (Chironomus
            tentans)
            Length = 113

Frame  3 hits (HSPs):                      __________________             
Annotated Domains:      _________________________________                 
                        __________________________________________________
Database sequence:     |                     |                     |      | 113
                       0                    50                   100
__________________

Annotated Domains:
   Entrez               domain: HMG box homology #label HMG1     1..74
__________________


  Plus Strand HSPs:

 Score = 82 (28.9 bits), Expect = 0.015, P = 0.015
 Identities = 16/40 (40%), Positives = 25/40 (62%), Frame = +3

Query:    54 VKEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDK 173
             +K+K+ +EAKAAK K EYEK +K +E+     +    + K
Sbjct:    45 MKDKSEWEAKAAKMKEEYEKAMKEFERNGGDKSSGASTKK 84


 >gi|729729|sp|P40622|HMGA_CHITE  MOBILITY GROUP PROTEIN 1A
            >gi|156587|gb|AAA21712.1| (M93253) high mobility group protein 1a
            [Chironomus tentans]
            Length = 114

Frame  3 hits (HSPs):                      __________________             
Annotated Domains:      ________________________________             _____
                        __________________________________________________
Database sequence:     |                     |                     |      | 114
                       0                    50                   100
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          1..65
   Entrez               dna-binding site: HMG BOX.               5..71
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           105..114
   PFAM                 HMG_box: HMG (high mobility group) box   5..71
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      4..73
__________________


  Plus Strand HSPs:

 Score = 82 (28.9 bits), Expect = 0.022, P = 0.022
 Identities = 16/40 (40%), Positives = 25/40 (62%), Frame = +3

Query:    54 VKEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDK 173
             +K+K+ +EAKAAK K EYEK +K +E+     +    + K
Sbjct:    46 MKDKSEWEAKAAKMKEEYEKAMKEFERNGGDKSSGASTKK 85


 >gi|2119033|pir||I45910  high-mobility-group protein - bovine (fragment)
            >gi|163157|gb|AAA30567.1| (M26110) high-mobility-group protein [Bos
            taurus]
            Length = 100

Frame  3 hits (HSPs):               _______________________               
                        __________________________________________________
Database sequence:     |         |         |         |         |          | 100
                       0        20        40        60        80

  Plus Strand HSPs:

 Score = 79 (27.8 bits), Expect = 0.032, P = 0.031
 Identities = 20/45 (44%), Positives = 27/45 (60%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKK---QASSADDDESDKSKSE 185
             +K PYE KAAK K +YEK I AY  K    A+     +++KSK +
Sbjct:    25 DKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 69


 >gi|126226|sp|P11873|LG1_TETTH  NONHISTONE CHROMOSOMAL PROTEIN LG-1
            >gi|84355|pir||A26989 nonhistone chromosomal protein HMG-C -
            Tetrahymena thermophila
            Length = 100

Frame  3 hits (HSPs):                              _____________________  
Annotated Domains:           ____________________________________         
                        __________________________________________________
Database sequence:     |         |         |         |         |          | 100
                       0        20        40        60        80
__________________

Annotated Domains:
   Entrez               dna-binding site: HMG BOX.               12..80
   PFAM                 HMG_box: HMG (high mobility group) box   12..80
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      12..81
__________________


  Plus Strand HSPs:

 Score = 78 (27.5 bits), Expect = 0.041, P = 0.040
 Identities = 17/41 (41%), Positives = 24/41 (58%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSK 179
             KEK  YE   ++ KA+YEK ++AYEKK        +  K+K
Sbjct:    56 KEKKKYETLQSEAKAKYEKDMQAYEKKYGKPEKQKKIKKNK 96


 >gi|729742|sp|P40625|HMG_TETPY  HIGH-MOBILITY-GROUP PROTEIN (NONHISTONE
            CHROMOSOMAL PROTEIN) >gi|84332|pir||JU0038 nonhistone chromosomal
            protein HMG - Tetrahymena pyriformis >gi|364012|prf||1506384A
            chromosomal protein HMG [Tetrahymena pyriformis]
            Length = 99

Frame  3 hits (HSPs):                              _____________________  
Annotated Domains:      _________________________________________         
                        __________________________________________________
Database sequence:     |         |         |         |         |          | 99
                       0        20        40        60        80
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          2..82
   Entrez               dna-binding site: HMG BOX.               11..79
   Entrez               phosphorylation site: (PARTIAL).         16
   Entrez               phosphorylation site: (PARTIAL).         42
   Entrez               phosphorylation site: (PARTIAL).         43
   PFAM                 HMG_box: HMG (high mobility group) box   11..79
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      11..80
__________________


  Plus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 0.066, P = 0.064
 Identities = 18/41 (43%), Positives = 23/41 (56%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSK 179
             KEK  YE    + KA+YEK ++AYEKK        +  KSK
Sbjct:    55 KEKKKYEGLQQEAKAKYEKDMQAYEKKYGKPEKVKKIKKSK 95


 >gi|576153|pdb|1HME|     High Mobility Group Protein Fragment-B (Hmgb)
            (Dna-Binding Hmg-Box Domain B Of Rat Hmg1) (Nmr, 1 Structure)
            >gi|576154|pdb|1HMF|  High Mobility Group Protein Fragment-B (Hmgb)
            (Dna-Binding Hmg-Box Domain B Of Rat Hmg1) (Nmr, 30 Structures)
            Length = 77

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |            |            |            |           | 77
                       0           20           40           60

  Plus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 0.066, P = 0.064
 Identities = 16/26 (61%), Positives = 18/26 (69%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKK 137
             +K PYE KAAK K +YEK I AY  K
Sbjct:    52 DKQPYEKKAAKLKEKYEKDIAAYRAK 77


 >gi|999855|pdb|1NHM|     High Mobility Group Protein 1 (Dna-Binding Domain Box
            2) (Hmg1 Box B) (Nmr, Minimized Average Structure)
            >gi|999856|pdb|1NHN|  High Mobility Group Protein 1 (Hmg1) (Nmr, 41
            Structures)
            Length = 81

Frame  3 hits (HSPs):                                 ________________    
                        __________________________________________________
Database sequence:     |           |            |           |           | | 81
                       0          20           40          60          80

  Plus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 0.066, P = 0.064
 Identities = 16/26 (61%), Positives = 18/26 (69%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKK 137
             +K PYE KAAK K +YEK I AY  K
Sbjct:    50 DKQPYEKKAAKLKEKYEKDIAAYRAK 75


 >gi|1421453|pdb|1HSM|     High Mobility Group Protein 1 (Hmg1) Box 2, Complexed
            With Mercaptoethanol (Nmr, Minimized Average Structure)
            >gi|1421457|pdb|1HSN|  High Mobility Group Protein 1 (Hmg1) Box 2,
            Complexed With Mercaptoethanol (Nmr, 49 Structures)
            Length = 79

Frame  3 hits (HSPs):                                _________________    
                        __________________________________________________
Database sequence:     |            |           |            |            | 79
                       0           20          40           60

  Plus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 0.066, P = 0.064
 Identities = 16/26 (61%), Positives = 18/26 (69%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKK 137
             +K PYE KAAK K +YEK I AY  K
Sbjct:    48 DKQPYEKKAAKLKEKYEKDIAAYRAK 73


 >gi|7446226|pir||T03372  high mobility group protein HMGc1 - maize
            >gi|1845195|emb|CAA69605.1| (Y08297) HMGc1 [Zea mays]
            >gi|5441504|emb|CAB46753.1| (AJ131374) HMGc1 protein [Zea mays]
            Length = 139

Frame  3 hits (HSPs):                              __________________     
                        __________________________________________________
Database sequence:     |                 |                 |              | 139
                       0                50               100

  Plus Strand HSPs:

 Score = 86 (30.3 bits), Expect = 0.072, P = 0.070
 Identities = 19/47 (40%), Positives = 31/47 (65%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAYEKKQASS---ADDDESDKSKSEV 188
             +EK PY  +A ++K +YEK    ++KK+++S   A  ++ D SKSEV
Sbjct:    78 QEKQPYVDQAGQKKQDYEKTKANFDKKESTSSKKAKTEDEDGSKSEV 124


 >gi|104693|pir||JC1129  nonhistone chromosomal protein HMG-2 - chicken
            >gi|211929|gb|AAA48819.1| (M80574) high-mobility group-2 protein
            [Gallus gallus]
            Length = 207

Frame  3 hits (HSPs):                                   __________        
Annotated Domains:       ___________________ ___________________          
                        __________________________________________________
Database sequence:     |           |           |           |            | | 207
                       0          50         100         150          200
__________________

Annotated Domains:
   Entrez               domain: HMG box homology #label HMG1     6..83
   Entrez               domain: HMG box homology #label HMG2     92..166
   PROSITE              HMG1_2: HMG1/2 signature.                41..52
__________________


  Plus Strand HSPs:

 Score = 89 (31.3 bits), Expect = 0.11, P = 0.10
 Identities = 19/34 (55%), Positives = 22/34 (64%), Frame = +3

Query:    51 NVKEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA 152
             + K+K PYE KAAK K +YEK I AY  K  S A
Sbjct:   137 SAKDKQPYEQKAAKLKEKYEKDIAAYRAKSKSDA 170

 Score = 76 (26.8 bits), Expect = 6.5, P = 1.0
 Identities = 20/43 (46%), Positives = 24/43 (55%), Frame = +3

Query:    51 NVKEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSK 179
             + K+K PYE KAAK K +YEK I AY  K        +SD  K
Sbjct:   137 SAKDKQPYEQKAAKLKEKYEKDIAAYRAKS-------KSDAGK 172


 >gi|123373|sp|P26584|HMG2_CHICK  HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2)
            >gi|86284|pir||JC1114 high-mobility group protein 2 - chicken
            >gi|211927|gb|AAA48818.1| (M83235) non-histone chromosomal protein
            [Gallus gallus]
            Length = 207

Frame  3 hits (HSPs):                                    _________        
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |           |           |           |            | | 207
                       0          50         100         150          200
__________________

Annotated Domains:
   BLOCKS               BL00353A: HMG1/2 proteins.               1..49
   BLOCKS               BL00353B: HMG1/2 proteins.               77..126
   BLOCKS               BL00353C: HMG1/2 proteins.               127..173
   Entrez               dna-binding site: HMG BOX 1.             9..79
   Entrez               dna-binding site: HMG BOX 2.             95..163
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           186..207
   PFAM                 HMG_box: HMG (high mobility group) box   5..78
   PFAM                 HMG_box: HMG (high mobility group) box   94..162
   PRINTS               1: High mobility group prote 39..61
   PRINTS               2: High mobility group prote 62..82
   PRINTS               3: High mobility group prote 109..127
   PRINTS               4: High mobility group prote 127..146
   PRINTS               5: High mobility group prote 146..166
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      6..85
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      92..163
   PRODOM               PD056519: HMG2_CHICK                     165..185
   PROSITE              HMG1_2: HMG1/2 signature.                41..52
__________________


  Plus Strand HSPs:

 Score = 88 (31.0 bits), Expect = 0.15, P = 0.14
 Identities = 19/32 (59%), Positives = 21/32 (65%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA 152
             K+K PYE KAAK K +YEK I AY  K  S A
Sbjct:   139 KDKQPYEQKAAKLKEKYEKDIAAYRAKSKSDA 170

 Score = 75 (26.4 bits), Expect = 9.0, P = 1.0
 Identities = 20/41 (48%), Positives = 23/41 (56%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDDESDKSK 179
             K+K PYE KAAK K +YEK I AY  K        +SD  K
Sbjct:   139 KDKQPYEQKAAKLKEKYEKDIAAYRAKS-------KSDAGK 172


 >gi|7446227|pir||T03374  high mobility group protein HMGc2 - maize
            >gi|1845197|emb|CAA69606.1| (Y08298) HMGc2 [Zea mays]
            Length = 138

Frame  3 hits (HSPs):                               _________________     
                        __________________________________________________
Database sequence:     |                 |                 |              | 138
                       0                50               100

  Plus Strand HSPs:

 Score = 84 (29.6 bits), Expect = 0.15, P = 0.14
 Identities = 20/45 (44%), Positives = 27/45 (60%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAYEKKQASS-ADDDESDKSKSEV 188
             +EK PY  +A ++K +YEK     EK  +S  A  D+ D SKSEV
Sbjct:    79 QEKQPYVDQAGQKKQDYEKTKANIEKSTSSKKAKTDDDDGSKSEV 123


 >gi|11321591  ref|NP_002120.1| high-mobility group (nonhistone chromosomal)
            protein 2 [Homo sapiens] >gi|12730730 ref|XP_011179.1|
            high-mobility group (nonhistone chromosomal) protein 2 [Homo
            sapiens] >gi|123374|sp|P26583|HMG2_HUMAN HIGH MOBILITY GROUP
            PROTEIN HMG2 (HMG-2) >gi|70785|pir||NSHUH2 nonhistone chromosomal
            protein HMG-2 - human >gi|32333|emb|CAA44395.1| (X62534) HMG-2
            [Homo sapiens] >gi|184236|gb|AAA58659.1| (M83665) high mobility
            group 2 protein [Homo sapiens] >gi|12654171|gb|AAH00903.1|AAH00903
            (BC000903) high-mobility group (nonhistone chromosomal) protein 2
            [Homo sapiens] >gi|12654471|gb|AAH01063.1|AAH01063 (BC001063)
            high-mobility group (nonhistone chromosomal) protein 2 [Homo
            sapiens] >gi|738688|prf||2001363A high mobility group protein 2
            [Homo sapiens]
            Length = 209

Frame  3 hits (HSPs):                                   _________         
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 209
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 87 (30.6 bits), Expect = 0.22, P = 0.20
 Identities = 19/34 (55%), Positives = 22/34 (64%), Frame = +3

Query:    51 NVKEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA 152
             + K+K PYE KAAK K +YEK I AY  K  S A
Sbjct:   137 SAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEA 170


 >gi|6680229  ref|NP_032278.1| high mobility group protein 2 [Mus musculus]
            >gi|1708259|sp|P30681|HMG2_MOUSE HIGH MOBILITY GROUP PROTEIN HMG2
            (HMG-2) >gi|1363146|pir||S54774 high mobility group 2 protein -
            mouse >gi|609169|emb|CAA86727.1| (Z46757) high mobility group 2
            protein [Mus musculus]
            Length = 210

Frame  3 hits (HSPs):                                   _________         
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 210
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 87 (30.6 bits), Expect = 0.22, P = 0.20
 Identities = 19/34 (55%), Positives = 22/34 (64%), Frame = +3

Query:    51 NVKEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA 152
             + K+K PYE KAAK K +YEK I AY  K  S A
Sbjct:   137 SAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEA 170


 >gi|11527222|gb|AAG36939.1|AF267733_1  (AF267733) high mobility group protein 2
            [Mus musculus]
            Length = 210

Frame  3 hits (HSPs):                                   _________         
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 210
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 87 (30.6 bits), Expect = 0.22, P = 0.20
 Identities = 19/34 (55%), Positives = 22/34 (64%), Frame = +3

Query:    51 NVKEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA 152
             + K+K PYE KAAK K +YEK I AY  K  S A
Sbjct:   137 SAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEA 170


 >gi|1421267|pdb|1HMA|     Hmg-D (Hmg-Box Domain, Residues 2 - 74) (Nmr, 20
            Structures)
            Length = 73

Frame  3 hits (HSPs):                                 __________________  
                        __________________________________________________
Database sequence:     |             |            |             |         | 73
                       0            20           40            60

  Plus Strand HSPs:

 Score = 71 (25.0 bits), Expect = 0.26, P = 0.23
 Identities = 12/26 (46%), Positives = 21/26 (80%), Frame = +3

Query:    54 VKEKAPYEAKAAKRKAEYEKLIKAYE 131
             +K+K+ +EAKAAK K +Y++ +K +E
Sbjct:    45 MKDKSEWEAKAAKAKDDYDRAVKEFE 70


 >gi|6730529|pdb|1QRV|A  Chain A, Crystal Structure Of The Complex Of Hmg-D And
            Dna >gi|6730530|pdb|1QRV|B Chain B, Crystal Structure Of The
            Complex Of Hmg-D And Dna
            Length = 73

Frame  3 hits (HSPs):                                 __________________  
                        __________________________________________________
Database sequence:     |             |            |             |         | 73
                       0            20           40            60

  Plus Strand HSPs:

 Score = 71 (25.0 bits), Expect = 0.26, P = 0.23
 Identities = 12/26 (46%), Positives = 21/26 (80%), Frame = +3

Query:    54 VKEKAPYEAKAAKRKAEYEKLIKAYE 131
             +K+K+ +EAKAAK K +Y++ +K +E
Sbjct:    45 MKDKSEWEAKAAKAKDDYDRAVKEFE 70


 >gi|422864|pir||S30221  nonhistone chromosomal protein HMG-2B - human (fragment)
            >gi|32335|emb|CAA78938.1| (Z17240) HMG2B [Homo sapiens]
            Length = 186

Frame  3 hits (HSPs):                                 __________          
Annotated Domains:          ____          _____________________           
                        __________________________________________________
Database sequence:     |             |            |             |         | 186
                       0            50          100           150
__________________

Annotated Domains:
   Entrez               domain: HMG box homology #label HMG1     69..143
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  138..145
   PROSITE              HMG1_2: HMG1/2 signature.                18..29
__________________


  Plus Strand HSPs:

 Score = 85 (29.9 bits), Expect = 0.31, P = 0.27
 Identities = 19/34 (55%), Positives = 22/34 (64%), Frame = +3

Query:    51 NVKEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA 152
             + K+K PYE KAAK K +YEK I AY  K  S A
Sbjct:   114 SAKDKQPYEQKAAKLKEKYEKDIAAYGAKGKSEA 147


 >gi|2119031|pir||I48408  high mobility group 2 protein - mouse
            >gi|7439855|pir||S26062 nonhistone chromosomal protein HMG-2 -
            mouse >gi|51339|emb|CAA47900.1| (X67668) high mobility group 2
            protein [Mus musculus]
            Length = 205

Frame  3 hits (HSPs):                                    _________        
Annotated Domains:               ____       _____________________         
                        __________________________________________________
Database sequence:     |           |            |           |           | | 205
                       0          50          100         150         200
__________________

Annotated Domains:
   DOMO                 DM00056: HMGBOX                          86..157
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  161..168
   PROSITE              HMG1_2: HMG1/2 signature.                41..52
__________________


  Plus Strand HSPs:

 Score = 85 (29.9 bits), Expect = 0.39, P = 0.32
 Identities = 19/34 (55%), Positives = 21/34 (61%), Frame = +3

Query:    51 NVKEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA 152
             + KEK PYE KAAK K +YEK   AY  K  S A
Sbjct:   137 SAKEKQPYEQKAAKLKEKYEKDFAAYRVKGKSEA 170


 >gi|109967|pir||S25487  nonhistone chromosomal protein HMG-2 - mouse
            Length = 209

Frame  3 hits (HSPs):                                   _________         
Annotated Domains:       ___________________ ___________________          
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 209
                       0          50         100         150         200
__________________

Annotated Domains:
   Entrez               domain: HMG box homology #label HMG1     6..83
   Entrez               domain: HMG box homology #label HMG2     92..166
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  161..168
   PROSITE              HMG1_2: HMG1/2 signature.                41..52
__________________


  Plus Strand HSPs:

 Score = 85 (29.9 bits), Expect = 0.41, P = 0.34
 Identities = 19/34 (55%), Positives = 21/34 (61%), Frame = +3

Query:    51 NVKEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA 152
             + KEK PYE KAAK K +YEK   AY  K  S A
Sbjct:   137 SAKEKQPYEQKAAKLKEKYEKDFAAYRVKGKSEA 170


 >gi|4468042|emb|CAB37859.1|  (Z21703) HMG_box [Vicia faba]
            Length = 74

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |            |             |            |          | 74
                       0           20            40           60

  Plus Strand HSPs:

 Score = 68 (23.9 bits), Expect = 0.60, P = 0.45
 Identities = 13/24 (54%), Positives = 18/24 (75%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAY 128
             +EKAPY  +A K+K EYE  ++AY
Sbjct:    51 EEKAPYVDRALKKKEEYEITLQAY 74


 >gi|2119032|pir||I51067  gene HMG-T2 protein - rainbow trout
            >gi|609553|gb|AAA74556.1| (L32954) HMG-T2 gene product
            [Oncorhynchus mykiss]
            Length = 215

Frame  3 hits (HSPs):                                   ________          
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 84 (29.6 bits), Expect = 0.62, P = 0.46
 Identities = 17/32 (53%), Positives = 23/32 (71%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA 152
             K+K P+EAKAAK K +YEK + AY+ K  + A
Sbjct:   141 KDKQPHEAKAAKLKEKYEKDVAAYKAKGGAGA 172


 >gi|123375|sp|P17741|HMG2_PIG  HIGH MOBILITY GROUP PROTEIN HMG2 (HMG-2)
            >gi|108366|pir||A34719 nonhistone chromosomal protein HMG-2 - pig
            >gi|164492|gb|AAA31051.1| (J02895) non-histone protein HMG2
            precursor [Sus scrofa]
            Length = 210

Frame  3 hits (HSPs):                                   _________         
Annotated Domains:      ____________________ _____________________________
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 210
                       0          50         100         150         200
__________________

Annotated Domains:
   Entrez               dna-binding site: HMG BOX 1.             9..79
   Entrez               dna-binding site: HMG BOX 2.             95..163
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           186..210
   PFAM                 HMG_box: HMG (high mobility group) box   5..78
   PFAM                 HMG_box: HMG (high mobility group) box   94..162
   PRINTS               1: High mobility group prote 39..61
   PRINTS               2: High mobility group prote 62..82
   PRINTS               3: High mobility group prote 109..127
   PRINTS               4: High mobility group prote 127..146
   PRINTS               5: High mobility group prote 146..166
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      6..76
   PRODOM               PD000156: HMG1(10) HMG2(10) UBF1(7)      92..164
   PRODOM               PD056516: HMG2_PIG                       166..185
   PROSITE              HMG1_2: HMG1/2 signature.                41..52
__________________


  Plus Strand HSPs:

 Score = 83 (29.2 bits), Expect = 0.80, P = 0.55
 Identities = 18/34 (52%), Positives = 21/34 (61%), Frame = +3

Query:    51 NVKEKAPYEAKAAKRKAEYEKLIKAYEKKQASSA 152
             + K+K PYE KAAK K +YEK I AY  K    A
Sbjct:   137 SAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKGEA 170


 >gi|8393536  ref|NP_058883.1| high mobility group protein 2 [Rattus norvegicus]
            >gi|1708260|sp|P52925|HMG2_RAT HIGH MOBILITY GROUP PROTEIN HMG2
            (HMG-2) >gi|1304193|dbj|BAA12350.1| (D84418) HMG2 [Rattus
            norvegicus]
            Length = 210

Frame  3 hits (HSPs):                                   ________          
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 210
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 83 (29.2 bits), Expect = 0.80, P = 0.55
 Identities = 18/32 (56%), Positives = 21/32 (65%), Frame = +3

Query:    51 NVKEKAPYEAKAAKRKAEYEKLIKAYEKKQAS 146
             + K+K PYE KAAK K +YEK I AY  K  S
Sbjct:   137 SAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKS 168


 >gi|3342573|gb|AAC27651.1|  (AF078818) high mobility group protein [Spalax
            ehrenbergi]
            Length = 215

Frame  3 hits (HSPs):                                   ___________       
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 81 (28.5 bits), Expect = 1.6, P = 0.80
 Identities = 20/45 (44%), Positives = 27/45 (60%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKKQASSADDD---ESDKSKSE 185
             +K PYE KAAK K +YEK I AY  K    A  +   +++KSK +
Sbjct:   140 DKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKEGVVKAEKSKKK 184


 >gi|90208|pir||A27853  nonhistone chromosomal protein HMG-1 - Chinese hamster
            (fragment)
            Length = 170

Frame  3 hits (HSPs):                              ______________         
Annotated Domains:      ___________  _______________________              
                        __________________________________________________
Database sequence:     |              |              |             |      | 170
                       0             50            100           150
__________________

Annotated Domains:
   Entrez               domain: HMG box homology (fragment) #lab 1..38
   Entrez               domain: HMG box homology #label HMG2     47..121
__________________


  Plus Strand HSPs:

 Score = 79 (27.8 bits), Expect = 1.7, P = 0.81
 Identities = 20/45 (44%), Positives = 27/45 (60%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKK---QASSADDDESDKSKSE 185
             +K PYE KAAK K +YEK I AY  K    A+     +++KSK +
Sbjct:    95 DKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 139


 >gi|123368|sp|P07156|HMG1_CRIGR  HIGH MOBILITY GROUP PROTEIN HMG1 (HMG-1)
            >gi|49483|emb|CAA68441.1| (Y00365) high mobility group protein
            [Cricetulus griseus]
            Length = 180

Frame  3 hits (HSPs):                               ______________        
Annotated Domains:      ____________    ____________________     _________
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   Entrez               dna-binding site: HMG BOX 1.             1..44
   Entrez               dna-binding site: HMG BOX 2.             60..128
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           151..180
   PFAM                 HMG_box: HMG (high mobility group) box   2..44
   PFAM                 HMG_box: HMG (high mobility group) box   60..128
   PROSITE              HMG1_2: HMG1/2 signature.                6..17
__________________


  Plus Strand HSPs:

 Score = 79 (27.8 bits), Expect = 1.9, P = 0.85
 Identities = 20/45 (44%), Positives = 27/45 (60%), Frame = +3

Query:    60 EKAPYEAKAAKRKAEYEKLIKAYEKK---QASSADDDESDKSKSE 185
             +K PYE KAAK K +YEK I AY  K    A+     +++KSK +
Sbjct:   105 DKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK 149


 >gi|7488917|pir||T14286  embryogenic callus protein 98b - carrot
            >gi|3551257|dbj|BAA32827.1| (AB012708) 98b [Daucus carota]
            Length = 502

Frame  3 hits (HSPs):                                   ______            
                        __________________________________________________
Database sequence:     |              |              |              |     | 502
                       0            150            300            450

  Plus Strand HSPs:

 Score = 84 (29.6 bits), Expect = 2.4, P = 0.91
 Identities = 19/44 (43%), Positives = 28/44 (63%), Frame = +3

Query:    57 KEKAPYEAKAAKRKAEYEKLIKAYEKK---QASSADDDESDKSK 179
             KEKAPYE  A K K +Y + ++ Y+KK   +A+S   +E + SK
Sbjct:   332 KEKAPYEEMAKKNKNQYLQQMEVYKKKKDEEAASLQKEEEELSK 375


WARNING:  HSPs involving 23 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.97

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.347   0.154   0.538  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.383   0.178   0.652  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.355   0.159   0.537  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.349   0.151   0.482  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.343   0.148   0.497  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.359   0.160   0.577  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      171       136       10.  73 3  12 22  0.11    33
                                                    30  0.10    36
   +2      0      172       136       10.  73 3  12 22  0.11    33
                                                    30  0.10    36
   +1      0      172       137       10.  73 3  12 22  0.11    33
                                                    30  0.10    36
   -1      0      172       137       10.  73 3  12 22  0.11    33
                                                    30  0.10    36
   -2      0      172       136       10.  73 3  12 22  0.11    33
                                                    30  0.10    36
   -3      0      171       136       10.  73 3  12 22  0.11    33
                                                    30  0.10    36


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  73
  No. of states in DFA:  593 (58 KB)
  Total size of DFA:  162 KB (192 KB)
  Time to generate neighborhood:  0.01u 0.01s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  126.80u 1.05s 127.85t  Elapsed: 00:00:26
  Total cpu time:  126.87u 1.06s 127.93t  Elapsed: 00:00:26
  Start:  Wed Jan 23 14:07:23 2002   End:  Wed Jan 23 14:07:49 2002

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000