R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7514364|pir||A75028 cdp-abequose synthase (EC 4.2.1.-) PAB1188 - Pyrococcus
abyssi (strain Orsay) >gi|5459177|emb|CAB50663.1| (AJ248288)
CDP-ABEQUOSE SYNTHASE (EC 4.2.1.-) [Pyrococcus abyssi]
Length = 259
Frame 2 hits (HSPs): _____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 259
0 50 100 150 200 250
Plus Strand HSPs:
Score = 58 (20.4 bits), Expect = 0.024, Sum P(2) = 0.024
Identities = 10/25 (40%), Positives = 13/25 (52%), Frame = +2
Query: 11 LAEDADNVPFLIGWLWYLFSPPFGW 85
L + N L+ WLW F P FG+
Sbjct: 100 LWREVSNAKILVHWLWVRFLPHFGF 124
Score = 45 (15.8 bits), Expect = 0.024, Sum P(2) = 0.024
Identities = 8/20 (40%), Positives = 10/20 (50%), Frame = +1
Query: 76 FWLAVVTFFPTSLLFSPSHF 135
F + + F P L SP HF
Sbjct: 143 FGVTTLEFIPAHFLHSPGHF 162
Score = 38 (13.4 bits), Expect = 0.12, Sum P(2) = 0.12
Identities = 7/16 (43%), Positives = 11/16 (68%), Frame = +1
Query: 91 VTFFPTSLLFSPSHFV 138
+ F T+L F P+HF+
Sbjct: 141 INFGVTTLEFIPAHFL 156
>gi|7519365|pir||C71213 hypothetical protein PH1971 - Pyrococcus horikoshii
>gi|3258415|dbj|BAA31098.1| (AP000007) 258aa long hypothetical
protein [Pyrococcus horikoshii]
Length = 258
Frame 2 hits (HSPs): ______
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | 258
0 50 100 150 200 250
Plus Strand HSPs:
Score = 56 (19.7 bits), Expect = 0.062, Sum P(2) = 0.061
Identities = 10/25 (40%), Positives = 13/25 (52%), Frame = +2
Query: 11 LAEDADNVPFLIGWLWYLFSPPFGW 85
L + N +I WLW F P FG+
Sbjct: 99 LWREISNAKIIIHWLWVRFLPHFGF 123
Score = 43 (15.1 bits), Expect = 0.062, Sum P(2) = 0.061
Identities = 8/20 (40%), Positives = 9/20 (45%), Frame = +1
Query: 76 FWLAVVTFFPTSLLFSPSHF 135
F + F P L SP HF
Sbjct: 142 FGATTLEFIPAHFLHSPGHF 161
Score = 37 (13.0 bits), Expect = 0.25, Sum P(2) = 0.22
Identities = 7/16 (43%), Positives = 11/16 (68%), Frame = +1
Query: 91 VTFFPTSLLFSPSHFV 138
+ F T+L F P+HF+
Sbjct: 140 LNFGATTLEFIPAHFL 155
>gi|2104729|gb|AAB64419.1| (U96487) ORF1 [Desulfurococcus sp. SY]
Length = 255
Frame 2 hits (HSPs): ______
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 255
0 50 100 150 200 250
Plus Strand HSPs:
Score = 55 (19.4 bits), Expect = 0.077, Sum P(2) = 0.074
Identities = 9/25 (36%), Positives = 13/25 (52%), Frame = +2
Query: 11 LAEDADNVPFLIGWLWYLFSPPFGW 85
L + N ++ WLW F P FG+
Sbjct: 96 LWREVSNAKIIVHWLWTRFLPHFGF 120
Score = 43 (15.1 bits), Expect = 0.077, Sum P(2) = 0.074
Identities = 8/20 (40%), Positives = 9/20 (45%), Frame = +1
Query: 76 FWLAVVTFFPTSLLFSPSHF 135
F + F P L SP HF
Sbjct: 139 FGATTLEFIPAHFLHSPGHF 158
Score = 36 (12.7 bits), Expect = 0.39, Sum P(2) = 0.32
Identities = 7/14 (50%), Positives = 10/14 (71%), Frame = +1
Query: 97 FFPTSLLFSPSHFV 138
F T+L F P+HF+
Sbjct: 139 FGATTLEFIPAHFL 152
>gi|540860|pir||JQ2367 small hydrophobic protein - mumps virus
Length = 57
Frame -1 hits (HSPs): ________________
Frame -3 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 57
0 20 40
Minus Strand HSPs:
Score = 40 (14.1 bits), Expect = 0.73, Sum P(2) = 0.52
Identities = 6/21 (28%), Positives = 11/21 (52%), Frame = -3
Query: 130 VREKTTKKWGKMLQQPAKRWG 68
+ KT ++ + Q+ RWG
Sbjct: 32 INHKTAVRYAALYQRSFSRWG 52
Score = 36 (12.7 bits), Expect = 0.73, Sum P(2) = 0.52
Identities = 10/20 (50%), Positives = 12/20 (60%), Frame = -1
Query: 228 TILQL*IITVIKWLALYIIH 169
T+L L IIT+ W L I H
Sbjct: 16 TLLYL-IITLYVWTILTINH 34
>gi|139589|sp|P19719|VSH_MUMP1 SMALL HYDROPHOBIC PROTEIN >gi|74996|pir||SHNZMV
small hydrophobic protein - mumps virus (strains SBL-1 and SBL)
>gi|60587|emb|CAA45233.1| (X63704) SH gene [Mumps virus]
>gi|222154|dbj|BAA00562.1| (D00663) small hydrophobic SH protein
[Mumps virus] >gi|556279|gb|AAA50290.1| (M25421) small hydrophobic
protein [Mumps virus] >gi|1840437|gb|AAC56581.1| (U50283) SH
protein [Mumps virus]
Length = 57
Frame -1 hits (HSPs): ________________
Frame -3 hits (HSPs): __________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 57
0 20 40
__________________
Annotated Domains:
DOMO DM04694: MUMPSVIRUSSMALLHYDROPHOBICPROTE 1..56
Entrez Transmembrane region: POTENTIAL. 8..32
PFAM SH: Viral small hydrophobic protein 1..57
PRODOM PD001504: VSH(13) 27..56
__________________
Minus Strand HSPs:
Score = 42 (14.8 bits), Expect = 0.82, Sum P(2) = 0.56
Identities = 6/21 (28%), Positives = 11/21 (52%), Frame = -3
Query: 130 VREKTTKKWGKMLQQPAKRWG 68
+ KT ++ + Q+ RWG
Sbjct: 32 INHKTAVRYAALYQRSCSRWG 52
Score = 32 (11.3 bits), Expect = 0.82, Sum P(2) = 0.56
Identities = 9/19 (47%), Positives = 10/19 (52%), Frame = -1
Query: 225 ILQL*IITVIKWLALYIIH 169
IL IIT+ W L I H
Sbjct: 16 ILLYLIITLYVWTILTINH 34
>gi|139583|sp|P22109|VSH_MUMPE SMALL HYDROPHOBIC PROTEIN >gi|279765|pir||SHNZME
small hydrophobic protein - mumps virus (strain Enders)
>gi|60589|emb|CAA45235.1| (X63705) SH gene [Mumps virus]
>gi|222157|dbj|BAA14279.1| (D90231) small-hydrophobic protein
[Mumps virus] >gi|575673|emb|CAA51449.1| (X72944) SH [Mumps virus]
Length = 57
Frame -1 hits (HSPs): ________________
Frame -3 hits (HSPs): __________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 57
0 20 40
__________________
Annotated Domains:
Entrez Transmembrane region: POTENTIAL. 8..32
PFAM SH: Viral small hydrophobic protein 1..57
PRODOM PD001504: VSH(13) 27..56
__________________
Minus Strand HSPs:
Score = 42 (14.8 bits), Expect = 0.82, Sum P(2) = 0.56
Identities = 6/21 (28%), Positives = 11/21 (52%), Frame = -3
Query: 130 VREKTTKKWGKMLQQPAKRWG 68
+ KT ++ + Q+ RWG
Sbjct: 32 INHKTAVRYAALYQRSCSRWG 52
Score = 32 (11.3 bits), Expect = 0.82, Sum P(2) = 0.56
Identities = 9/19 (47%), Positives = 10/19 (52%), Frame = -1
Query: 225 ILQL*IITVIKWLALYIIH 169
IL IIT+ W L I H
Sbjct: 16 ILLYLIITLYVWTILTINH 34
>gi|7301162|gb|AAF56295.1| (AE003747) CG17782 gene product [Drosophila
melanogaster]
Length = 479
Frame -1 hits (HSPs): ____
Frame -3 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | 479
0 150 300 450
Minus Strand HSPs:
Score = 56 (19.7 bits), Expect = 1.8, Sum P(2) = 0.83
Identities = 13/33 (39%), Positives = 20/33 (60%), Frame = -1
Query: 111 RSGEKCYNSQPKGGEKR-YHSHPIRNGTLSASS 16
R + Y+S+PKGG ++ H + R G S+SS
Sbjct: 231 RYADSYYSSRPKGGRRKDNHYYYSRPGVSSSSS 263
Score = 35 (12.3 bits), Expect = 1.8, Sum P(2) = 0.83
Identities = 6/13 (46%), Positives = 9/13 (69%), Frame = -3
Query: 199 DQMVSSLHHTQYL 161
D++V + HT YL
Sbjct: 114 DEIVGVVDHTNYL 126
>gi|5830457|emb|CAB54852.1| (AJ010568) hypothetical protein [Methanosarcina
thermophila]
Length = 43
Frame 3 hits (HSPs): _______________
Frame 2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | 43
0 20 40
Plus Strand HSPs:
Score = 38 (13.4 bits), Expect = 2.1, Sum P(2) = 0.87
Identities = 7/13 (53%), Positives = 10/13 (76%), Frame = +2
Query: 32 VPFLIGW-LWYLF 67
+PFL W L++LF
Sbjct: 11 LPFLFSWILFFLF 23
Score = 32 (11.3 bits), Expect = 2.1, Sum P(2) = 0.87
Identities = 5/13 (38%), Positives = 8/13 (61%), Frame = +3
Query: 96 IFPHFFVVFSLTF 134
+FPH ++ S F
Sbjct: 22 LFPHLHLILSEIF 34
>gi|7464385|pir||D64624 hypothetical protein HP0836 - Helicobacter pylori
(strain 26695) >gi|2313978|gb|AAD07893.1| (AE000595) H. pylori
predicted coding region HP0836 [Helicobacter pylori 26695]
Length = 119
Frame -3 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | 119
0 50 100
Minus Strand HSPs:
Score = 61 (21.5 bits), Expect = 2.2, P = 0.89
Identities = 19/47 (40%), Positives = 23/47 (48%), Frame = -3
Query: 223 SPALNNYSDQMVSSLHHTQYLHATPLLC*QNVREKTTKKWGKMLQQP 83
SP L N +DQ V S + T + TP+L NV E W LQ P
Sbjct: 66 SPRLEN-NDQPVISSNPTNAIPNTPILTPNNVIELNAWAWA-WLQNP 110
>gi|6708457|gb|AAF25944.1|AF213396_1 (AF213396) fibroblast growth factor 10
[Ovis aries]
Length = 213
Frame 3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 213
0 50 100 150 200
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 3.8, P = 0.98
Identities = 14/33 (42%), Positives = 20/33 (60%), Frame = +3
Query: 30 MCRFLLGGCGIFFPHLLAGCCNIFPHFFVVFSL 128
M +++L C FPHL +GCC F F+V S+
Sbjct: 1 MWKWILTHCASAFPHL-SGCCCCFLLLFLVSSV 32
>gi|903694|gb|AAA87330.1| (M57645) cytochrome c oxidase subunit I [Beta
vulgaris]
Length = 516
Frame 2 hits (HSPs): __
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | 516
0 150 300 450
Plus Strand HSPs:
Score = 55 (19.4 bits), Expect = 4.3, Sum P(2) = 0.99
Identities = 10/26 (38%), Positives = 16/26 (61%), Frame = +1
Query: 76 FWLAVVTFFPTSLLFSPSHFVSIAAV 153
FW +TFF +L F P HF+ ++ +
Sbjct: 409 FW---ITFFGVNLTFFPMHFLGLSGM 431
Score = 33 (11.6 bits), Expect = 4.3, Sum P(2) = 0.99
Identities = 6/8 (75%), Positives = 6/8 (75%), Frame = +2
Query: 29 NVPFLIGW 52
N PFLI W
Sbjct: 213 NRPFLIRW 220
>gi|82536|pir||JQ0210 hypothetical 8.3K protein (trnI-trnC intergenic region) -
rice chloroplast >gi|11968|emb|CAA33983.1| (X15901) ORF70 [Oryza
sativa] >gi|226686|prf||1603356L ORF 70 [Oryza sativa]
Length = 70
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 70
0 20 40 60
Plus Strand HSPs:
Score = 58 (20.4 bits), Expect = 4.3, P = 0.99
Identities = 14/30 (46%), Positives = 17/30 (56%), Frame = +2
Query: 41 LIGWLWYLFSP---PFGWLL*HFSPLLCCF 121
LIGW F+P P+GW+L LL CF
Sbjct: 12 LIGWGINEFAPFIYPYGWVLIFSDILLVCF 41
>gi|1170401|sp|P42143|HSP1_NOTTY SPERM PROTAMINE P1 >gi|598338|gb|AAA74613.1|
(L35446) protamine P1 [Notoryctes typhlops]
>gi|1582122|prf||2117429Q protamine P1 [Notoryctes typhlops]
Length = 61
Frame -1 hits (HSPs): ____________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
DOMO DM01168: PROTAMINEP1 1..59
PFAM protamine_P1: Protamine P1 1..59
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2..58
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Minus Strand HSPs:
Score = 58 (20.4 bits), Expect = 4.3, P = 0.99
Identities = 10/25 (40%), Positives = 16/25 (64%), Frame = -1
Query: 123 RKQQRSGEKCYNSQPKGGEKRYHSH 49
R+ +RSG + + +G +RYHSH
Sbjct: 33 RRHRRSGRRRRRGRRRGYRRRYHSH 57
>gi|3757788|gb|AAC64233.1| (AF013767) MHC class II antigen [Homo sapiens]
Length = 108
Frame -3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | 108
0 20 40 60 80 100
Minus Strand HSPs:
Score = 57 (20.1 bits), Expect = 5.5, P = 1.0
Identities = 11/29 (37%), Positives = 16/29 (55%), Frame = -3
Query: 226 NSPALNNYSDQMVSSLHHTQYLHATPLLC 140
N LNN + ++ +HTQ + TP LC
Sbjct: 72 NIAILNNNLNTLIQRSNHTQATNGTPYLC 100
>gi|5381293|gb|AAD42927.1| (AF076284) MHC class II antigen [Homo sapiens]
Length = 93
Frame -3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | 93
0 20 40 60 80
Minus Strand HSPs:
Score = 57 (20.1 bits), Expect = 5.5, P = 1.0
Identities = 11/29 (37%), Positives = 16/29 (55%), Frame = -3
Query: 226 NSPALNNYSDQMVSSLHHTQYLHATPLLC 140
N LNN + ++ +HTQ + TP LC
Sbjct: 58 NIAILNNNLNTLIQRSNHTQATNGTPYLC 86
>gi|5381295|gb|AAD42928.1| (AF076285) MHC class II antigen [Homo sapiens]
Length = 93
Frame -3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | 93
0 20 40 60 80
Minus Strand HSPs:
Score = 57 (20.1 bits), Expect = 5.5, P = 1.0
Identities = 11/29 (37%), Positives = 16/29 (55%), Frame = -3
Query: 226 NSPALNNYSDQMVSSLHHTQYLHATPLLC 140
N LNN + ++ +HTQ + TP LC
Sbjct: 58 NIAILNNNLNTLIQRSNHTQAANGTPYLC 86
>gi|3724000|emb|CAA13044.1| (AJ228465) cytochrome b [Andricus mayri]
Length = 144
Frame 2 hits (HSPs): _____ ____
__________________________________________________
Database sequence: | | | | 144
0 50 100
Plus Strand HSPs:
Score = 51 (18.0 bits), Expect = 6.3, Sum P(2) = 1.0
Identities = 8/10 (80%), Positives = 10/10 (100%), Frame = +2
Query: 107 LLCCFLPHIL 136
LLCCF+P+IL
Sbjct: 102 LLCCFIPYIL 111
Score = 32 (11.3 bits), Expect = 6.3, Sum P(2) = 1.0
Identities = 5/10 (50%), Positives = 7/10 (70%), Frame = +2
Query: 41 LIGWLWYLFS 70
++ WLW FS
Sbjct: 21 IVTWLWGGFS 30
>gi|3724004|emb|CAA13049.1| (AJ228470) cytochrome b [Andricus grossulariae]
Length = 144
Frame 2 hits (HSPs): _____ ____
__________________________________________________
Database sequence: | | | | 144
0 50 100
Plus Strand HSPs:
Score = 51 (18.0 bits), Expect = 6.3, Sum P(2) = 1.0
Identities = 8/10 (80%), Positives = 10/10 (100%), Frame = +2
Query: 107 LLCCFLPHIL 136
LLCCF+P+IL
Sbjct: 102 LLCCFIPYIL 111
Score = 32 (11.3 bits), Expect = 6.3, Sum P(2) = 1.0
Identities = 5/10 (50%), Positives = 7/10 (70%), Frame = +2
Query: 41 LIGWLWYLFS 70
++ WLW FS
Sbjct: 21 IVTWLWGGFS 30
>gi|3724031|emb|CAA13028.1| (AJ228449) cytochrome b [Andricus seckondorffi]
Length = 144
Frame 2 hits (HSPs): _____ ____
__________________________________________________
Database sequence: | | | | 144
0 50 100
Plus Strand HSPs:
Score = 51 (18.0 bits), Expect = 6.3, Sum P(2) = 1.0
Identities = 8/10 (80%), Positives = 10/10 (100%), Frame = +2
Query: 107 LLCCFLPHIL 136
LLCCF+P+IL
Sbjct: 102 LLCCFIPYIL 111
Score = 32 (11.3 bits), Expect = 6.3, Sum P(2) = 1.0
Identities = 5/10 (50%), Positives = 7/10 (70%), Frame = +2
Query: 41 LIGWLWYLFS 70
++ WLW FS
Sbjct: 21 IVTWLWGGFS 30
>gi|6978837 ref|NP_037083.1| fibroblast growth factor 10
>gi|6015143|sp|P70492|FGFA_RAT FIBROBLAST GROWTH FACTOR-10
PRECURSOR (FGF-10) >gi|1517808|dbj|BAA11468.1| (D79215) FGF-10
[Rattus norvegicus]
Length = 215
Frame 3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 6.4, P = 1.0
Identities = 14/33 (42%), Positives = 19/33 (57%), Frame = +3
Query: 30 MCRFLLGGCGIFFPHLLAGCCNIFPHFFVVFSL 128
M +++L C FPHL GCC F F+V S+
Sbjct: 1 MWKWILTHCASAFPHL-PGCCCCFLLLFLVSSV 32
>gi|6851174|gb|AAF29455.1|AF130788_3 (AF130788) NADH dehydrogenase 3
[Schistosoma mansoni]
Length = 120
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 120
0 50 100
Plus Strand HSPs:
Score = 57 (20.1 bits), Expect = 6.9, P = 1.0
Identities = 10/30 (33%), Positives = 18/30 (60%), Frame = +1
Query: 55 VVSFFPTFWLAVVTFFPTSLLFSPSHFVSI 144
+V+FF T + +TF+ FS H++S+
Sbjct: 10 IVAFFFTLIIGSITFYVLGFSFSLDHYISL 39
>gi|2507023|sp|P44451|FDXI_HAEIN FORMATE DEHYDROGENASE, CYTOCHROME B556 SUBUNIT
(FORMATE DEHYDROGENASE GAMMA SUBUNIT) (FDH GAMMA SUBUNIT)
>gi|1572951|gb|AAC21686.1| (U32686) formate dehydrogenase, gamma
subunit (fdxI) [Haemophilus influenzae Rd]
Length = 238
Frame 1 hits (HSPs): _____
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | 238
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM03849: 25..195
DOMO DM07580: 197..256
Entrez Transmembrane region: POTENTIAL. 23..43
Entrez Transmembrane region: POTENTIAL. 60..80
Entrez Transmembrane region: POTENTIAL. 120..140
Entrez Transmembrane region: POTENTIAL. 155..175
PRODOM PD013589: 12..215
PRODOM PD110999: FDXI_HAEIN 217..237
__________________
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 7.5, P = 1.0
Identities = 10/23 (43%), Positives = 15/23 (65%), Frame = +1
Query: 37 VSYWVAVVSFFPTFWLAVVTFFP 105
+S+W+ V+ FF T + V FFP
Sbjct: 21 ISHWMLVICFFMTMFTGVAFFFP 43
>gi|7106313 ref|NP_032028.1|PFGF10 fibroblast growth factor 10
>gi|6015142|sp|O35565|FGFA_MOUSE FIBROBLAST GROWTH FACTOR-10
PRECURSOR (FGF-10) (KERATINOCYTE GROWTH FACTOR 2)
>gi|2541904|dbj|BAA22836.1| (D89080) fibroblast growth factor [Mus
musculus] >gi|4100127|gb|AAD00761.1| (U94517) fibroblast growth
factor 10/keratinocyte growth factor 2 [Mus musculus]
Length = 209
Frame 3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 209
0 50 100 150 200
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 7.9, P = 1.0
Identities = 14/32 (43%), Positives = 18/32 (56%), Frame = +3
Query: 30 MCRFLLGGCGIFFPHLLAGCCNIFPHFFVVFS 125
M +++L C FPHL GCC F F+V S
Sbjct: 1 MWKWILTHCASAFPHL-PGCCCCFLLLFLVSS 31
>gi|7271831|gb|AAF44642.1|AF224262_4 (AF224262) HoxA4 [Heterodontus francisci]
Length = 247
Frame -3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 247
0 50 100 150 200
Minus Strand HSPs:
Score = 62 (21.8 bits), Expect = 7.9, P = 1.0
Identities = 15/33 (45%), Positives = 20/33 (60%), Frame = -3
Query: 157 ATPLLC*QNVREKTTKKWGKMLQQP-AKRWGKKI 59
ATP LC QN + T +K G + ++P W KKI
Sbjct: 103 ATPALCSQNAKNPTAQK-GTLSKEPIVYPWMKKI 135
>gi|7287866|gb|AAF44904.1|AE003406_109 (AE003416) hypothetical protein
[Drosophila melanogaster]
Length = 355
Frame -2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 355
0 150 300
Minus Strand HSPs:
Score = 64 (22.5 bits), Expect = 8.0, P = 1.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Frame = -2
Query: 137 TKCEGENNKEVGKNVTTASQKVGKKDTTATQ*ETAH 30
TK NN+ +GK T +++ GK T++TQ AH
Sbjct: 55 TKATTSNNRTMGKTDITVTKRNGKYATSSTQKTPAH 90
>gi|1074093|pir||B64042 formate dehydrogenase (EC 1.2.1.2) O gamma chain -
Haemophilus influenzae (strain Rd KW20)
Length = 257
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 257
0 50 100 150 200 250
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 8.4, P = 1.0
Identities = 10/23 (43%), Positives = 15/23 (65%), Frame = +1
Query: 37 VSYWVAVVSFFPTFWLAVVTFFP 105
+S+W+ V+ FF T + V FFP
Sbjct: 40 ISHWMLVICFFMTMFTGVAFFFP 62
>gi|7508247|pir||T25133 hypothetical protein T22H2.4 - Caenorhabditis elegans
>gi|3880055|emb|CAB04751.1| (Z81595) T22H2.4 [Caenorhabditis
elegans]
Length = 91
Frame -3 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Minus Strand HSPs:
Score = 55 (19.4 bits), Expect = 9.0, P = 1.0
Identities = 18/43 (41%), Positives = 25/43 (58%), Frame = -3
Query: 142 C*QNVREKTTKKWGKMLQQPAKRWGKK--IPQPPNKKRHIISIL 17
C +NV++K KK GKM ++ AK+ KK P N K S+L
Sbjct: 26 CAKNVQKKC-KKCGKMCKKCAKKCLKKSKFSDPRNPKMLPTSLL 68
>gi|2293416|gb|AAC04470.1| (AF007800) MtlG [Pseudomonas fluorescens]
Length = 276
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 276
0 50 100 150 200 250
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 9.3, P = 1.0
Identities = 13/33 (39%), Positives = 21/33 (63%), Frame = +1
Query: 46 W-VAVVSFFPTFWLAVVTFFPTSL--LFSPSHFV 138
W +A++ FFP FW+ V+T F T + +P F+
Sbjct: 19 WAIAILIFFPIFWM-VLTSFKTEIDAFATPPQFI 51
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.373 0.172 0.697
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.360 0.162 0.682
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.357 0.156 0.607
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.343 0.148 0.501
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.341 0.142 0.449
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.333 0.141 0.474
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 75 75 10. 57 3 12 22 0.099 31
27 0.099 32
+2 0 75 74 10. 57 3 12 22 0.097 31
27 0.096 32
+1 0 76 75 10. 57 3 12 22 0.099 31
27 0.099 32
-1 0 76 75 10. 57 3 12 22 0.099 31
27 0.099 32
-2 0 75 75 10. 57 3 12 22 0.099 31
27 0.099 32
-3 0 75 75 10. 57 3 12 22 0.099 31
27 0.099 32
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 28
No. of states in DFA: 581 (57 KB)
Total size of DFA: 136 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 112.32u 1.17s 113.49t Elapsed: 00:00:59
Total cpu time: 112.35u 1.22s 113.57t Elapsed: 00:00:59
Start: Wed Feb 14 12:39:29 2001 End: Wed Feb 14 12:40:28 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000