BLASTP 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= PGN_0578 conserved hypothetical protein found in
conjugate transposon
(73 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
6,515,104 sequences; 2,222,278,849 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|60680754|ref|YP_210898.1| conserved hypothetical protein... 104 2e-21
gi|29345496|ref|NP_808999.1| conserved protein found in con... 104 2e-21
gi|167752577|ref|ZP_02424704.1| hypothetical protein ALIPUT... 96 1e-18
gi|53712642|ref|YP_098634.1| conserved protein found in con... 94 3e-18
gi|160890742|ref|ZP_02071745.1| hypothetical protein BACUNI... 87 3e-16
gi|60681267|ref|YP_211411.1| conserved hypothetical protein... 87 3e-16
gi|29347699|ref|NP_811202.1| conserved protein found in con... 85 2e-15
gi|160887680|ref|ZP_02068683.1| hypothetical protein BACUNI... 85 2e-15
gi|150003246|ref|YP_001297990.1| conserved protein found in... 83 6e-15
gi|29348005|ref|NP_811508.1| conserved protein found in con... 82 2e-14
gi|160882507|ref|ZP_02063510.1| hypothetical protein BACOVA... 82 2e-14
gi|150010444|ref|YP_001305187.1| conserved protein found in... 82 2e-14
gi|160890084|ref|ZP_02071087.1| hypothetical protein BACUNI... 81 2e-14
gi|154491644|ref|ZP_02031270.1| hypothetical protein PARMER... 81 2e-14
gi|150004135|ref|YP_001298879.1| conserved protein found in... 81 2e-14
gi|46242779|gb|AAS83484.1| TraN [Bacteroides fragilis] 81 3e-14
gi|53711407|ref|YP_097399.1| TraN [Bacteroides fragilis YCH... 81 3e-14
gi|10444278|gb|AAG17839.1|AF289050_14 TraN [Bacteroides the... 81 3e-14
gi|160889339|ref|ZP_02070342.1| hypothetical protein BACUNI... 80 6e-14
gi|29350188|ref|NP_813691.1| conserved protein found in con... 77 5e-13
gi|167763562|ref|ZP_02435689.1| hypothetical protein BACSTE... 76 6e-13
gi|34541142|ref|NP_905621.1| conjugative transposon protein... 74 3e-12
gi|150004683|ref|YP_001299427.1| conserved protein found in... 74 4e-12
gi|146300748|ref|YP_001195339.1| hypothetical protein Fjoh_... 60 4e-08
>gi|60680754|ref|YP_210898.1| conserved hypothetical protein found in conjugate transposon
[Bacteroides fragilis NCTC 9343]
gi|60492188|emb|CAH06953.1| conserved hypothetical protein found in conjugate transposon
[Bacteroides fragilis NCTC 9343]
Length = 302
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 55/63 (87%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITIGDLC 61
HNG+FYFHTQ KNSSNVPFDTDFI+FK+VDKKV KRTAIQE+V+ PVRS+NE++ IG
Sbjct: 190 HNGLFYFHTQTKNSSNVPFDTDFIRFKIVDKKVAKRTAIQETVIDPVRSYNEILVIGGKS 249
Query: 62 KIR 64
+R
Sbjct: 250 TVR 252
>gi|29345496|ref|NP_808999.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
gi|29337388|gb|AAO75193.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
Length = 302
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 55/63 (87%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITIGDLC 61
HNG+FYFHTQ KNSSNVPFDTDFI+FK+VDKKV KRTAIQE+V+ PVRS+NE++ IG
Sbjct: 190 HNGLFYFHTQTKNSSNVPFDTDFIRFKIVDKKVAKRTAIQETVIDPVRSYNEILVIGGKS 249
Query: 62 KIR 64
+R
Sbjct: 250 TVR 252
>gi|167752577|ref|ZP_02424704.1| hypothetical protein ALIPUT_00831 [Alistipes putredinis DSM 17216]
gi|167659646|gb|EDS03776.1| hypothetical protein ALIPUT_00831 [Alistipes putredinis DSM 17216]
Length = 311
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 51/63 (80%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITIGDLC 61
+NGM Y HTQ KNSSNVPFDTDFIKFK+VDKKV KRTAIQE+VL VRS+NEVI I
Sbjct: 199 YNGMLYVHTQTKNSSNVPFDTDFIKFKIVDKKVPKRTAIQETVLDAVRSYNEVIEITGKS 258
Query: 62 KIR 64
+R
Sbjct: 259 TVR 261
>gi|53712642|ref|YP_098634.1| conserved protein found in conjugate transposon TraN [Bacteroides
fragilis YCH46]
gi|52215507|dbj|BAD48100.1| conserved protein found in conjugate transposon TraN [Bacteroides
fragilis YCH46]
Length = 311
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 50/63 (79%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITIGDLC 61
+NGM Y HTQ KNSSNVPFDTDFI+FK+ DKKV KRTAIQE+VL VRS+NEVI I
Sbjct: 199 YNGMLYVHTQTKNSSNVPFDTDFIRFKITDKKVPKRTAIQETVLDAVRSYNEVIEIAGKS 258
Query: 62 KIR 64
+R
Sbjct: 259 TVR 261
>gi|160890742|ref|ZP_02071745.1| hypothetical protein BACUNI_03187 [Bacteroides uniformis ATCC 8492]
gi|156859741|gb|EDO53172.1| hypothetical protein BACUNI_03187 [Bacteroides uniformis ATCC 8492]
Length = 312
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 49/63 (77%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITIGDLC 61
HNG+FYFHT+ +N SNV F TDFI+FK+VDKKV KRTAIQE V+ PVRS+NEV+
Sbjct: 200 HNGLFYFHTETRNRSNVAFRTDFIRFKIVDKKVPKRTAIQERVIDPVRSYNEVLVTEGKS 259
Query: 62 KIR 64
+R
Sbjct: 260 DVR 262
>gi|60681267|ref|YP_211411.1| conserved hypothetical protein found in conjugate transposon
[Bacteroides fragilis NCTC 9343]
gi|60492701|emb|CAH07474.1| conserved hypothetical protein found in conjugate transposon
[Bacteroides fragilis NCTC 9343]
Length = 312
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 49/63 (77%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITIGDLC 61
HNG+FYFHT+ +N SNV F TDFI+FK+VDKKV KRTAIQE V+ PVRS+NEV+
Sbjct: 200 HNGLFYFHTETRNRSNVAFRTDFIRFKIVDKKVPKRTAIQERVIDPVRSYNEVLVTEGKS 259
Query: 62 KIR 64
+R
Sbjct: 260 DVR 262
>gi|29347699|ref|NP_811202.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
gi|29339600|gb|AAO77396.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
Length = 339
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITI 57
HNG+ YFH ++KN+SNVPF DF+ FKVVDKKV KRTAIQE V+ P+R+FN V +
Sbjct: 227 HNGLLYFHMELKNASNVPFSVDFVTFKVVDKKVAKRTAIQEQVIVPLRAFNYVTAV 282
>gi|160887680|ref|ZP_02068683.1| hypothetical protein BACUNI_00080 [Bacteroides uniformis ATCC 8492]
gi|156862811|gb|EDO56242.1| hypothetical protein BACUNI_00080 [Bacteroides uniformis ATCC 8492]
Length = 334
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 46/56 (82%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITI 57
HNG+ YFHT++KNSSNVPF D+I FKVVD+K+ KRTAIQE V+ P+R++N V +
Sbjct: 222 HNGLLYFHTELKNSSNVPFHVDYITFKVVDRKIAKRTAIQEQVIVPLRAYNYVTVV 277
>gi|150003246|ref|YP_001297990.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
gi|149931670|gb|ABR38368.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
Length = 304
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 46/56 (82%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITI 57
H + YFHT+VKN++NVPFD DF+ FK+VDKK+ KRTA+QE V+YP+R+FN V +
Sbjct: 192 HGELIYFHTEVKNATNVPFDVDFVTFKIVDKKIMKRTAMQEQVIYPLRAFNYVTRV 247
>gi|29348005|ref|NP_811508.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
gi|29339907|gb|AAO77702.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
Length = 309
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 45/56 (80%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITI 57
HN + YFHTQ++N +NVPFD DF+ FK+VDKK+ KRTA+QE V+YP+R+ N V +
Sbjct: 197 HNDLLYFHTQLRNETNVPFDVDFVTFKIVDKKIVKRTAMQEQVIYPLRACNYVTRV 252
>gi|160882507|ref|ZP_02063510.1| hypothetical protein BACOVA_00458 [Bacteroides ovatus ATCC 8483]
gi|156112088|gb|EDO13833.1| hypothetical protein BACOVA_00458 [Bacteroides ovatus ATCC 8483]
Length = 305
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 45/56 (80%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITI 57
HN + YFHTQ++N +NVPFD DF+ FK+VDKK+ KRTA+QE V+YP+R+ N V +
Sbjct: 193 HNDLLYFHTQLRNETNVPFDVDFVTFKIVDKKIVKRTAMQEQVIYPLRACNYVTRV 248
>gi|150010444|ref|YP_001305187.1| conserved protein found in conjugate transposon [Parabacteroides
distasonis ATCC 8503]
gi|149938868|gb|ABR45565.1| conserved protein found in conjugate transposon [Parabacteroides
distasonis ATCC 8503]
Length = 304
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 47/56 (83%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITI 57
H + YFHT+V+N+++VPFD DF+ FK+VDKK+ +RTA+QE V+YP+R+FN VI +
Sbjct: 192 HGDLLYFHTEVRNATHVPFDVDFVTFKIVDKKIVRRTAMQEQVIYPLRAFNYVIRV 247
>gi|160890084|ref|ZP_02071087.1| hypothetical protein BACUNI_02524 [Bacteroides uniformis ATCC 8492]
gi|156860472|gb|EDO53903.1| hypothetical protein BACUNI_02524 [Bacteroides uniformis ATCC 8492]
Length = 304
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 46/56 (82%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITI 57
H + YFHT+VKN+++VPFD DF+ FK+VDKK+ KRTA+QE V+YP+R+FN V +
Sbjct: 192 HGELLYFHTEVKNATHVPFDVDFVTFKIVDKKIVKRTAMQEQVIYPLRAFNYVTRV 247
>gi|154491644|ref|ZP_02031270.1| hypothetical protein PARMER_01255 [Parabacteroides merdae ATCC
43184]
gi|167764566|ref|ZP_02436687.1| hypothetical protein BACSTE_02956 [Bacteroides stercoris ATCC
43183]
gi|154088445|gb|EDN87490.1| hypothetical protein PARMER_01255 [Parabacteroides merdae ATCC
43184]
gi|167697235|gb|EDS13814.1| hypothetical protein BACSTE_02956 [Bacteroides stercoris ATCC
43183]
Length = 304
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 46/56 (82%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITI 57
H + YFHT+VKN+++VPFD DF+ FK+VDKK+ KRTA+QE V+YP+R+FN V +
Sbjct: 192 HGELLYFHTEVKNATHVPFDVDFVTFKIVDKKIVKRTAMQEQVIYPLRAFNYVTRV 247
>gi|150004135|ref|YP_001298879.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
gi|149932559|gb|ABR39257.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
Length = 304
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 46/56 (82%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITI 57
H + YFHT+VKN+++VPFD DF+ FK+VDKK+ KRTA+QE V+YP+R+FN V +
Sbjct: 192 HGELLYFHTEVKNATHVPFDVDFVTFKIVDKKIVKRTAMQEQVIYPLRAFNYVTRV 247
>gi|46242779|gb|AAS83484.1| TraN [Bacteroides fragilis]
Length = 328
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 43/51 (84%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFN 52
HNG+ YFHT++KN SNVPFD D+I +K+VDKKV KRTA+QE ++ P+R+ N
Sbjct: 216 HNGLLYFHTEIKNQSNVPFDVDYITWKIVDKKVAKRTAVQEQIILPLRAQN 266
>gi|53711407|ref|YP_097399.1| TraN [Bacteroides fragilis YCH46]
gi|154490895|ref|ZP_02030836.1| hypothetical protein PARMER_00812 [Parabacteroides merdae ATCC
43184]
gi|167762721|ref|ZP_02434848.1| hypothetical protein BACSTE_01079 [Bacteroides stercoris ATCC
43183]
gi|52214272|dbj|BAD46865.1| TraN [Bacteroides fragilis YCH46]
gi|154088643|gb|EDN87687.1| hypothetical protein PARMER_00812 [Parabacteroides merdae ATCC
43184]
gi|167699061|gb|EDS15640.1| hypothetical protein BACSTE_01079 [Bacteroides stercoris ATCC
43183]
Length = 328
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 43/51 (84%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFN 52
HNG+ YFHT++KN SNVPFD D+I +K+VDKKV KRTA+QE ++ P+R+ N
Sbjct: 216 HNGLLYFHTEIKNQSNVPFDVDYITWKIVDKKVAKRTAVQEQIILPLRAQN 266
>gi|10444278|gb|AAG17839.1|AF289050_14 TraN [Bacteroides thetaiotaomicron]
Length = 329
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 43/51 (84%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFN 52
HNG+ YFHT++KN SNVPFD D+I +K+VDKKV KRTA+QE ++ P+R+ N
Sbjct: 217 HNGLLYFHTEIKNQSNVPFDVDYITWKIVDKKVAKRTAVQEQIILPLRAQN 267
>gi|160889339|ref|ZP_02070342.1| hypothetical protein BACUNI_01762 [Bacteroides uniformis ATCC 8492]
gi|156861346|gb|EDO54777.1| hypothetical protein BACUNI_01762 [Bacteroides uniformis ATCC 8492]
Length = 328
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 43/51 (84%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFN 52
HNG+ YFHT+++N SNVPFD D+I +K+VDKKV KRTA+QE ++ P+R+ N
Sbjct: 216 HNGLLYFHTEIRNQSNVPFDVDYITWKIVDKKVAKRTAVQEQIILPLRAQN 266
>gi|29350188|ref|NP_813691.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
gi|29342100|gb|AAO79885.1| conserved protein found in conjugate transposon [Bacteroides
thetaiotaomicron VPI-5482]
Length = 299
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%)
Query: 1 MHNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITIGDL 60
++N + Y HT ++NSS++ FD D+I+FKVVDKKV KRTA+QE+ + PVR++N +IT+
Sbjct: 186 INNDLLYLHTSLRNSSDISFDIDYIRFKVVDKKVAKRTAMQENFIEPVRTYNRLITVDGK 245
Query: 61 CKIR 64
+R
Sbjct: 246 ATVR 249
>gi|167763562|ref|ZP_02435689.1| hypothetical protein BACSTE_01937 [Bacteroides stercoris ATCC
43183]
gi|167698856|gb|EDS15435.1| hypothetical protein BACSTE_01937 [Bacteroides stercoris ATCC
43183]
Length = 299
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 49/64 (76%)
Query: 1 MHNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITIGDL 60
++N + Y HT ++NSS++ FD D+I+FKVVDKKV KRTA+QE+ + PVR++N +IT+
Sbjct: 186 INNDLLYLHTSLRNSSDISFDIDYIRFKVVDKKVAKRTAMQENFIEPVRTYNRLITVDGK 245
Query: 61 CKIR 64
+R
Sbjct: 246 ATVR 249
>gi|34541142|ref|NP_905621.1| conjugative transposon protein TraN [Porphyromonas gingivalis W83]
gi|34397458|gb|AAQ66520.1| conjugative transposon protein TraN [Porphyromonas gingivalis W83]
Length = 341
Score = 73.9 bits (180), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/56 (57%), Positives = 42/56 (75%)
Query: 2 HNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITI 57
HNG+ +FH ++N +N+P DFI FKVVDKKV KRTAIQE VL P+R+ ++V I
Sbjct: 228 HNGLLFFHVVIENQTNIPCSVDFITFKVVDKKVAKRTAIQEQVLQPLRACHQVAWI 283
>gi|150004683|ref|YP_001299427.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
gi|149933107|gb|ABR39805.1| conserved protein found in conjugate transposon [Bacteroides
vulgatus ATCC 8482]
Length = 299
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 48/64 (75%)
Query: 1 MHNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSFNEVITIGDL 60
++N + Y HT ++NSS++ FD D+I+FK++DKKV KRTA+QE+ + PVR++N + T+
Sbjct: 186 INNDLLYLHTSLRNSSDISFDIDYIRFKIIDKKVAKRTAMQENFIEPVRTYNRLTTVDGK 245
Query: 61 CKIR 64
+R
Sbjct: 246 ATVR 249
>gi|146300748|ref|YP_001195339.1| hypothetical protein Fjoh_2999 [Flavobacterium johnsoniae UW101]
gi|146155166|gb|ABQ06020.1| hypothetical protein Fjoh_2999 [Flavobacterium johnsoniae UW101]
Length = 286
Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 36/51 (70%)
Query: 1 MHNGMFYFHTQVKNSSNVPFDTDFIKFKVVDKKVTKRTAIQESVLYPVRSF 51
+H+G +YFH + NS+NVP+ DF+ FK+ D+ +RTA+Q+ + P+R +
Sbjct: 176 VHDGKYYFHIALYNSTNVPYRIDFLNFKIADRNKARRTAVQQKAISPLRVY 226
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: May 10, 2008 4:54 AM
Number of letters in database: 884,634,002
Number of sequences in database: 2,620,852
Database: /apps/blastdb/nr.01
Posted date: May 10, 2008 4:52 AM
Number of letters in database: 976,814,986
Number of sequences in database: 2,761,530
Database: /apps/blastdb/nr.02
Posted date: May 10, 2008 4:46 AM
Number of letters in database: 360,829,861
Number of sequences in database: 1,132,722
Lambda K H
0.326 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 294,952,884
Number of Sequences: 6515104
Number of extensions: 8127923
Number of successful extensions: 21374
Number of sequences better than 1.0e-04: 24
Number of HSP's better than 0.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21350
Number of HSP's gapped (non-prelim): 24
length of query: 73
length of database: 2,222,278,849
effective HSP length: 44
effective length of query: 29
effective length of database: 1,935,614,273
effective search space: 56132813917
effective search space used: 56132813917
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 116 (49.3 bits)