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| Status |
Public on Mar 12, 2005 |
| Title |
MRS pH 4.5 (lactate)-2 (dye swap) |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source Name |
L. acidophilus NCK1398 (NCFM::lacL)
|
| Organism(s) |
Lactobacillus acidophilus |
| Extracted molecule |
total RNA |
| |
|
| Channel 2 |
| Source Name |
L. acidophilus NCK1686 (NCFM::HPK)
|
| Organism(s) |
Lactobacillus acidophilus |
| Extracted molecule |
total RNA |
| |
|
| |
| Description |
Early log phase cultures wt (NCK1398, control, Cy5) vs. test (mutant, NCK1686, Cy3) were exposed to MRS pH 4.5 (adjusted with lactate) for 30 min.
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| |
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| Submission date |
Nov 12, 2004 |
| Contact name |
Todd Robert Klaenhammer |
| E-mail(s) |
maperil@ncsu.edu, trk@ncsu.edu, yjgoh@ncsu.edu
|
| Phone |
919-515-2972
|
| Fax |
919 513 0014
|
| Organization name |
North Carolina State University
|
| Department |
Department of Food, Bioprocessing, and Nutrition Sciences
|
| Street address |
|
| City |
Raleigh |
| State/province |
NC |
| ZIP/Postal code |
27695 |
| Country |
USA |
| |
|
| Platform ID |
GPL1401 |
| Series (1) |
| GSE1976 |
Acid sensitivity and opp transport regulation in L. acidophilus |
|
| Data table header descriptions |
| ID_REF |
|
| RATIO |
(Cy5 Normalized - Background) / (Cy3 Normalized -Background) |
| VALUE |
log ratio (log2 of RATIO) |
| CH1_RAW |
raw signal output for channel 1 |
| CH1_BKD |
background signal output for channel 1 |
| CH1_SD |
standard deviation calculated for the mean signal for channel 1 |
| CH1_BKD_SD |
standard deviation for the mean background signal for channel 1 |
| CH2_RAW |
raw signal output for channel 2 |
| CH2_BKD |
background signal output for channel 2 |
| CH2_SD |
standard deviation calculated for the mean signal for channel 2 |
| CH2_BKD_SD |
standard deviation for the mean background signal for channel 2 |
| Data table |
| ID_REF |
RATIO |
VALUE |
CH1_RAW |
CH1_BKD |
CH1_SD |
CH1_BKD_SD |
CH2_RAW |
CH2_BKD |
CH2_SD |
CH2_BKD_SD |
| 1 |
0.891713395 |
-0.165348005 |
662.263916 |
183.458328 |
321.736938 |
219.623657 |
706.492554 |
203.479172 |
463.490021 |
228.825867 |
| 2 |
0.668831027 |
-0.58028632 |
790.133362 |
485.0625 |
457.820435 |
928.087097 |
496.616821 |
256.229156 |
230.062164 |
303.74472 |
| 3 |
0.430666804 |
-1.215355971 |
1440.165527 |
239.083328 |
5453.548828 |
319.754425 |
807.721924 |
198.3125 |
1343.915894 |
210.636032 |
| 4 |
0.962743381 |
-0.054776795 |
1045.035156 |
275.854156 |
839.141663 |
671.306946 |
1305.22876 |
432.791656 |
671.933167 |
534.764038 |
| 5 |
0.766091066 |
-0.384412198 |
1118.267212 |
324.3125 |
2083.747559 |
500.427063 |
1021.715698 |
305.125 |
709.944214 |
244.101883 |
| 6 |
-2.588973761 |
|
1193.834595 |
1431.270874 |
860.800476 |
5148.263672 |
1272.40625 |
548.1875 |
826.32782 |
904.293274 |
| 7 |
1.063434044 |
0.088730557 |
1430.083618 |
90.666664 |
811.405151 |
109.091866 |
1864.655396 |
186.541672 |
1005.532166 |
192.204453 |
| 8 |
1.347830659 |
0.430639248 |
1062.485962 |
133.354172 |
681.744873 |
237.81044 |
1661.30957 |
185.916672 |
944.067932 |
211.359909 |
| 9 |
1.128287956 |
0.174135312 |
1167.700684 |
144.833328 |
749.288025 |
169.918549 |
1583.922485 |
224.25 |
854.053589 |
227.667221 |
| 10 |
1.039931387 |
0.056488345 |
850.89856 |
246.8125 |
413.353485 |
271.883881 |
1177.280518 |
437.166656 |
486.145294 |
526.320068 |
| 11 |
1.21590106 |
0.282025839 |
723.883057 |
188.083328 |
416.216187 |
272.835449 |
1002.947388 |
235.416672 |
506.091217 |
217.52063 |
| 12 |
0.795086346 |
-0.330816549 |
665.284912 |
157.8125 |
701.141418 |
179.060394 |
696.567383 |
221.208328 |
310.658051 |
197.530823 |
| 13 |
0.876425163 |
-0.190297188 |
1798.928345 |
122.5625 |
1010.654358 |
201.737976 |
1920.155884 |
189.229172 |
1020.659302 |
211.588943 |
| 14 |
1.244104753 |
0.315107965 |
1300.496338 |
168.770828 |
736.168274 |
210.357071 |
1865.817261 |
207.020828 |
1026.27478 |
252.781754 |
| 15 |
0.885650887 |
-0.175189977 |
1656.35022 |
237.520828 |
2112.515625 |
356.872162 |
1739.596313 |
259.166656 |
1412.010742 |
432.054382 |
| 16 |
1.376287692 |
0.460782075 |
4509.095703 |
308.354156 |
2494.751221 |
407.529755 |
7440.761719 |
629.458313 |
3885.656494 |
891.61377 |
| 17 |
1.310327037 |
0.38992693 |
4183.516602 |
143.729172 |
3629.76123 |
204.669815 |
6435.535645 |
199.145828 |
4262.726563 |
239.374985 |
| 18 |
1.588516752 |
0.667680304 |
1514.417358 |
651.375 |
712.849182 |
2124.851074 |
1912.943481 |
297.770844 |
1088.70752 |
310.875854 |
| 19 |
1.31377619 |
0.393719524 |
12889.25195 |
145.041672 |
6600.966797 |
164.048126 |
19896.12305 |
170.5625 |
11950.71484 |
158.230362 |
| 20 |
1.692752687 |
0.75937121 |
9306.083984 |
120.645836 |
5548.997559 |
192.139191 |
18500.0625 |
181.625 |
10572.17871 |
188.269348 |
Total number of rows: 6906
Table truncated, full table size 779 Kbytes.
| Supplementary data files not provided |
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