NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Statistics

Collaborators
EBI
NCBI
UCSC
WTSI

Contact Us
GenComp eMail

Genome Displays
Ensembl
Genome Browser
Map Viewer
VEGA

Related Resources
Entrez Gene
HomoloGene
RefSeq
UniGene

Report for CCDS ID CCDS37585

CCDS Status Species Chrom. Gene NCBI Builds Links
37585.1 Public Mus musculus 17 Btnl2 37.1 - 37.1 CCDS HistoryEntrezGene:547431Re-query CCDS DB by GeneID:547431

Sequence IDs included in CCDS 37585.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI,WTSI ENSMUST00000025198 ENSMUSP00000025198 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025198Link to Ensembl Protein Viewer:ENSMUSP00000025198Re-query CCDS DB by Nucleotide ID:ENSMUST00000025198Re-query CCDS DB by Protein ID:ENSMUSP00000025198
Original member Current member EBI,WTSI OTTMUST00000047932 OTTMUSP00000021847 Accepted alive Link to Vega Transcript Viewer:OTTMUST00000047932Link to Vega Protein Viewer:OTTMUSP00000021847Re-query CCDS DB by Nucleotide ID:OTTMUST00000047932Re-query CCDS DB by Protein ID:OTTMUSP00000021847
Current member NCBI NM_079835.2 NP_524574.1 Accepted alive Link to Nucleotide Sequence:NM_079835.2Link to Protein Sequence:NP_524574.1Re-query CCDS DB by Nucleotide ID:NM_079835Re-query CCDS DB by Protein ID:NP_524574

Chromosomal Locations for CCDS 37585.1

On '+' strand of Chromosome 17 (NC_000083.5)
Genome Browser links: Link to NCBI Map Viewer on chromosome 17Link to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17

Chromosome Start Stop Links
17 34493167 34493245 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 34494897 34495244 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 34497867 34498148 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 34499604 34499624 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 34500137 34500484 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 34502128 34502406 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 34503329 34503430 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17
17 34505588 34505673 Link to NCBI Entrez NucleotideLink to NCBI Map ViewerLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17Link to Vega Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternate exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGTGGATTGCCCACGGTATAGTCTATCTGGCGTGGCTGCCTCCTTCCTCTTCGTCCTGCTGACTATAA
AGCACCCAGATGACTTCAGAGTGGTCGGTCCTAACCTCCCAATCTTGGCTAAAGTCGGGGAAGATGCCCT
GCTAACGTGTCAGCTCCTCCCCAAGAGGACCACGGCACACATGGAGGTGAGGTGGTACCGCTCCGACCCT
GACATGCCAGTGATTATGTACCGGGATGGAGCTGAGGTGACTGGGCTACCGATGGAGGGGTACGGAGGCC
GGGCAGAGTGGATGGAGGACAGCACTGAAGAGGGCAGTGTGGCTCTGAAGATTCGCCAGGTCCAGCCAAG
TGACGATGGCCAGTACTGGTGCCGCTTCCAGGAGGGGGACTACTGGAGAGAGACAAGCGTGCTACTCCAA
GTGGCTGCTCTAGGATCTTCCCCAAATATCCATGTGGAGGGACTCGGAGAAGGAGAGGTCCAGCTTGTAT
GCACGTCCCGAGGCTGGTTCCCTGAGCCTGAGGTGCACTGGGAAGGCATCTGGGGAGAAAAGTTGATGAG
TTTCTCTGAGAATCATGTGCCAGGTGAAGATGGGCTATTCTATGTGGAAGACACACTGATGGTCAGGAAT
GACAGTGTAGAGACCATTTCCTGCTTCATCTACAGCCATGGCCTCAGAGAGACCCAGGAGGCCACCATCG
CTCTGTCAGAGAGGCTCCAGACCGAACTGGCTTCCGTTAGCGTAATCGGACATTCCCAGCCCAGCCCTGT
TCAAGTCGGAGAGAACATAGAATTAACTTGTCACCTCTCACCTCAAACGGATGCTCAGAACTTAGAGGTG
AGGTGGCTCCGATCCCGCTATTACCCTGCAGTCCACGTGTATGCAAATGGCACCCACGTGGCTGGAGAGC
AGATGGTAGAATACAAAGGGAGGACTTCATTGGTGACTGATGCCATCCACGAGGGAAAACTGACCCTGCA
AATTCACAATGCCAGAACTTCGGATGAAGGGCAGTACCGGTGCCTTTTTGGAAAAGATGGTGTCTACCAG
GAGGCCCGTGTGGATGTGCAGGTGATGGCGGTGGGTTCCACCCCACGGATCACCAGGGAGGTCTTGAAAG
ATGGAGGCATGCAGCTGAGGTGTACGTCTGATGGGTGGTTCCCACGGCCCCATGTGCAGTGGAGGGACAG
AGATGGAAAGACAATGCCATCGTTTTCCGAGGCCTTTCAGCAAGGGAGCCAGGAGCTGTTCCAGGTGGAG
ACACTTCTGCTGGTCACAAACGGCTCCATGGTGAATGTGACCTGCTCCATCAGCCTCCCTCTGGGCCAGG
AGAAAACAGCCCGTTTCCCTCTCTCAGACTCCAAGATAGCTTTGCTATGGATGACCCTGCCTGTTGTGGT
GCTGCCTCTGGCCATGGCTATCGACCTGATCAAGGTGAAACGGTGGCGGCGGACCAATGAACAAACACAC
AGCAGCAATCAGGAAAATAACAAGAATGACGAAAACCACAGGCGGCGACTTCCTTCTGATGAGAGGCTCA
GATGA

Translation (514 aa):
MVDCPRYSLSGVAASFLFVLLTIKHPDDFRVVGPNLPILAKVGEDALLTCQLLPKRTTAHMEVRWYRSDP
DMPVIMYRDGAEVTGLPMEGYGGRAEWMEDSTEEGSVALKIRQVQPSDDGQYWCRFQEGDYWRETSVLLQ
VAALGSSPNIHVEGLGEGEVQLVCTSRGWFPEPEVHWEGIWGEKLMSFSENHVPGEDGLFYVEDTLMVRN
DSVETISCFIYSHGLRETQEATIALSERLQTELASVSVIGHSQPSPVQVGENIELTCHLSPQTDAQNLEV
RWLRSRYYPAVHVYANGTHVAGEQMVEYKGRTSLVTDAIHEGKLTLQIHNARTSDEGQYRCLFGKDGVYQ
EARVDVQVMAVGSTPRITREVLKDGGMQLRCTSDGWFPRPHVQWRDRDGKTMPSFSEAFQQGSQELFQVE
TLLLVTNGSMVNVTCSISLPLGQEKTARFPLSDSKIALLWMTLPVVVLPLAMAIDLIKVKRWRRTNEQTH
SSNQENNKNDENHRRRLPSDERLR


Links Key
 Links to:   History report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Map Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH