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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs11772371          
refSNP ID: rs11772371
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:120/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_198990.3:c.-16-2871C>T
NT_007933.14:g.27955686G>A
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss17191966 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs11772371 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss17191966CSHL-HAPMAP|CSHL-HuAA-200402.chr7.NT_007933.13_27954828fwd/TA/Gctgggtgacagtgagactctgtctcaagggaaaaaaaaaaaaagcaaggaaggtttgtga02/17/0403/04/04120Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs11772371|allelePos=501|totalLen=934|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=120
 ACatatacat atgtatgtat atatatacac atatatatCA TAATTCTACC AAATACATTA
 ATAAATGTTT GGCTCATTGT TTTAAACAAT GAAGGGATAA GGGAGAAAGG AAAAAAGGAC
 ACTTTGATTC AAAGACCACA AAGACAACAT CAAAATAGGG TTTTGAACAA CATCTAGTGG
 TCTAATGTAG CTAGGACATA AAAAGCAAGG AAGggccagg cgcagtggct caacgcctat
 aattccagca cttcaggagg ccaaggcaga tgactcacct gagacaagga gttcaagatt
 ggcctggcca agatggtgaa accctgtctc tactaaaaat acaaaaagta gccgggcgtg
 gtggacctgt gcctgcaatc ccagctactc aggaggctga ggcaggagaa tcacttggac
 cctagaggca gaggttgcag tgagccgaga tcgcgctgtt gcactccagc ctgggtgaca
 gtgagactct gtctcaaggg
 R
 aaaaaaaaaa aaaGCAAGGA AGGTTTGTGA AAGTCGAGAC TATAGAGGGT TAAAAGACTG
 GACAGTAAAG ATGGGACTAG ATTGTGAGCC TGGACTCCCT CTAAGGAGGT TAGGCTACAC
 TGCAAGCAAT GGGGAAACAC TGAACACACT TAAAAGGCTG TGTACTTAAG ggctggacac
 agtggctcat gcatgtaatc acagccattt gggaggccga ggcgagtgga tcacgaggtc
 aggagttcga gactagcctg gccaacacag tgaaggctcg tctctactaa aaattcaaaa
 attagtcggg cgtggtggcg cgtgcctgca gtcacagcaa cttgggagcc tgaggcagga
 gaattgcttg aacccaggag gcggaggttg cGGAGACTCC GTCTAAAAAG AAAATGATGT
 ACTTAGGGAA GAC

  GeneView back to top
GeneView via analysis of contig annotation: NAPEPLD N-acyl phosphatidylethanolamine phospholipase D
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_007933->NM_198990
function
HuRefNW_001839071->NM_198990
function
CeleraNW_923640->NM_198990
function
CRA_TCAGchr7v2NT_079596->NM_198990
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_007933->NM_198990->NP_94534127955686reverseintron
HuRefNW_001839071->NM_198990->NP_94534128519326forwardintron
CeleraNW_923640->NM_198990->NP_945341338771reverseintron
CRA_TCAGchr7v2NT_079596->NM_198990->NP_9453412168044reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs11772371 maps exactly once on NCBI human chromosome 7
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
7NW_001839071.22851932697135188minusCalt_assembly_8HuRefHuRefview500
7NW_923640.133877197580020plusGalt_assembly_1CeleraCeleraview500
7NT_079596.22168044102132476plusGalt_assembly_2CRA_TCAGchr7v2CRA_TCAGchr7v2view500
7NT_007933.1427955686102559346plusGref_assemblyreferencereferenceview500

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_007933
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .