Reference SNP(refSNP) Cluster Report: rs427832

Reference SNP(refSNP) Cluster Report: rs427832

refSNP ID: rs427832
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	80/129
Map to Genome Build:	36.3
Citation:	PubMed

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	G
Clinical Association:	unknown

HGVS Names

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss44385391 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs427832 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss566699	SC_JCM\|AC025155.9_22995	rev/B	C/T	ccagaagaaagccaccagtcaggacgaatc	gcatctgtgggttcttgtgtcacatggcgc	07/12/00	10/10/03	80	Genomic	unknown
ss876268	KWOK\|OVLP-000804-30597	fwd/T	A/G	gcaccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	09/01/00	10/10/03	86	Genomic	99 %
ss1909909	KWOK\|OVLP-000925-485015	fwd/T	A/G	gcaccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	10/06/00	10/10/03	87	Genomic	99 %
ss2181949	TSC-CSHL\|TSC0557614	fwd/T	A/G	gcaccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	10/19/00	04/07/04	88	Genomic	95 %
ss24295210	PERLEGEN\|afd2721750	fwd/T	A/G	gcgccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	08/10/04	09/13/04	123	Genomic	unknown
ss44385391	ABI\|hCV950073	fwd/T	A/G	gcgccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	07/18/05	11/03/06	126	Genomic	unknown
ss66011960	AFFY\|SNP_A-1715954	fwd/T	A/G	atgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttct	10/26/06	10/26/06	127	Genomic	unknown
ss66747647	ILLUMINA\|HumanHap300v1.1_rs427832	fwd/B	A/G	gcaccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	11/09/06	11/09/06	127	Genomic	unknown
ss67323293	ILLUMINA\|HumanHap550v1.1_rs427832	fwd/T	A/G	gcaccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	11/14/06	11/14/06	127	Genomic	unknown
ss67726415	ILLUMINA\|HumanHap650Yv1.0_rs427832	fwd/T	A/G	gcaccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	11/14/06	11/14/06	127	Genomic	unknown
ss70798127	ILLUMINA\|HumanHap550v3.0__rs427832	rev/B	C/T	ccagaagaaagccaccagtcaggacgaatc	gcatctgtgggttcttgtgtcacatggcgc	04/20/07	03/30/08	130	Genomic	unknown
ss71376564	ILLUMINA\|HumanHap650Yv3.0_rs427832	fwd/T	A/G	gcgccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	04/23/07	04/23/07	127	Genomic	unknown
ss75704872	ILLUMINA\|ILMN_Human_1M_rs427832	fwd/T	A/G	gcgccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	08/28/07	08/29/07	129	Genomic	unknown
ss79178221	ILLUMINA\|HumanHap300v2.0_rs427832	fwd/T	A/G	gcgccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	04/18/07	11/18/07	130	Genomic	unknown
ss82739997	HGSV\|Cor18555_SNV_20070510.chr3_149949061	fwd/T	A/G	gcgccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	11/27/07	12/03/07	130	Genomic	unknown
ss83395648	HGSV\|Cor19240_SNV_20070510.chr3_149949061	fwd/T	A/G	gcgccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	11/30/07	12/04/07	130	Genomic	unknown
ss83451746	KRIBB_YJKIM\|KHS464853	fwd/T	A/G	gcgccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	12/04/07	12/05/07	130	Genomic	unknown
ss106305509	BGI\|BGI_rs427832	fwd/T	A/G	gcaccatgtgacacaagaacccacagatgc	gattcgtcctgactggtggctttcttctgg	09/13/08	09/15/08	130	Genomic	unknown

Fasta sequence (Legend)

 AGATGAGAAA TAGGGATCCT GGCTCAACCT CCCAGTGAGT TGGGATTTAT CTCATGGAAC
 TTTTTCCCAA GCTTGATGAA GTTCTGCTGT GCCATATGGA CATGTACAGT TGCTAAATGA
 TAATTTTCCA AAAATAAGCT TCAATTCTCC AAAATGGCAG ATAGAAAGCA GCTGGTGTTA
 CTCAACAGAG ATAAGCCCTC CTAGAGCTCA CCACAGAGAG GAGAGCATCA TGTCTGCAGA
 TGCCACAGCA GATCTGCTGA GAATCAGCCA GCGCCATGTG ACACAAGAAC CCACAGATGC
 R
 GATTCGTCCT GACTGGTGGC TTTCTTCTGG CCATTGCTGT TACAGAGAAG TTTCTAAGCA
 GTACTCAATG CACACAAAAC TAAGTAGAGG CTATATAGGC AATTCTTCAA ATAAGCAATC
 ATTATTCTCA GTAATTCTTG TAGTAAGTGG ATGGTAGGAG GAAAAAAAAA ATACCTTTCC
 ACTGATGATA TCACCTTTAT AGCTATTTCT TGAGTCTCCC TATCTTTTCC ACCTTCTTCA
 AGAAATAGTC CCCTATTACA ATTTGCATGC CCACTCTTGC TGCAGAATTT GTATAGGGGC

GeneView

GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs427832 maps exactly once on NCBI human chromosome 3

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
3	NW_001838884.2	45590274	145838757	minus	C	alt_assembly_8	HuRef	HuRef	view	300
3	NW_921807.1	55062401	146876731	plus	A	alt_assembly_1	Celera	Celera	view	300
3	NT_005612.15	54961509	149949053	plus	G	ref_assembly	reference	reference	view	300

NCBI Resource Links

Submitter-Referenced
GenBank
NC_000003.6 AC024991 AC067729.10 AC067729.12

dbSNP Blast Analysis

Population Diversity

	Sample Ascertainment				Genotype Detail							Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A	A/A	A/G	G	G/G	N	HWP	A	G	N
ss2181949	AfAm	African American	40	IG		0.250	0.500		0.250		1.000	0.500	0.500

	Caucasian	European	38	IG		0.316	0.368		0.316		0.254	0.500	0.500

	Asian	Asian	40	IG		0.600	0.350		0.050		1.000	0.775	0.225

	CEPH	European	54	IG		0.370	0.481		0.148		1.000	0.611	0.389

	PDpanel	Global	46	IG		0.217	0.522		0.261		1.000	0.478	0.522

	CEPH		184	AF								0.500	0.500

	CHMJ	Asian	74	IG	0.716			0.270		0.014		0.716	0.270	0.014

ss24295210	AFD_EUR_PANEL	European	48	IG		0.292	0.458		0.250		0.752	0.521	0.479

	AFD_AFR_PANEL	African American	46	IG		0.217	0.391		0.391		0.371	0.413	0.587

	AFD_CHN_PANEL	Asian	48	IG		0.583	0.375		0.042		1.000	0.771	0.229

ss44385391	HapMap-CEU	European	120	IG		0.333	0.483		0.183		1.000	0.575	0.425

	HapMap-HCB	Asian	90	IG		0.489	0.444		0.067		0.343	0.711	0.289

	HapMap-JPT	Asian	88	IG		0.568	0.364		0.068		1.000	0.750	0.250

	HapMap-YRI	Sub-Saharan African	120	IG		0.117	0.500		0.383		0.371	0.367	0.633

	AoD_African_American		90	AF								0.440	0.560

	AoD_Caucasian		92	AF								0.520	0.480

	AoD_Chinese		90	AF								0.790	0.210

	AoD_Japanese		90	AF								0.780	0.220