Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss5587478	EGP_SNPS|TXN-009444		fwd/T	C/G	aatgatgaggatactttctgagaaatgtta	gcaattttgttgtgcacacatagagtgtac	09/29/02	04/07/04	108	Genomic			unknown
ss15706024	SC_SNP|NT_008470.16_14672378		rev/B	C/G	gtacactctatgtgtgcacaacaaaattgc	taacatttctcagaaagtatcctcatcatt	11/17/03	10/25/06	120	Genomic			unknown
ss24209506	PERLEGEN|afd4403416		rev/B	C/G	gtacactctatgtgtgcacaacaaaattgc	taacatttctcagaaagtatcctcatcatt	08/10/04	09/13/04	123	Genomic			unknown
ss43453528	ABI|hCV31958314		rev/	C/G	gtacactctatgtgtgcacaacaaaattgc	taacatttctcagaaagtatcctcatcatt	07/18/05	07/18/05	126	Genomic			unknown
ss69300083	PERLEGEN|PGP04403416		rev/	C/G	gtacactctatgtgtgcacaacaaaattgc	taacatttctcagaaagtatcctcatcatt	01/30/07	03/31/08	127	Genomic			unknown

Fasta sequence   (Legend)

 AGCAACTTGA TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTGAGATG GAGTTCACTC
 TGTCACCTGG GGTGGAGTGC AGTGGCATGA TCTCGGCTCA CTGCAACCTC TGCCTCCCGG
 GTTTAAGCAA TCCTCTGTCT CAGCCTCCTG GGTAGCTGGG ATTACAGGCA TGCACCACCA
 TGCCTGGCTA ATTTTGTATT TTTACAAAAT TAAAACCCCA GTAGAGACGG GGTTTCACCA
 TGTTGGTCAG GCTGGTCTCG AACTCCTGAC TTCAGGTGAT CCACCCACCT CGGCCTCCCA
 AAGTGCTGGG ATTATCCACC ACGCCCGGCC TTGATTTTTA TTTGAAAGCA ATAATAGGTG
 CCAGATGCCA TGATAAGCCC TTTGCATGCA CTATGTCATT TAATCCTCAC GATAACTATA
 CGAGTATTTT TTATTAGCAC CCTCATTGAA CAGGTAATGG CACTGCAGCA CAGAAGGTAA
 AGTCAGTCTC TTGAGGCAGA CCAATGCACC ATACTGTACT GAGGACAGGT CTTCTTACTG
 CCTTTAGGAA GTACAGTCAT GCATCACTTA ATGATGAGGA TACTTTCTGA GAAATGTTA
 S
 GCAATTTTGT TGTGCACACA TAGAGTGTAC TTACACAACC TAGATGGCAT AGCCTCCTGT
 ACACCTAGGC TATGTGGTAA AGCCTGTTGC TCCTAGGCCA CAAACAGGTA AGGCATGTTA
 CTGTACTGAA TACTGTAGGC AGTTATAACA CAACAGTAAG TATTTGTGTA TCTAAACATA
 GAAAAGGTAT GGTGAAAACA TGATATGAAA GATTAAAAAA TGGTATGCCT TTATAAGGTA
 CTTGCCATAA ACGGGACTTG CAGGACTGAG AGGTGCTCTG GGCGAGTCAG TGAGTGGGTG
 GTGAGTGAAT GTGAAGGCCT AGAACCTGTA GACGTTATAA ACACTGTATG CTTACAAATT
 TTATTTTTAA AATTTCTTTT TTCAGCAATA AATTTATTGT AACTTTTTTA CTTTATAGTT
 TTTTTATTTT TTTAACTCTT TAACTCTTGT AATAACACTT AGCTTAAAAC ACGAATGCAT
 TGTACAGCTC TACAAAAATA TTTTCTTTAT ATCCTTAGTC TATAAGCTTT TTTTAAAAAG
 ACTTTTTAAA CTTTTTGTTA CAAACTAAGA TTCAAACACA TACATTAGCC TAGACCAACA
 CAGGGTCAGG ATCATCAGTA TCACTGTCTC CCATCCCCAC ATCTTGTCTC ACAGAAAGGT
 CTTCAGGGAC AGTAACATGC ATGGACCTTT CATCTCCTAT GATAACAGTG CCTTCTCCTG
 GAATGCTTCC TGAAGGGCCT GCCTGAGCCT GTTGTATAGT AACTGTCTTT TTAAAAAAAT
 AAGTAGGAGT ACACTCTAAA TTAATAATGA AATTAAAGTA AATACAAAAA CCAGTAACGT
 GGGTGTTTAT TATCAAGTAG TATATACTGT CCATAATTGT AGTGATATGC TTTTTTAAGT
 GAAAGCAAGT TTATTAAGAA AGTAAAGGAA CAAAAGAATG GCTATTCCGC AGGTAAAGCA
 GTCTGTAGTG GTATACTTTG TATGTAATTG CAGCGCAGAT TTGTTTGCAC CAGCTAATGC
 GATGGGCTAT GACATTAACC CATCACTAGG TGAGAGGAAT TTTTCAACTT CATTATAATC
 TTATGGGACC ACCACATATA TGCAATCTGT TGTCGATCTA AATGTTATAT GGTGCATTAC
 TATAGGTGTG CAAAGCACTC GAGGACTTCC GTATGACAGA GCTCCTCCTT CATGTCTGCT
 TGGTGCACCC TGATCACCCT GAATGTATCT TTTTTTTTTT TTTTTTTGAG ACAGAGTCTC
 ACTCTGTCAC CCAGGCTGGA GTGCAGTGGT ACCATCTCTG CTCACTGCAA CCTCCACCTC
 CCGGGTTCAA GCGATTCTTC TGCCTCAGCC TCCTGAGTAG CTGGGACTAC AGGCAGCCGC
 TACCACACCA GGCTAAATTT CAACTTTTTA GTAGAGACAG CATTTTGCCA TGTTGGCCAG
 GCTGGTCTCG AACTCCTCAC CTCAAGTGAT CCACCCGTCT TGGCCTCCCA AAGTGCTGGG
 ATTAGAGGCA TGAGCTACCG TGCCTGGCCT GAAAGTGTCT TT

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_008470->NM_003329 function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/G	G/G	HWP	C	G
ss15706024	HapMap-CEU	European	120	IG	0.050	0.233	0.717	0.251	0.167	0.833
	HapMap-HCB	Asian	90	IG	0.333	0.600	0.067	0.100	0.633	0.367
	HapMap-JPT	Asian	88	IG	0.500	0.409	0.091	1.000	0.705	0.295
	HapMap-YRI	Sub-Saharan African	120	IG	0.033	0.167	0.800	0.150	0.117	0.883
ss24209506	AFD_EUR_PANEL	European	40	IG		0.350	0.650	0.371	0.175	0.825
	AFD_AFR_PANEL	African American	36	IG			1.000			1.000
	AFD_CHN_PANEL	Asian	38	IG	0.421	0.474	0.105	1.000	0.658	0.342
ss5587478	PDR90	Global	172	IG	0.128	0.419	0.453	0.584	0.337	0.663
ss69300083	HapMap-CEU	European	120	GF	0.033	0.350	0.617		0.208	0.792
	HapMap-HCB	Asian	90	GF	0.200	0.756	0.044		0.578	0.422
	HapMap-JPT	Asian	90	GF	0.356	0.556	0.089		0.633	0.367
	HapMap-YRI	Sub-Saharan African	120	GF	0.033	0.267	0.700		0.167	0.833

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
DoubleHit found by:  BCM_SSAHASNP	UNKNOWN	UNKNOWN	YES