Join Evaluation Legend

Serious alignment problem, requires review. (details...)
- Zero, or more than one, overlaps
- Half dove-tail >50 bp
- Alignment identity <98%
- Alignment length <100 bp
- >2 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Minor alignment problem. (details...)
- Exactly one overlap
- Half dove-tail >0 bp and <=50bp
- Alignment identity <99.1%
- Alignment length <2000 bp
- >0 gaps, each gap >25 bp, not marked as an SSR
- >0 gaps, each gap >50 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, not marked as an SSR
- >0 gaps, each gap >500 bp, marked as an SSR
Excellent alignment, meets all defined criteria. (details...)
- Exactly one RuleInfo
- Half dove-tail <=0 bp
- Alignment identity >=99.1%
- Alignment length >=2000 bp
- <=0 gaps, each gap >25 bp, not marked as an SSR
- <=0 gaps, each gap >50 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, not marked as an SSR
- <=0 gaps, each gap >500 bp, marked as an SSR
Certificate submitted, not yet approved.
Certificate submitted and approved.
Valid, contained clone
Join not evaluated due to one accession not being finished.

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Alignment for AC102385.23 and AC102383.7

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AC102385.23 Mus musculus chromosome 1, clone RP24-338N17, complete sequence [htgs_phase3]

Length: 119,980 bp

AC102383.7 Mus musculus chromosome 1, clone RP24-312K8, complete sequence [htgs_phase3]

Length: 142,805 bp

Alignment Summary

Join evaluation: green

Alignment count: 1

Go to Endhit Table

Alignment 1
Align ID: 6792
Total Length: 4564
Aligned Length: 4564
Percent Identity: 100
Number of Gaps: 0
Number of Mismatches: 0
Source: CtgOverlap Seq-Align
Valid Switchpoint: true (A)

Alignment 1 of 1

 Mismatches = 0, Gaps = 0, Length = 4564
 Percent identity = 100%
 Score = 9048 bits (4564), Expect = 0
  0 BAC and 2 Fosmid bridging clones.
  0 BAC and 0 Fosmid concordant clones.
  0 BAC and 2 Fosmid discordant clones.

AC102385.23 >115417  cgcagtctagtcttgtccctgattttgatgggattgcttcaattttttttccatttactt 115476 
AC102383.7  <142805  ............................................................ 142746 

AC102385.23 >115477  gatgcttactgttagtttgctgtatactgctttaattttaattgctttgaattcctgata 115536 
AC102383.7  <142745  ............................................................ 142686 

AC102385.23 >115537  tctctatgacttttaacatgaaagggtgttgtagtttgtcaaagactttctcagcatcta 115596 
AC102383.7  <142685  ............................................................ 142626 

AC102385.23 >115597  atgagatgatcatgtgattttttttttttgagtttttttatatagtggattatgttgatg 115656 
AC102383.7  <142625  ............................................................ 142566 

AC102385.23 >115657  gatttacatttattgcatcatgcctgcattcctgagatgaagcctacttgatcatgatga 115716 
AC102383.7  <142565  ............................................................ 142506 

AC102385.23 >115717  atgatggttttgatgctttcttggattttgtttttgagaattttattgaatatttttgca 115776 
AC102383.7  <142505  ............................................................ 142446 

AC102385.23 >115777  ttgacattcataagtgaaaatggtctgaaatcctttctttgctgggtttttgtatggctt 115836 
AC102383.7  <142445  ............................................................ 142386 

AC102385.23 >115837  aggtatcaacataacagtgagttcacagaaggaattaggtagtgtcccttctgtttttgt 115896 
AC102383.7  <142385  ............................................................ 142326 

AC102385.23 >115897  tttgaggaatagtttgaagagtattggtattagatcttcttcaacaatctgttataattc 115956 
AC102383.7  <142325  ............................................................ 142266 

AC102385.23 >115957  tgcactaaatccacctggctctgggatttttttggttggtaaaatttactgacttgttct 116016 
AC102383.7  <142265  ............................................................ 142206 

AC102385.23 >116017  atttcctcagggtttatgagactgttttgatagtttatctgatcattatgtaactttggt 116076 
AC102383.7  <142205  ............................................................ 142146 

AC102385.23 >116077  atgtgttatctgtctagaaaattgtcaatatcatctagatattccagtttcatttagtaa 116136 
AC102383.7  <142145  ............................................................ 142086 

AC102385.23 >116137  ataatttgtggtagactctgataagtttttgaatgtcctcagtttctgttactatgtctc 116196 
AC102383.7  <142085  ............................................................ 142026 

AC102385.23 >116197  ccttttcatttctgatcttattaatttggatactgtctctgggccctttagttagtttta 116256 
AC102383.7  <142025  ............................................................ 141966 

AC102385.23 >116257  ctaagaactgatctatcttgtagatttactcaaacaagatgctctacatctatgtaacct 116316 
AC102383.7  <141965  ............................................................ 141906 

AC102385.23 >116317  ctacattttctgggtctgtcatttaatagcagaacatttttgtggctctgcattcattct 116376 
AC102383.7  <141905  ............................................................ 141846 

AC102385.23 >116377  tcattaaaaaataacaaagaaaaatcaacaacaaaaagttctcacataatcccagtttct 116436 
AC102383.7  <141845  ............................................................ 141786 

AC102385.23 >116437  atagaatatgacatagtatcatcaagagctgctattaacttattatagttagctttctaa 116496 
AC102383.7  <141785  ............................................................ 141726 

AC102385.23 >116497  ttaaaatataggacagacaaaccacatgtaaactttatttcccttctgatacgattaaag 116556 
AC102383.7  <141725  ............................................................ 141666 

AC102385.23 >116557  tctaaatttgttatttagatccagtgtggaaatttttatctaaatagcatctcccccaat 116616 
AC102383.7  <141665  ............................................................ 141606 

AC102385.23 >116617  gtctccagtctcacagtgaattatgtgaattatatgaatcggatattgagaatttcaata 116676 
AC102383.7  <141605  ............................................................ 141546 

AC102385.23 >116677  tgacccaactgtggtcataattcctatttacgagataacaaggctaacactgaacatatt 116736 
AC102383.7  <141545  ............................................................ 141486 

AC102385.23 >116737  acttccttgaacatagtggtgagccaagcatagaataatagttatcgacattatcctttt 116796 
AC102383.7  <141485  ............................................................ 141426 

AC102385.23 >116797  caaaactaggaaattgaacttggaaaatggctcagtgggaaagccctcaccaggaaaacc 116856 
AC102383.7  <141425  ............................................................ 141366 

AC102385.23 >116857  tgaagactaggctacaggcactcactttgcacagagagagacacagagagctaggaacat 116916 
AC102383.7  <141365  ............................................................ 141306 

AC102385.23 >116917  agatattgaaagaagcttatgtttttaaaagtcaaataatttaagctgtgtaggatggat 116976 
AC102383.7  <141305  ............................................................ 141246 

AC102385.23 >116977  cagcaggtttgaatatttgggaaaggtcttcatgcagctcttgtccacacctagtcatga 117036 
AC102383.7  <141245  ............................................................ 141186 

AC102385.23 >117037  ggcacaattttagttccttagtgagccatggacattttcctttaaaagttcagctaactg 117096 
AC102383.7  <141185  ............................................................ 141126 

AC102385.23 >117097  aataaggcctcttggtttgccttatgaatgctctactgatttacactgtctaccaagtat 117156 
AC102383.7  <141125  ............................................................ 141066 

AC102385.23 >117157  ctagatacaactacctagacaagttcatggataatgtaactctgcccatagcccttgaac 117216 
AC102383.7  <141065  ............................................................ 141006 

AC102385.23 >117217  aattttgccatgtctttgggaactgtattaaccttgagttcctggaacttaagcactgaa 117276 
AC102383.7  <141005  ............................................................ 140946 

AC102385.23 >117277  tggcttaagcattgctctttcaccccataatcctatcatctgtgtctatgcagataccct 117336 
AC102383.7  <140945  ............................................................ 140886 

AC102385.23 >117337  tataggcattttggtgtctcttgaaggacatgaagtgttcattgccatgcactttgttag 117396 
AC102383.7  <140885  ............................................................ 140826 

AC102385.23 >117397  gctgactcctttctgtagagatcatggtcctcttcatttactttttctggcctcattggc 117456 
AC102383.7  <140825  ............................................................ 140766 

AC102385.23 >117457  agtgtttccaaaaatgatatacagtctgtttcattctctgtgagcccatgtggaccctgc 117516 
AC102383.7  <140765  ............................................................ 140706 

AC102385.23 >117517  ttagttgatttggtggagtatgttctcttggtgtctccatctcctctgactcctacagtc 117576 
AC102383.7  <140705  ............................................................ 140646 

AC102385.23 >117577  tttcttccctctcttacatgtggttcccaaaccacatggggtgggattgaataaagacct 117636 
AC102383.7  <140645  ............................................................ 140586 

AC102385.23 >117637  gcaatttagactttctctttataaagtatgctggggggggggtgtctctgcatctgttct 117696 
AC102383.7  <140585  ............................................................ 140526 

AC102385.23 >117697  catctgctgctggagaaagcctcacttataacatgtcaggacaagataccaatctatgag 117756 
AC102383.7  <140525  ............................................................ 140466 

AC102385.23 >117757  tatatatgttttagtggtgatccacccagatcctctgcagaactttctttaaaaatttgc 117816 
AC102383.7  <140465  ............................................................ 140406 

AC102385.23 >117817  aatctatgctcatagtcagctattggatgggtcacacggcccccaatggaagagctagag 117876 
AC102383.7  <140405  ............................................................ 140346 

AC102385.23 >117877  aaagtacccaaggagctaaagggaactgcaaccctataggtggaacaacaatatgaacta 117936 
AC102383.7  <140345  ............................................................ 140286 

AC102385.23 >117937  accagtaccctggagctcttgtctctagctgcatatgtatcacaagatggcctagtcggc 117996 
AC102383.7  <140285  ............................................................ 140226 

AC102385.23 >117997  tatcactggaaagaggggcccattggtcttgcaaactttatatgcctcagtacaggggaa 118056 
AC102383.7  <140225  ............................................................ 140166 

AC102385.23 >118057  tgccagggccaagaagtgggagttggtgggtaggggagttgggggagcatgggggacttt 118116 
AC102383.7  <140165  ............................................................ 140106 

AC102385.23 >118117  tgagatagcattggaaatgtaaatgaagaaaatacctaattaaaaaaaaagaaagagacc 118176 
AC102383.7  <140105  ............................................................ 140046 

AC102385.23 >118177  cgagctccaggtgagggggggatgggtattggggagtgggttggggatcatgtgggggac 118236 
AC102383.7  <140045  ............................................................ 139986 

AC102385.23 >118237  ttttgggatagcattggaaatgtaaatgaaataaatacccaatttaaaaaaaaagaaaaa 118296 
AC102383.7  <139985  ............................................................ 139926 

AC102385.23 >118297  aacaaaaaaaagaaaaaaatttgcagtctaattttggctcttgctgagttttctgattgg 118356 
AC102383.7  <139925  ............................................................ 139866 

AC102385.23 >118357  actcctgagttgttctgttaatgtcttcagcactggaaaacatgtctgacttaaacctaa 118416 
AC102383.7  <139865  ............................................................ 139806 

AC102385.23 >118417  ctttgtcactaagcattatactaagtatatttcttcatttccctatatatgtaattaaat 118476 
AC102383.7  <139805  ............................................................ 139746 

AC102385.23 >118477  tatattttttccaaaaatctagctgaattttacttactaggtctgtcctccatttttctc 118536 
AC102383.7  <139745  ............................................................ 139686 

AC102385.23 >118537  accttcctttcatattttccataagcagcaagaataaaaaaggttaaacatgattttgga 118596 
AC102383.7  <139685  ............................................................ 139626 

AC102385.23 >118597  aatgccctcagctacatacagacttaatatttaaaagtgttatattttttttacctgtag 118656 
AC102383.7  <139625  ............................................................ 139566 

AC102385.23 >118657  gaattaattccactcagtctgcatgaatatttttaatgtatttaatttccatatttttct 118716 
AC102383.7  <139565  ............................................................ 139506 

AC102385.23 >118717  aaaaagtgtctataatcaaaatattctctaagatatttaagatgacataatctttcccat 118776 
AC102383.7  <139505  ............................................................ 139446 

AC102385.23 >118777  attaacacttcattttaaaccctcaatggcagaaatttcaatgtctgtctatcagtagct 118836 
AC102383.7  <139445  ............................................................ 139386 

AC102385.23 >118837  ctctgtccagggatactagaatttttctattatcttcttcaaatgtctttcaatctgtct 118896 
AC102383.7  <139385  ............................................................ 139326 

AC102385.23 >118897  ctcctacccaatttcaaagctatatcagctttttagatattttgagaaataaaccaataa 118956 
AC102383.7  <139325  ............................................................ 139266 

AC102385.23 >118957  gttgtcccaagttgtattagctttctttgttcataacatcaatctgctgctaacactgtg 119016 
AC102383.7  <139265  ............................................................ 139206 

AC102385.23 >119017  ctttaaaatgaacacacacacacacacacacacacacacacacacacacacacttacaca 119076 
AC102383.7  <139205  ............................................................ 139146 

AC102385.23 >119077  cacacacttacacacacacacacacacacacacacacacacacacacttacacacacaca 119136 
AC102383.7  <139145  ............................................................ 139086 

AC102385.23 >119137  cacacacacacacacacacacacttattctcttggaggtcggaaatctaaaaataaaatc 119196 
AC102383.7  <139085  ............................................................ 139026 

AC102385.23 >119197  actgagagaaaatgacactattgatgaggtatatttcctcctaatgcctaggatagaaat 119256 
AC102383.7  <139025  ............................................................ 138966 

AC102385.23 >119257  agttgctggaattttctagtttatataagaacttcacagcctatagaatgtaattagata 119316 
AC102383.7  <138965  ............................................................ 138906 

AC102385.23 >119317  ttttccaaaaaacctaaagcaaagataatcaaaatatctagataatgattcgattgtggt 119376 
AC102383.7  <138905  ............................................................ 138846 

AC102385.23 >119377  ttccaagtatcaattatactataaaaggaaaaaaaaaacaccaaaacaatgtggttcatt 119436 
AC102383.7  <138845  ............................................................ 138786 

AC102385.23 >119437  ctaaaattaggattgaaaatatataaaatatacttgggataagtttcaggacaatataaa 119496 
AC102383.7  <138785  ............................................................ 138726 

AC102385.23 >119497  ttaaaacaacaaacagattatggagttcttatcaaaagaaattcagagttaactataagg 119556 
AC102383.7  <138725  ............................................................ 138666 

AC102385.23 >119557  atatttacaatattcactgaaactgcttttattggcataaagcattaactgtgtttttat 119616 
AC102383.7  <138665  ............................................................ 138606 

AC102385.23 >119617  ctatcagtcaatgacactagaaaacttcatgactaattaatcatacttaataggctattg 119676 
AC102383.7  <138605  ............................................................ 138546 

AC102385.23 >119677  aagaaccaaataaatatttgagagttccttaatataggaaaacaaaaaattatctctcct 119736 
AC102383.7  <138545  ............................................................ 138486 

AC102385.23 >119737  ggaaaaaaaaaccctgaagttaaagaaacattgaatgaagttactgtatataaaatatgc 119796 
AC102383.7  <138485  ............................................................ 138426 

AC102385.23 >119797  tggctaacgtggaaacataagctaaattattaactccataaatctcagtgaaaatagtat 119856 
AC102383.7  <138425  ............................................................ 138366 

AC102385.23 >119857  ttgaggaaataccattggccattcacaataccaagagagaaatatctagcattatcctca 119916 
AC102383.7  <138365  ............................................................ 138306 

AC102385.23 >119917  tattacccacagttctcaacaaaaattatgaatatgtatataactgagcagatctattaa 119976 
AC102383.7  <138305  ............................................................ 138246 

AC102385.23 >119977  gatc 119980 
AC102383.7  <138245  .... 138242

Switch Points

Type	Point1	Point2	Orient1	Orient2	Curator	Comment	Time
A	119980	138241	+	-	chenhc	Taxid 10090 chrom 1 Reference assembly	2008-11-20 16:48:36.176

Events

Id	Type	Date	Whodid	Comment
11686	InitHasAlign	01/19/2006 02:18:00	f_old_db
164370	CreateSwitchPt	11/20/2008 16:48:36	chenhc	tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib

BAC Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
C3H-178B10	AC102385.23	99.31%	pos 39588 (R-)
C3H-193C18				AC102383.7	99.39%	pos 21700 (F-)
C3H-41L8	AC102385.23	99.85%	pos 48498 (R-)
CH29-21J7				AC102385.23	99.51%	pos 31192 (F-)
CH29-2G12	AC102383.7	99.29%	pos 97411 (R-)
CH29-491A16				AC102383.7	99.33%	pos 16344 (F-)
CH29-567G21				AC102383.7	99.53%	pos 27568 (F-)
CH29-576F1				AC102383.7	99.38%	pos 16394 (F-)
CH29-581K21				AC102383.7	99.75%	pos 83775 (F-)
CH29-591J1	AC102385.23	99.83%	pos 66516 (R-)
CH29-592A17	AC102385.23	99.64%	pos 114185 (R+)
CH29-593A17	AC102385.23	99.88%	pos 114185 (R+)
RP24-103G9				AC102383.7	99.36%	pos 88153 (F-)
RP24-302H15	AC102383.7	99.31%	pos 6928 (R-)
RP24-377D15	AC102383.7	99.23%	pos 46801 (R-)

Fosmid Ends

Clone	R			F
Clone	Accession	%id	Position (strand)	Accession	%id	Position (strand)
WI1-1119A14	AC102383.7	99.84%	pos 78920 (R-)
WI1-1294L13	AC102385.23	100%	pos 107218 (R-)	AC102385.23	100%	pos 65989 (F+)
WI1-157O13	AC102385.23	100%	pos 102547 (R+)	AC102383.7	100%	pos 135543 (F+)
WI1-1637C8	AC102385.23	100%	pos 102067 (R-)	AC102385.23	100%	pos 64999 (F+)
WI1-1734D20	AC102383.7	99.83%	pos 24936 (R-)
WI1-1791O5	AC102383.7	99.6%	pos 135588 (R+)	AC102385.23	100%	pos 101140 (F+)
WI1-1927J17				AC102385.23	99.2%	pos 112548 (F-)
WI1-1927J17				AC102385.23	99.62%	pos 112553 (F-)
WI1-1932G4	AC102383.7	99.85%	pos 15800 (R+)	AC102383.7	100%	pos 54823 (F-)
WI1-1974D2	AC102383.7	100%	pos 127913 (R-)	AC102383.7	100%	pos 88765 (F+)
WI1-1989B16	AC102383.7	100%	pos 90769 (R-)	AC102383.7	100%	pos 50133 (F+)
WI1-2144N3				AC102383.7	100%	pos 58543 (F-)
WI1-2195L20	AC102383.7	100%	pos 106811 (R-)	AC102383.7	99.78%	pos 65377 (F+)
WI1-2233E6	AC102383.7	100%	pos 13880 (R-)
WI1-2403O20	AC102383.7	99.62%	pos 114558 (R-)	AC102383.7	99.33%	pos 77108 (F+)
WI1-2413C5	AC102383.7	99.6%	pos 77650 (R-)	AC102383.7	100%	pos 34647 (F+)
WI1-2428L4	AC102385.23	100%	pos 64963 (R-)	AC102385.23	100%	pos 27521 (F+)
WI1-258N4	AC102383.7	99.76%	pos 76358 (R-)
WI1-2653K4	AC102383.7	99.85%	pos 130796 (R-)	AC102383.7	100%	pos 88425 (F+)
WI1-2809O13	AC102385.23	99.31%	pos 56600 (R-)	AC102385.23	99.04%	pos 18500 (F+)
WI1-361L2	AC102385.23	100%	pos 58025 (R-)	AC102385.23	99.79%	pos 19798 (F+)
WI1-529H19	AC102385.23	99.73%	pos 26672 (R+)	AC102385.23	99.71%	pos 69514 (F-)
WI1-730J18				AC102383.7	100%	pos 11635 (F-)
WI1-755F23	AC102383.7	99.06%	pos 109827 (R-)
WI1-756M13	AC102385.23	100%	pos 97671 (R+)

NCBI

Join Evaluation Legend

Curator Links

Alignment for AC102385.23 and AC102383.7

Alignment Summary

Alignment 1 of 1