Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 5 |
| Arg | 4 |
| Asn | 3 |
| Asp | 2 |
| Cys | 1 |
| Gln | 2 |
| Glu | 3 |
| Gly | 5 |
| His | 1 |
| Ile | 2 |
| Leu | 5 |
| Lys | 5 |
| Met | 4 |
| Phe | 2 |
| Pro | 3 |
| Pseudo | 0 |
| Ser | 5 |
| Thr | 4 |
| Trp | 1 |
| Tyr | 2 |
| Undet | 0 |
| Val | 4 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | GGC | Contig263 | 16 | 1874138..1874213 | 0..0 | 84.17 | 66.82 |
| Ala | TGC | Contig263 | 15 | 1852868..1852943 | 0..0 | 91.40 | 74.78 |
| Ala | TGC | Contig263 | 26 | 3983465..3983390 | 0..0 | 91.40 | 74.78 |
| Ala | TGC | Contig263 | 4 | 455609 ..455684 | 0..0 | 91.40 | 74.78 |
| Ala | TGC | Contig263 | 6 | 606937 ..607012 | 0..0 | 91.40 | 74.78 |
| Arg | ACG | Contig263 | 63 | 54785 ..54709 | 0..0 | 74.11 | 52.15 |
| Arg | CCG | Contig263 | 37 | 3533840..3533766 | 0..0 | 54.80 | 35.28 |
| Arg | CCT | Contig263 | 25 | 4030260..4030336 | 0..0 | 78.32 | 54.51 |
| Arg | TCT | Contig263 | 13 | 1653026..1653102 | 0..0 | 84.76 | 61.18 |
| Asn | GTT | Contig263 | 48 | 2910156..2910081 | 0..0 | 87.52 | 56.45 |
| Asn | GTT | Contig263 | 5 | 459490 ..459565 | 0..0 | 87.52 | 56.45 |
| Asn | GTT | Contig263 | 7 | 629074 ..629149 | 0..0 | 87.52 | 56.45 |
| Asp | GTC | Contig263 | 39 | 3456137..3456061 | 0..0 | 88.22 | 67.84 |
| Asp | GTC | Contig263 | 45 | 2920520..2920444 | 0..0 | 88.22 | 67.84 |
| Cys | GCA | Contig263 | 42 | 3455822..3455748 | 0..0 | 77.20 | 46.23 |
| Gln | CTG | Contig263 | 55 | 2126858..2126785 | 0..0 | 60.40 | 33.78 |
| Gln | TTG | Contig263 | 56 | 1741763..1741687 | 0..0 | 76.53 | 52.00 |
| Glu | CTC | Contig263 | 24 | 2543223..2543298 | 0..0 | 71.78 | 46.12 |
| Glu | TTC | Contig263 | 35 | 3540689..3540615 | 0..0 | 71.08 | 49.40 |
| Glu | TTC | Contig263 | 44 | 2920614..2920540 | 0..0 | 77.43 | 51.77 |
| Gly | CCC | Contig263 | 30 | 3862509..3862436 | 0..0 | 84.90 | 63.31 |
| Gly | GCC | Contig263 | 41 | 3455941..3455867 | 0..0 | 82.50 | 53.87 |
| Gly | GCC | Contig263 | 49 | 2676759..2676685 | 0..0 | 81.81 | 53.90 |
| Gly | TCC | Contig263 | 12 | 1652937..1653010 | 0..0 | 86.32 | 64.72 |
| Gly | TCC | Contig263 | 50 | 2676679..2676606 | 0..0 | 86.32 | 64.72 |
| His | GTG | Contig263 | 14 | 1738952..1739028 | 0..0 | 71.95 | 47.98 |
| Ile | GAT | Contig263 | 10 | 889678 ..889754 | 0..0 | 94.21 | 70.17 |
| Ile | GAT | Contig263 | 9 | 656638 ..656714 | 0..0 | 94.21 | 70.17 |
| Leu | CAA | Contig263 | 52 | 2379073..2378987 | 0..0 | 72.18 | 50.26 |
| Leu | CAG | Contig263 | 17 | 2075290..2075376 | 0..0 | 65.26 | 36.60 |
| Leu | GAG | Contig263 | 23 | 2336432..2336514 | 0..0 | 52.47 | 33.89 |
| Leu | TAA | Contig263 | 32 | 3617736..3617648 | 0..0 | 77.22 | 49.66 |
| Leu | TAG | Contig263 | 58 | 1724005..1723923 | 0..0 | 70.16 | 48.87 |
| Lys | CTT | Contig263 | 21 | 2219951..2220026 | 0..0 | 94.13 | 77.71 |
| Lys | CTT | Contig263 | 22 | 2222891..2222966 | 0..0 | 94.13 | 77.71 |
| Lys | CTT | Contig263 | 60 | 732730 ..732655 | 0..0 | 94.13 | 77.71 |
| Lys | TTT | Contig263 | 43 | 2921469..2921394 | 0..0 | 87.19 | 53.65 |
| Lys | TTT | Contig263 | 57 | 1741683..1741608 | 0..0 | 87.19 | 53.65 |
| Met | CAT | Contig263 | 18 | 2110959..2111035 | 0..0 | 99.86 | 76.82 |
| Met | CAT | Contig263 | 33 | 3616624..3616549 | 0..0 | 89.33 | 64.12 |
| Met | CAT | Contig263 | 34 | 3540798..3540722 | 0..0 | 82.85 | 69.88 |
| Met | CAT | Contig263 | 8 | 629154 ..629230 | 0..0 | 99.86 | 76.82 |
| Phe | GAA | Contig263 | 19 | 2111073..2111148 | 0..0 | 88.33 | 65.96 |
| Phe | GAA | Contig263 | 40 | 3456056..3455981 | 0..0 | 88.33 | 65.96 |
| Pro | CGG | Contig263 | 11 | 1619883..1619958 | 0..0 | 74.44 | 53.25 |
| Pro | GGG | Contig263 | 53 | 2227411..2227334 | 0..0 | 75.80 | 50.04 |
| Pro | TGG | Contig263 | 27 | 3954822..3954747 | 0..0 | 77.42 | 56.84 |
| Ser | CGA | Contig263 | 3 | 255425 ..255513 | 0..0 | 67.50 | 39.07 |
| Ser | GCT | Contig263 | 2 | 10007 ..10098 | 0..0 | 72.64 | 37.88 |
| Ser | GCT | Contig263 | 59 | 965440 ..965367 | 0..0 | 65.56 | 45.18 |
| Ser | GGA | Contig263 | 62 | 216496 ..216405 | 0..0 | 71.11 | 50.07 |
| Ser | TGA | Contig263 | 1 | 9876 ..9966 | 0..0 | 76.02 | 44.30 |
| Thr | CGT | Contig263 | 54 | 2201386..2201311 | 0..0 | 88.33 | 59.77 |
| Thr | GGT | Contig263 | 31 | 3862430..3862355 | 0..0 | 78.52 | 49.37 |
| Thr | TGT | Contig263 | 29 | 3918951..3918876 | 0..0 | 83.55 | 71.17 |
| Thr | TGT | Contig263 | 46 | 2920236..2920161 | 0..0 | 84.67 | 72.29 |
| Trp | CCA | Contig263 | 61 | 661710 ..661635 | 0..0 | 77.84 | 59.59 |
| Tyr | GTA | Contig263 | 20 | 2117852..2117936 | 0..0 | 63.66 | 37.76 |
| Tyr | GTA | Contig263 | 47 | 2920157..2920073 | 0..0 | 63.66 | 37.76 |
| Val | GAC | Contig263 | 51 | 2445283..2445207 | 0..0 | 82.69 | 58.50 |
| Val | TAC | Contig263 | 28 | 3919190..3919115 | 0..0 | 90.30 | 70.19 |
| Val | TAC | Contig263 | 36 | 3540611..3540536 | 0..0 | 90.30 | 70.19 |
| Val | TAC | Contig263 | 38 | 3456233..3456158 | 0..0 | 90.30 | 70.19 |
tRNA Models
Contig263.trna1 (9876-9966) Length: 91 bp
Type: Ser Anticodon: TGA at 36-38 (9911-9913) Score: 76.02
HMM Sc=44.30 Sec struct Sc=31.72
* | * | * | * | * | * | * | * | * |
Seq: GGAGAGATGGTCGAGTTGGTttAAGGCACCGGTCTTGAAAACCGGCGTAGGTGTGAGCCTACCGTGAGTTCGAATCTCACTCTCTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....
Contig263.trna2 (10007-10098) Length: 92 bp
Type: Ser Anticodon: GCT at 36-38 (10042-10044) Score: 72.64
HMM Sc=37.88 Sec struct Sc=34.76
* | * | * | * | * | * | * | * | * |
Seq: GGAGAAGTACCCAAGTAGGTcgAAGGGGACGGTTTGCTAAACCGTTAGTCTGGGCAACTGGAGCAAGGGTTCGAATCCCTTCTTCTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig263.trna3 (255425-255513) Length: 89 bp
Type: Ser Anticodon: CGA at 36-38 (255460-255462) Score: 67.50
HMM Sc=39.07 Sec struct Sc=28.43
* | * | * | * | * | * | * | * | *
Seq: GGAGAGGTATCGAAGAGGTcatAACGGGGCTGACTCGAAATCAGTTTGTCGGAAACGGCACGCGGGTTCGAATCCCGCCCTCTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<..>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig263.trna4 (455609-455684) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (455642-455644) Score: 91.40
HMM Sc=74.78 Sec struct Sc=16.62
* | * | * | * | * | * | * | *
Seq: GGGGGTATAGCTCAGCTGGGAGAGCACCTGCCTTGCAAGCAGGGGGtCATGAGTTCGATTCTCATTATCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna5 (459490-459565) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (459523-459525) Score: 87.52
HMM Sc=56.45 Sec struct Sc=31.07
* | * | * | * | * | * | * | *
Seq: TCCTCAATAGCTCAGTCGGTAGAGCATGCGGCTGTTAACCGCAGGGtCGTAGGTTCAAGTCCTACTTGAGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna6 (606937-607012) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (606970-606972) Score: 91.40
HMM Sc=74.78 Sec struct Sc=16.62
* | * | * | * | * | * | * | *
Seq: GGGGGTATAGCTCAGCTGGGAGAGCACCTGCCTTGCAAGCAGGGGGtCATGAGTTCGATTCTCATTATCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna7 (629074-629149) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (629107-629109) Score: 87.52
HMM Sc=56.45 Sec struct Sc=31.07
* | * | * | * | * | * | * | *
Seq: TCCTCAATAGCTCAGTCGGTAGAGCATGCGGCTGTTAACCGCAGGGtCGTAGGTTCAAGTCCTACTTGAGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna8 (629154-629230) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (629188-629190) Score: 99.86
HMM Sc=76.82 Sec struct Sc=23.04
* | * | * | * | * | * | * | *
Seq: GGGCCTTTAGCTCAGTTGGTtAGAGCAACCGGCTCATAACCGGTTGGtCCGGGGTTCGAGTCCCTGAAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna9 (656638-656714) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (656672-656674) Score: 94.21
HMM Sc=70.17 Sec struct Sc=24.04
* | * | * | * | * | * | * | *
Seq: GGGCTCATAGCTCAGATGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGATGGTTCGATTCCATTTGAGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna10 (889678-889754) Length: 77 bp
Type: Ile Anticodon: GAT at 35-37 (889712-889714) Score: 94.21
HMM Sc=70.17 Sec struct Sc=24.04
* | * | * | * | * | * | * | *
Seq: GGGCTCATAGCTCAGATGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGATGGTTCGATTCCATTTGAGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna11 (1619883-1619958) Length: 76 bp
Type: Pro Anticodon: CGG at 34-36 (1619916-1619918) Score: 74.44
HMM Sc=53.25 Sec struct Sc=21.19
* | * | * | * | * | * | * | *
Seq: CGGGGTGTGGCTCAGTTGGTAGAGTGCGACGTTCGGGACGTTGAGGcCGCTGGTTCAAGTCCAGTCACTCCGACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna12 (1652937-1653010) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (1652969-1652971) Score: 86.32
HMM Sc=64.72 Sec struct Sc=21.60
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGTTCAATGGTAGAACATCAGCCTTCCAAGCTGATTGCGTGGGTTCGATTCCCATCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig263.trna13 (1653026-1653102) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (1653060-1653062) Score: 84.76
HMM Sc=61.18 Sec struct Sc=23.58
* | * | * | * | * | * | * | *
Seq: GTGCCCATAGCTCAGCTGGAtAGAGCAACGGCCTTCTAAGCCGTAGGtCTTGGGTTCGAATCCCCATGGGCACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig263.trna14 (1738952-1739028) Length: 77 bp
Type: His Anticodon: GTG at 35-37 (1738986-1738988) Score: 71.95
HMM Sc=47.98 Sec struct Sc=23.97
* | * | * | * | * | * | * | *
Seq: GTGGGTATAGCTCAGTTGGTtAGAGCGCCAGATTGTGGCTCTGGAGGcCGTGGATTCGAATTCCACTATTCACCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna15 (1852868-1852943) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (1852901-1852903) Score: 91.40
HMM Sc=74.78 Sec struct Sc=16.62
* | * | * | * | * | * | * | *
Seq: GGGGGTATAGCTCAGCTGGGAGAGCACCTGCCTTGCAAGCAGGGGGtCATGAGTTCGATTCTCATTATCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna16 (1874138-1874213) Length: 76 bp
Type: Ala Anticodon: GGC at 34-36 (1874171-1874173) Score: 84.17
HMM Sc=66.82 Sec struct Sc=17.35
* | * | * | * | * | * | * | *
Seq: GGGGCATTAGCGCAGTTGGGAGCGCATCACACTGGCAGTGTGGGGGtCAGGGGTTCAAGTCCCCTATGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna17 (2075290-2075376) Length: 87 bp
Type: Leu Anticodon: CAG at 35-37 (2075324-2075326) Score: 65.26
HMM Sc=36.60 Sec struct Sc=28.66
* | * | * | * | * | * | * | * | *
Seq: GCGGATATGGCGGAATTGGCaGACGCGCATGGTTCAGGTCCATGTGAAAGCAATTTCATGCAGGTTCAACTCCTGTTATCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<....
Contig263.trna18 (2110959-2111035) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (2110993-2110995) Score: 99.86
HMM Sc=76.82 Sec struct Sc=23.04
* | * | * | * | * | * | * | *
Seq: GGGCCTTTAGCTCAGTTGGTtAGAGCAACCGGCTCATAACCGGTTGGtCCGGGGTTCGAGTCCCTGAAGGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna19 (2111073-2111148) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (2111106-2111108) Score: 88.33
HMM Sc=65.96 Sec struct Sc=22.37
* | * | * | * | * | * | * | *
Seq: GCCCAGATAGCTCAGTCGGTAGAGCAGGGGACTGAAAATCCCCGTGtCGCTGGTTCGATTCCGGCTCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna20 (2117852-2117936) Length: 85 bp
Type: Tyr Anticodon: GTA at 35-37 (2117886-2117888) Score: 63.66
HMM Sc=37.76 Sec struct Sc=25.90
* | * | * | * | * | * | * | * |
Seq: GGAGGGGTTCCCGAGTGGCcaAAGGGGGCAGACTGTAAATCTGTTGTCTCTGACTtCGATGGTTCGAATCCATCTCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....
Contig263.trna21 (2219951-2220026) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (2219984-2219986) Score: 94.13
HMM Sc=77.71 Sec struct Sc=16.42
* | * | * | * | * | * | * | *
Seq: GCGCCATTAGCTCAGTTGGTAGAGCACCTGACTCTTAATCAGGGTGtCCCGGGTTCGAATCCCTGATGGCGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig263.trna22 (2222891-2222966) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (2222924-2222926) Score: 94.13
HMM Sc=77.71 Sec struct Sc=16.42
* | * | * | * | * | * | * | *
Seq: GCGCCATTAGCTCAGTTGGTAGAGCACCTGACTCTTAATCAGGGTGtCCCGGGTTCGAATCCCTGATGGCGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig263.trna23 (2336432-2336514) Length: 83 bp
Type: Leu Anticodon: GAG at 35-37 (2336466-2336468) Score: 52.47
HMM Sc=33.89 Sec struct Sc=18.58
* | * | * | * | * | * | * | * |
Seq: GCGGTCGTGGCGGAACTGGCaGACGCGTACGTTTGAGGGGCGTATGGGAGACCGTGTGGGTTCAAGTCCCACCGTCCGCACCA
Str: >>>>.>>..>>>...........<<<.>>>>>.......<<<<<.>>....<<..>>>>>.......<<<<<<<.<<<<....
Contig263.trna24 (2543223-2543298) Length: 76 bp
Type: Glu Anticodon: CTC at 35-37 (2543257-2543259) Score: 71.78
HMM Sc=46.12 Sec struct Sc=25.66
* | * | * | * | * | * | * | *
Seq: GGCCCATTGGTCAAGTGGCctAAGACACCGCCCTCTCACGGCGGTAACAGGGGTTCGAATCCCCTATGGGTCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig263.trna25 (4030260-4030336) Length: 77 bp
Type: Arg Anticodon: CCT at 35-37 (4030294-4030296) Score: 78.32
HMM Sc=54.51 Sec struct Sc=23.81
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAGCAGGAtAGAGCGTCGGTTTCCTAAACCGCAGGtCGCACGTTCGAATCGTGTCGGGCGTACCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig263.trna26 (3983465-3983390) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (3983432-3983430) Score: 91.40
HMM Sc=74.78 Sec struct Sc=16.62
* | * | * | * | * | * | * | *
Seq: GGGGGTATAGCTCAGCTGGGAGAGCACCTGCCTTGCAAGCAGGGGGtCATGAGTTCGATTCTCATTATCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna27 (3954822-3954747) Length: 76 bp
Type: Pro Anticodon: TGG at 34-36 (3954789-3954787) Score: 77.42
HMM Sc=56.84 Sec struct Sc=20.58
* | * | * | * | * | * | * | *
Seq: CGGGGTGTAGCGCAATTGGCAGCGCGCTTGGTTTGGGACCAAGATGcTGGAGGTTCAAGTCCTCTCACTCCGACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna28 (3919190-3919115) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (3919157-3919155) Score: 90.30
HMM Sc=70.19 Sec struct Sc=20.11
* | * | * | * | * | * | * | *
Seq: GGGAGCTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCATAGGTTCGAGCCCTATAGTTCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna29 (3918951-3918876) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (3918918-3918916) Score: 83.55
HMM Sc=71.17 Sec struct Sc=12.38
* | * | * | * | * | * | * | *
Seq: GCTGGTGTAGCTCAGCAGGTAGAGCAGCTGACTTGTAATCAGCAGGtCGGGGGTTCAATTCCGTCCGCCAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....
Contig263.trna30 (3862509-3862436) Length: 74 bp
Type: Gly Anticodon: CCC at 33-35 (3862477-3862475) Score: 84.90
HMM Sc=63.31 Sec struct Sc=21.59
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGTTCAATGGTAGAACATCAGCTTCCCAAGCTGACAGCGTGGGTTCGATTCCCATCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig263.trna31 (3862430-3862355) Length: 76 bp
Type: Thr Anticodon: GGT at 34-36 (3862397-3862395) Score: 78.52
HMM Sc=49.37 Sec struct Sc=29.15
* | * | * | * | * | * | * | *
Seq: GCTCCCATAGCTCAGTAGGCAGAGCGCATCCATGGTAAGGATGAGGtCATCAGTTCGACTCTGATTGGGAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna32 (3617736-3617648) Length: 89 bp
Type: Leu Anticodon: TAA at 35-37 (3617702-3617700) Score: 77.22
HMM Sc=49.66 Sec struct Sc=27.56
* | * | * | * | * | * | * | * | *
Seq: GCCGAAGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGCGGGACTAACCTCCCGTACCGGTTCGATTCCGGTCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....
Contig263.trna33 (3616624-3616549) Length: 76 bp
Type: Met Anticodon: CAT at 34-36 (3616591-3616589) Score: 89.33
HMM Sc=64.12 Sec struct Sc=25.21
* | * | * | * | * | * | * | *
Seq: CGCGGGATGGAGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAGTCCTGCTCCCGCAACCA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig263.trna34 (3540798-3540722) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (3540764-3540762) Score: 82.85
HMM Sc=69.88 Sec struct Sc=12.97
* | * | * | * | * | * | * | *
Seq: GGCGGCGTAGCTCAGTTGGCcAGAGCATCCGGTTCATACCCGGCAGGtCGTAGGTTCAAATCCCACCGCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<..>>>>.......<<<<......>>.>>.......<<.<<<<<<<<<....
Contig263.trna35 (3540689-3540615) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (3540656-3540654) Score: 71.08
HMM Sc=49.40 Sec struct Sc=21.68
* | * | * | * | * | * | * |
Seq: GGCCCATTGGTCAAGCGGTtAAGACACCGCCCTTTCACGGCGATAACAGGGGTTCGATTCCCCTATGGGTCACCA
Str: >>>>>>>..>>>..........<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna36 (3540611-3540536) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (3540578-3540576) Score: 90.30
HMM Sc=70.19 Sec struct Sc=20.11
* | * | * | * | * | * | * | *
Seq: GGGAGCTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCATAGGTTCGAGCCCTATAGTTCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna37 (3533840-3533766) Length: 75 bp
Type: Arg Anticodon: CCG at 34-36 (3533807-3533805) Score: 54.80
HMM Sc=35.28 Sec struct Sc=19.52
* | * | * | * | * | * | * |
Seq: GTCTCGGTAGTCCAATGGAtAAGACGGTGGATTCCGGTTCCACTGATACGGGTTCGATTCCTGTCCGGGACGCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig263.trna38 (3456233-3456158) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (3456200-3456198) Score: 90.30
HMM Sc=70.19 Sec struct Sc=20.11
* | * | * | * | * | * | * | *
Seq: GGGAGCTTAGCTCAGCTGGGAGAGCATCTGCCTTACAAGCAGAGGGtCATAGGTTCGAGCCCTATAGTTCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna39 (3456137-3456061) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (3456103-3456101) Score: 88.22
HMM Sc=67.84 Sec struct Sc=20.38
* | * | * | * | * | * | * | *
Seq: GGCCCGGTAGTTCAGTTGGTtAGAATGCCAGCCTGTCACGCTGGAGGtCGACGGTTCGAGCCCGTTCCGGGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna40 (3456056-3455981) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (3456023-3456021) Score: 88.33
HMM Sc=65.96 Sec struct Sc=22.37
* | * | * | * | * | * | * | *
Seq: GCCCAGATAGCTCAGTCGGTAGAGCAGGGGACTGAAAATCCCCGTGtCGCTGGTTCGATTCCGGCTCTGGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna41 (3455941-3455867) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (3455909-3455907) Score: 82.50
HMM Sc=53.87 Sec struct Sc=28.63
* | * | * | * | * | * | * |
Seq: GCGGGTTTAACTCAGTGGTAGAGTGTCACCTTGCCAAGGTGAAAGtCGAGAGTTCGAATCTCTTAACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna42 (3455822-3455748) Length: 75 bp
Type: Cys Anticodon: GCA at 33-35 (3455790-3455788) Score: 77.20
HMM Sc=46.23 Sec struct Sc=30.97
* | * | * | * | * | * | * |
Seq: GGCGCCATAGCCAAGTGGTAAGGCAGAGGTCTGCAAAACCTTTATtCCCCAGTTCAAATCTGGGTGGCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna43 (2921469-2921394) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (2921436-2921434) Score: 87.19
HMM Sc=53.65 Sec struct Sc=33.54
* | * | * | * | * | * | * | *
Seq: GACCCATTAGCTCAGTTGGCAGAGCACTTGACTTTTAATCAAGGTGtCCCGCGTTCGAGTCGCGGATGGGTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna44 (2920614-2920540) Length: 75 bp
Type: Glu Anticodon: TTC at 34-36 (2920581-2920579) Score: 77.43
HMM Sc=51.77 Sec struct Sc=25.66
* | * | * | * | * | * | * |
Seq: GGCCCATTGGTCAAGCGGTtAAGACACCGCCCTTTCACGGCGGTAACAGGGGTTCGAGTCCCCTATGGGTCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig263.trna45 (2920520-2920444) Length: 77 bp
Type: Asp Anticodon: GTC at 35-37 (2920486-2920484) Score: 88.22
HMM Sc=67.84 Sec struct Sc=20.38
* | * | * | * | * | * | * | *
Seq: GGCCCGGTAGTTCAGTTGGTtAGAATGCCAGCCTGTCACGCTGGAGGtCGACGGTTCGAGCCCGTTCCGGGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna46 (2920236-2920161) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (2920203-2920201) Score: 84.67
HMM Sc=72.29 Sec struct Sc=12.38
* | * | * | * | * | * | * | *
Seq: GCTGGTGTAGCTCAGCAGGTAGAGCAGCTGACTTGTAATCAGCAGGtCGGGGGTTCGATTCCGTCCGCCAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>.>>.......<<.<<<<<<<<<....
Contig263.trna47 (2920157-2920073) Length: 85 bp
Type: Tyr Anticodon: GTA at 35-37 (2920123-2920121) Score: 63.66
HMM Sc=37.76 Sec struct Sc=25.90
* | * | * | * | * | * | * | * |
Seq: GGAGGGGTTCCCGAGTGGCcaAAGGGGGCAGACTGTAAATCTGTTGTCTCTGACTtCGATGGTTCGAATCCATCTCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....
Contig263.trna48 (2910156-2910081) Length: 76 bp
Type: Asn Anticodon: GTT at 34-36 (2910123-2910121) Score: 87.52
HMM Sc=56.45 Sec struct Sc=31.07
* | * | * | * | * | * | * | *
Seq: TCCTCAATAGCTCAGTCGGTAGAGCATGCGGCTGTTAACCGCAGGGtCGTAGGTTCAAGTCCTACTTGAGGAGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna49 (2676759-2676685) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (2676727-2676725) Score: 81.81
HMM Sc=53.90 Sec struct Sc=27.91
* | * | * | * | * | * | * |
Seq: GCGGGTTTAACTCAGCGGTAGAGTGTCACCTTGCCAAGGTGAAAGtCGCGAGTTCAAATCTCGTAACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna50 (2676679-2676606) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (2676647-2676645) Score: 86.32
HMM Sc=64.72 Sec struct Sc=21.60
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGTTCAATGGTAGAACATCAGCCTTCCAAGCTGATTGCGTGGGTTCGATTCCCATCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig263.trna51 (2445283-2445207) Length: 77 bp
Type: Val Anticodon: GAC at 35-37 (2445249-2445247) Score: 82.69
HMM Sc=58.50 Sec struct Sc=24.19
* | * | * | * | * | * | * | *
Seq: GACGGATTAGCTCAGTTGGTtAGAGTACTACCTTGACATGGTAGGGGtCACTGGTTCGAGCCCAGTATTCGTCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna52 (2379073-2378987) Length: 87 bp
Type: Leu Anticodon: CAA at 35-37 (2379039-2379037) Score: 72.18
HMM Sc=50.26 Sec struct Sc=21.92
* | * | * | * | * | * | * | * | *
Seq: GCCGAAGTGGTGAAACTGGCaGACGCACTGGACTCAAAATCCAGCGGTAGCGATACCGTACCGGTTCGATTCCGGTCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.><.<<<<..>>>>>.......<<<<<<<<<<<<....
Contig263.trna53 (2227411-2227334) Length: 78 bp
Type: Pro Anticodon: GGG at 36-38 (2227376-2227374) Score: 75.80
HMM Sc=50.04 Sec struct Sc=25.76
* | * | * | * | * | * | * | *
Seq: CGGGATGTAGCTCAGTTtGGCtAGAGTGCTTGCTTGGGGTGCAAGAGGtCGCGTGTTCAAGTCACGTCATTCCGACCA
Str: >>>>>>>..>>>>..........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna54 (2201386-2201311) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (2201353-2201351) Score: 88.33
HMM Sc=59.77 Sec struct Sc=28.56
* | * | * | * | * | * | * | *
Seq: GCTGGTATAGCACAGTCGGTAGTGCAGCTGATTCGTAATCAGCAGGtCAGCGGTTCGATTCCGCTTACCAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna55 (2126858-2126785) Length: 74 bp
Type: Gln Anticodon: CTG at 33-35 (2126826-2126824) Score: 60.40
HMM Sc=33.78 Sec struct Sc=26.62
* | * | * | * | * | * | * |
Seq: TGCGGGTTTGTGTAAAGGTAGCACGACTGATTCTGGATCAGTTTGTCAGGGTTCGAATCCTTGACCCGCAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig263.trna56 (1741763-1741687) Length: 77 bp
Type: Gln Anticodon: TTG at 34-36 (1741730-1741728) Score: 76.53
HMM Sc=52.00 Sec struct Sc=24.53
* | * | * | * | * | * | * | *
Seq: TGGGATGTAGCCAAGCCGGTAAGGCACCAGACTTTGACTCTGGCATttCGTTGGTTCGAGTCCAGCCATCCCAGCCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<......>>>>>.......<<<<<<<<<<<<....
Contig263.trna57 (1741683-1741608) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (1741650-1741648) Score: 87.19
HMM Sc=53.65 Sec struct Sc=33.54
* | * | * | * | * | * | * | *
Seq: GACCCATTAGCTCAGTTGGCAGAGCACTTGACTTTTAATCAAGGTGtCCCGCGTTCGAGTCGCGGATGGGTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna58 (1724005-1723923) Length: 83 bp
Type: Leu Anticodon: TAG at 35-37 (1723971-1723969) Score: 70.16
HMM Sc=48.87 Sec struct Sc=21.29
* | * | * | * | * | * | * | * |
Seq: GCGGATGTGGCGGAATTGGCaGACGCGCTGGATTTAGGTTCCAGTGGGAGACCGTGGGGGTTCAAGTCCCTTCATCCGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>....<<..>>>>>.......<<<<<<<<<<<<....
Contig263.trna59 (965440-965367) Length: 74 bp
Type: Ser Anticodon: GCT at 35-37 (965406-965404) Score: 65.56
HMM Sc=45.18 Sec struct Sc=20.38
* | * | * | * | * | * | * |
Seq: ACCGTATTGGCTTAGTTGGAtAAAGCAACCGCCTGCTAAGCGGTAGAtCGTGGGTTCGAGTCCCACATACGAAA
Str: ..>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<...
Contig263.trna60 (732730-732655) Length: 76 bp
Type: Lys Anticodon: CTT at 34-36 (732697-732695) Score: 94.13
HMM Sc=77.71 Sec struct Sc=16.42
* | * | * | * | * | * | * | *
Seq: GCGCCATTAGCTCAGTTGGTAGAGCACCTGACTCTTAATCAGGGTGtCCCGGGTTCGAATCCCTGATGGCGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>.>>>.......<<<.<<<<<<<<....
Contig263.trna61 (661710-661635) Length: 76 bp
Type: Trp Anticodon: CCA at 34-36 (661677-661675) Score: 77.84
HMM Sc=59.59 Sec struct Sc=18.25
* | * | * | * | * | * | * | *
Seq: AGGGGAGTAGCTCAATTGGTAGAGTAGCGGTCTCCAAAACCGTCGGcTGCGGGTTCAAGTCCTGTCTCCCCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig263.trna62 (216496-216405) Length: 92 bp
Type: Ser Anticodon: GGA at 36-38 (216461-216459) Score: 71.11
HMM Sc=50.07 Sec struct Sc=21.04
* | * | * | * | * | * | * | * | * |
Seq: GGAGAGATGGCTGAGCTGGTcgAAGGCGCACGACTGGAAATCGTGTAACGGCTAATaCCCGTtCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<...>>>.......<<<...>>>>>.......<<<<<<<<<<<<....
Contig263.trna63 (54785-54709) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (54751-54749) Score: 74.11
HMM Sc=52.15 Sec struct Sc=21.96
* | * | * | * | * | * | * | *
Seq: GCGCCCGTAGCTCAATTGGAtAGAGCGTCTGGCTACGGACCAGAAGGtTGTGGATTCGATCTCTGCCGGGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
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