Summary of the tRNAs found by tRNAscan-se
| Amino Acid | Count |
|---|
| Ala | 7 |
| Arg | 7 |
| Asn | 4 |
| Asp | 3 |
| Cys | 1 |
| Gln | 4 |
| Glu | 5 |
| Gly | 8 |
| His | 2 |
| Ile | 3 |
| Leu | 7 |
| Lys | 4 |
| Met | 5 |
| Phe | 2 |
| Pro | 5 |
| Pseudo | 0 |
| Ser | 6 |
| Thr | 5 |
| Trp | 1 |
| Tyr | 2 |
| Undet | 0 |
| Val | 5 |
List of tRNAs found by tRNAscan-se
| Amino Acid | Anticodon | Contig | tRNA | tRNA Location | Intron Location | Cove Score | HMM Score |
|---|
| Ala | CGC | Contig62 | 10 | 209267..209195 | 0..0 | 79.60 | 61.62 |
| Ala | GGC | Contig13 | 1 | 6871 ..6799 | 0..0 | 73.41 | 53.44 |
| Ala | GGC | Contig62 | 3 | 127731..127802 | 0..0 | 71.62 | 49.16 |
| Ala | TGC | Contig29 | 7 | 34128..34053 | 0..0 | 84.52 | 66.51 |
| Ala | TGC | Contig2 | 11 | 26496..26421 | 0..0 | 86.29 | 68.28 |
| Ala | TGC | Contig72 | 10 | 52846 ..52771 | 0..0 | 93.97 | 75.96 |
| Ala | TGC | Contig72 | 8 | 55465 ..55393 | 0..0 | 81.81 | 63.82 |
| Arg | ACG | Contig2 | 9 | 26658..26585 | 0..0 | 75.36 | 55.23 |
| Arg | ACG | Contig51 | 9 | 1538 ..1462 | 0..0 | 83.65 | 63.51 |
| Arg | ACG | Contig72 | 6 | 55629 ..55556 | 0..0 | 75.36 | 55.23 |
| Arg | ACG | Contig75 | 2 | 2663..2590 | 0..0 | 75.36 | 55.23 |
| Arg | CCG | Contig14 | 1 | 49281 ..49352 | 0..0 | 56.50 | 32.13 |
| Arg | CCT | Contig15 | 1 | 16259..16184 | 0..0 | 75.27 | 58.66 |
| Arg | TCT | Contig75 | 4 | 2189..2113 | 0..0 | 86.86 | 63.33 |
| Asn | GTT | Contig17 | 1 | 682 ..756 | 0..0 | 93.98 | 68.31 |
| Asn | GTT | Contig29 | 1 | 35278..35204 | 0..0 | 92.72 | 66.29 |
| Asn | GTT | Contig2 | 19 | 25096..25022 | 0..0 | 92.72 | 66.29 |
| Asn | GTT | Contig51 | 1 | 2713 ..2639 | 0..0 | 92.72 | 66.29 |
| Asp | GTC | Contig17 | 6 | 1285 ..1360 | 0..0 | 83.67 | 62.91 |
| Asp | GTC | Contig2 | 3 | 27903..27828 | 0..0 | 83.67 | 62.91 |
| Asp | GTC | Contig51 | 4 | 2415 ..2340 | 0..0 | 83.67 | 62.91 |
| Cys | GCA | Contig17 | 14 | 2447 ..2520 | 0..0 | 75.46 | 47.22 |
| Gln | TTG | Contig17 | 12 | 2286 ..2360 | 0..0 | 76.27 | 51.13 |
| Gln | TTG | Contig29 | 4 | 34924..34850 | 0..0 | 78.95 | 52.28 |
| Gln | TTG | Contig51 | 5 | 2325 ..2251 | 0..0 | 78.84 | 52.07 |
| Gln | TTG | Contig62 | 1 | 74931 ..75002 | 0..0 | 46.40 | 37.67 |
| Glu | TTC | Contig17 | 3 | 866 ..937 | 0..0 | 71.01 | 45.96 |
| Glu | TTC | Contig29 | 3 | 35110..35039 | 0..0 | 71.01 | 45.96 |
| Glu | TTC | Contig2 | 21 | 24918..24847 | 0..0 | 71.01 | 45.96 |
| Glu | TTC | Contig51 | 3 | 2519 ..2448 | 0..0 | 71.01 | 45.96 |
| Glu | TTC | Contig72 | 12 | 16879 ..16808 | 0..0 | 71.01 | 45.96 |
| Gly | CCC | Contig75 | 3 | 2494..2424 | 0..0 | 70.24 | 46.52 |
| Gly | GCC | Contig17 | 13 | 2366 ..2437 | 0..0 | 86.63 | 64.90 |
| Gly | GCC | Contig29 | 6 | 34206..34135 | 0..0 | 86.63 | 64.90 |
| Gly | GCC | Contig2 | 7 | 26829..26755 | 0..0 | 91.70 | 69.95 |
| Gly | GCC | Contig72 | 4 | 55809 ..55735 | 0..0 | 94.07 | 72.32 |
| Gly | GCC | Contig75 | 1 | 2745..2674 | 0..0 | 84.74 | 63.01 |
| Gly | TCC | Contig2 | 17 | 25456..25386 | 0..0 | 73.06 | 49.35 |
| Gly | TCC | Contig51 | 11 | 1214 ..1141 | 0..0 | 81.36 | 57.62 |
| His | GTG | Contig17 | 11 | 2198 ..2270 | 0..0 | 65.72 | 40.72 |
| His | GTG | Contig2 | 16 | 25699..25627 | 0..0 | 65.72 | 40.72 |
| Ile | GAT | Contig2 | 18 | 25379..25306 | 0..0 | 89.49 | 68.24 |
| Ile | GAT | Contig62 | 8 | 128626..128699 | 0..0 | 89.49 | 68.24 |
| Ile | GAT | Contig72 | 9 | 52926 ..52853 | 0..0 | 89.49 | 68.24 |
| Leu | CAA | Contig17 | 15 | 2583 ..2668 | 0..0 | 65.44 | 38.61 |
| Leu | CAG | Contig72 | 3 | 55905 ..55821 | 0..0 | 64.20 | 41.36 |
| Leu | GAG | Contig51 | 8 | 1697 ..1615 | 0..0 | 55.38 | 23.77 |
| Leu | GAG | Contig62 | 4 | 127809..127891 | 0..0 | 58.09 | 25.27 |
| Leu | TAA | Contig2 | 8 | 26749..26664 | 0..0 | 75.22 | 46.29 |
| Leu | TAA | Contig72 | 5 | 55718 ..55633 | 0..0 | 73.30 | 44.37 |
| Leu | TAG | Contig51 | 7 | 1794 ..1713 | 0..0 | 72.77 | 48.52 |
| Lys | TTT | Contig29 | 5 | 34286..34211 | 0..0 | 95.56 | 71.36 |
| Lys | TTT | Contig2 | 6 | 26909..26837 | 0..0 | 87.26 | 63.08 |
| Lys | TTT | Contig51 | 6 | 1875 ..1800 | 0..0 | 95.56 | 71.36 |
| Lys | TTT | Contig72 | 2 | 55991 ..55916 | 0..0 | 95.56 | 71.36 |
| Met | CAT | Contig17 | 5 | 1203 ..1279 | 0..0 | 88.07 | 62.01 |
| Met | CAT | Contig2 | 12 | 26406..26330 | 0..0 | 89.90 | 74.06 |
| Met | CAT | Contig2 | 13 | 26324..26248 | 0..0 | 96.69 | 71.02 |
| Met | CAT | Contig2 | 2 | 27985..27909 | 0..0 | 88.07 | 62.01 |
| Met | CAT | Contig72 | 11 | 16968 ..16892 | 0..0 | 89.90 | 74.06 |
| Phe | GAA | Contig17 | 7 | 1694 ..1769 | 0..0 | 94.05 | 71.84 |
| Phe | GAA | Contig2 | 4 | 27510..27435 | 0..0 | 94.05 | 71.84 |
| Pro | CGG | Contig2 | 10 | 26578..26505 | 0..0 | 81.78 | 58.87 |
| Pro | CGG | Contig62 | 9 | 209351..209275 | 0..0 | 82.40 | 59.47 |
| Pro | GGG | Contig40 | 1 | 27186..27259 | 0..0 | 78.93 | 57.35 |
| Pro | TGG | Contig51 | 10 | 1457 ..1384 | 0..0 | 85.30 | 62.98 |
| Pro | TGG | Contig72 | 7 | 55551 ..55478 | 0..0 | 84.26 | 61.94 |
| Ser | CGA | Contig62 | 11 | 209185..209096 | 0..0 | 62.14 | 28.11 |
| Ser | CGA | Contig62 | 5 | 127909..128001 | 0..0 | 71.04 | 38.55 |
| Ser | GCT | Contig2 | 20 | 25015..24923 | 0..0 | 72.19 | 37.53 |
| Ser | GCT | Contig51 | 2 | 2631 ..2539 | 0..0 | 69.97 | 36.36 |
| Ser | GGA | Contig17 | 2 | 761 ..851 | 0..0 | 66.05 | 25.90 |
| Ser | TGA | Contig2 | 14 | 26228..26138 | 0..0 | 77.73 | 45.54 |
| Thr | CGT | Contig17 | 8 | 1931 ..2006 | 0..0 | 91.13 | 72.86 |
| Thr | CGT | Contig62 | 6 | 128444..128516 | 0..0 | 83.95 | 65.71 |
| Thr | GGT | Contig29 | 2 | 35196..35121 | 0..0 | 85.24 | 59.12 |
| Thr | TGT | Contig2 | 15 | 25782..25707 | 0..0 | 97.52 | 79.88 |
| Thr | TGT | Contig2 | 5 | 27290..27218 | 0..0 | 89.22 | 71.60 |
| Trp | CCA | Contig17 | 10 | 2107 ..2180 | 0..0 | 71.86 | 45.81 |
| Tyr | GTA | Contig17 | 9 | 2013 ..2097 | 0..0 | 80.04 | 53.73 |
| Tyr | GTA | Contig62 | 7 | 128534..128615 | 0..0 | 71.74 | 45.46 |
| Val | GAC | Contig33 | 1 | 97533..97604 | 0..0 | 72.05 | 45.41 |
| Val | GAC | Contig62 | 2 | 127652..127726 | 0..0 | 80.25 | 53.71 |
| Val | TAC | Contig17 | 4 | 947 ..1022 | 0..0 | 95.72 | 76.06 |
| Val | TAC | Contig2 | 1 | 28242..28167 | 0..0 | 95.72 | 76.06 |
| Val | TAC | Contig72 | 1 | 56480 ..56405 | 0..0 | 95.72 | 76.06 |
tRNA Models
Contig13.trna1 (6871-6799) Length: 73 bp
Type: Ala Anticodon: GGC at 34-36 (6838-6836) Score: 73.41
HMM Sc=53.44 Sec struct Sc=19.97
* | * | * | * | * | * | * |
Seq: GGGGCATTAGCTCAGTTGGGAGAGCGTCGTGCTGGCAGCGCGAAGGtCACCGGTTCGAGCCCGGTATGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig14.trna1 (49281-49352) Length: 72 bp
Type: Arg Anticodon: CCG at 34-36 (49314-49316) Score: 56.50
HMM Sc=32.13 Sec struct Sc=24.37
* | * | * | * | * | * | * |
Seq: GCCCTCGTAGTGTAGTGGAtAGCACGAGAGATTCCGGTTCTCTTAGCGTGGGTTCGAATCCTGCCGAGGGCG
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig15.trna1 (16259-16184) Length: 76 bp
Type: Arg Anticodon: CCT at 34-36 (16226-16224) Score: 75.27
HMM Sc=58.66 Sec struct Sc=16.61
* | * | * | * | * | * | * | *
Seq: GGCCCCGTAGCTCAGTGGAtAGAGCGTCGGTTTCCTAAACCGTGCGtCGGAGGTTCGAATCCTCTCGGGGCCGCTA
Str: >>>>>>>..>>>>........<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....
Contig17.trna1 (682-756) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (714-716) Score: 93.98
HMM Sc=68.31 Sec struct Sc=25.67
* | * | * | * | * | * | * |
Seq: TCCGCAGTAGCTCAGTGGTAGAGCAATCGGCTGTTAACCGATTGGtCGCAGGTTCGAATCCTGCCTGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig17.trna2 (761-851) Length: 91 bp
Type: Ser Anticodon: GGA at 35-37 (795-797) Score: 66.05
HMM Sc=25.90 Sec struct Sc=40.15
* | * | * | * | * | * | * | * | * |
Seq: GGAGAGCTGTCCGAGTGGTcgAAGGAGCACGATTGGAAATCGTGTAGGCGTGAATaGCGCCTCAAGGGTTCGAATCCCTTGCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>>>.....<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig17.trna3 (866-937) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (899-901) Score: 71.01
HMM Sc=45.96 Sec struct Sc=25.05
* | * | * | * | * | * | * |
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig17.trna4 (947-1022) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (980-982) Score: 95.72
HMM Sc=76.06 Sec struct Sc=19.66
* | * | * | * | * | * | * | *
Seq: GGAGGATTAGCTCAGCTGGGAGAGCACTTGCCTTACAAGCAAGGGGtCGGCGGTTCGATCCCGTCATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig17.trna5 (1203-1279) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (1237-1239) Score: 88.07
HMM Sc=62.01 Sec struct Sc=26.06
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGTCcGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig17.trna6 (1285-1360) Length: 76 bp
Type: Asp Anticodon: GTC at 34-36 (1318-1320) Score: 83.67
HMM Sc=62.91 Sec struct Sc=20.76
* | * | * | * | * | * | * | *
Seq: GGTCCCGTAGTGTAGTGGTtAACATGCCTGCCTGTCACGCAGGAGAtCGCGGGTTCGAGTCCCGTCGGGACCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig17.trna7 (1694-1769) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (1727-1729) Score: 94.05
HMM Sc=71.84 Sec struct Sc=22.21
* | * | * | * | * | * | * | *
Seq: GGCTCGGTAGCTCAGTCGGTAGAGCAAAGGACTGAAAATCCTTGTGtCGGCGGTTCGATTCCGTCCCGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig17.trna8 (1931-2006) Length: 76 bp
Type: Thr Anticodon: CGT at 34-36 (1964-1966) Score: 91.13
HMM Sc=72.86 Sec struct Sc=18.27
* | * | * | * | * | * | * | *
Seq: GCCGACTTAGCTCAATTGGTAGAGCAACTGAATCGTAATCAGTAGGtTGCGGGTTCAAGTCCTGCAGTCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig17.trna9 (2013-2097) Length: 85 bp
Type: Tyr Anticodon: GTA at 35-37 (2047-2049) Score: 80.04
HMM Sc=53.73 Sec struct Sc=26.31
* | * | * | * | * | * | * | * |
Seq: GGAGGGGTAGCGAAGTGGCtaAACGCGGCGGACTGTAAATCCGCTCCCTTTGGGTtCGGCGGTTCGAATCCGTCCCCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....
Contig17.trna10 (2107-2180) Length: 74 bp
Type: Trp Anticodon: CCA at 33-35 (2139-2141) Score: 71.86
HMM Sc=45.81 Sec struct Sc=26.05
* | * | * | * | * | * | * |
Seq: AGGGGCATAGTTTAATGGTAGAACAGAGGTCTCCAAAACCTCCGGTGTGGGTTCGATTCCTACTGCCCCTGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig17.trna11 (2198-2270) Length: 73 bp
Type: His Anticodon: GTG at 34-36 (2231-2233) Score: 65.72
HMM Sc=40.72 Sec struct Sc=25.00
* | * | * | * | * | * | * |
Seq: GCGACTATGGCGAAGTGGTtAACGCACCAGATTGTGGCTCTGGCATgCGTGGGTTCGATTCCCACTAGTCGCC
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig17.trna12 (2286-2360) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (2318-2320) Score: 76.27
HMM Sc=51.13 Sec struct Sc=25.14
* | * | * | * | * | * | * |
Seq: TGGGGTATAGCCAAGCGGTAAGGCAACGGACTTTGACTCCGTGATgCGTTGGTTCGAATCCAGCTACCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig17.trna13 (2366-2437) Length: 72 bp
Type: Gly Anticodon: GCC at 33-35 (2398-2400) Score: 86.63
HMM Sc=64.90 Sec struct Sc=21.73
* | * | * | * | * | * | * |
Seq: GCGGAAGTAGTTCAGTGGTAGAACACCACCTTGCCAAGGTGGGGGtCGCGGGTTCGAGTCCCGTCTTCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig17.trna14 (2447-2520) Length: 74 bp
Type: Cys Anticodon: GCA at 33-35 (2479-2481) Score: 75.46
HMM Sc=47.22 Sec struct Sc=28.24
* | * | * | * | * | * | * |
Seq: GGCGGCATAGCCAAGTGGTAAGGCAGAGGTCTGCAAAACCTTTACCCCCGGTTCGAATCCGGGTGCCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig17.trna15 (2583-2668) Length: 86 bp
Type: Leu Anticodon: CAA at 35-37 (2617-2619) Score: 65.44
HMM Sc=38.61 Sec struct Sc=26.83
* | * | * | * | * | * | * | * | *
Seq: GCCGATGTGGCGGAATTGGCaGACGCGCACGACTCAAAATCGTGTGGGGTAGCCCCCCCGTGTGGGTTCGACTCCCACCATCGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>..>.<..<<<..>>>>>.......<<<<<<<<<<<<.
Contig2.trna1 (28242-28167) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (28209-28207) Score: 95.72
HMM Sc=76.06 Sec struct Sc=19.66
* | * | * | * | * | * | * | *
Seq: GGAGGATTAGCTCAGCTGGGAGAGCACTTGCCTTACAAGCAAGGGGtCGGCGGTTCGATCCCGTCATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna2 (27985-27909) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (27951-27949) Score: 88.07
HMM Sc=62.01 Sec struct Sc=26.06
* | * | * | * | * | * | * | *
Seq: CGCGGGGTGGAGCAGTCcGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGCAGGTTCAAATCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....
Contig2.trna3 (27903-27828) Length: 76 bp
Type: Asp Anticodon: GTC at 34-36 (27870-27868) Score: 83.67
HMM Sc=62.91 Sec struct Sc=20.76
* | * | * | * | * | * | * | *
Seq: GGTCCCGTAGTGTAGTGGTtAACATGCCTGCCTGTCACGCAGGAGAtCGCGGGTTCGAGTCCCGTCGGGACCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna4 (27510-27435) Length: 76 bp
Type: Phe Anticodon: GAA at 34-36 (27477-27475) Score: 94.05
HMM Sc=71.84 Sec struct Sc=22.21
* | * | * | * | * | * | * | *
Seq: GGCTCGGTAGCTCAGTCGGTAGAGCAAAGGACTGAAAATCCTTGTGtCGGCGGTTCGATTCCGTCCCGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna5 (27290-27218) Length: 73 bp
Type: Thr Anticodon: TGT at 34-36 (27257-27255) Score: 89.22
HMM Sc=71.60 Sec struct Sc=17.62
* | * | * | * | * | * | * |
Seq: GCCGGCTTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGtTGCGGGTTCAAGTCCTGCAGCCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2.trna6 (26909-26837) Length: 73 bp
Type: Lys Anticodon: TTT at 34-36 (26876-26874) Score: 87.26
HMM Sc=63.08 Sec struct Sc=24.18
* | * | * | * | * | * | * |
Seq: GAGCCATTAGCTCAGTAGGTAGAGCATCTGACTTTTAATCAGAGGGtCGGAGGTTCGAGTCCTCCATGGCTCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2.trna7 (26829-26755) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (26797-26795) Score: 91.70
HMM Sc=69.95 Sec struct Sc=21.75
* | * | * | * | * | * | * |
Seq: GCGGAAGTAGTTCAGCGGTAGAACACCACCTTGCCAAGGTGGGGGtCGCGGGTTCGAGCCCCGTCTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna8 (26749-26664) Length: 86 bp
Type: Leu Anticodon: TAA at 35-37 (26715-26713) Score: 75.22
HMM Sc=46.29 Sec struct Sc=28.93
* | * | * | * | * | * | * | * | *
Seq: GCCGGGGTGGCGGAATTGGCaGACGCACAGGACTTAAAATCCTGGGGTAGGTAACTACCGTGCCGGTTCGAGTCCGGCCCTCGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.
Contig2.trna9 (26658-26585) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (26624-26622) Score: 75.36
HMM Sc=55.23 Sec struct Sc=20.13
* | * | * | * | * | * | * |
Seq: GCGCTCGTAGCTCAATTGGAtAGAGCATCTGACTACGGATCAGAAGGtTAGGGGTTCGAATCCTCTCGAGCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2.trna10 (26578-26505) Length: 74 bp
Type: Pro Anticodon: CGG at 35-37 (26544-26542) Score: 81.78
HMM Sc=58.87 Sec struct Sc=22.91
* | * | * | * | * | * | * |
Seq: CGGGAAGTAGCTCAGCTtGGTAGAGCACACGGTTCGGGTCCGTGAGGtCGCAGGTTCAAATCCTGTCTTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2.trna11 (26496-26421) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (26463-26461) Score: 86.29
HMM Sc=68.28 Sec struct Sc=18.01
* | * | * | * | * | * | * | *
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGAGGtCATCGGTTCGATCCCGATAGGCTCCACCT
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna12 (26406-26330) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (26372-26370) Score: 89.90
HMM Sc=74.06 Sec struct Sc=15.84
* | * | * | * | * | * | * | *
Seq: GGCGGTGTAGCTCAGCTGGCtAGAGCGTACGGTTCATACCCGTGAGGtCGGGGGTTCGATCCCCTCCACCGCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna13 (26324-26248) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (26290-26288) Score: 96.69
HMM Sc=71.02 Sec struct Sc=25.67
* | * | * | * | * | * | * | *
Seq: GGACCTTTAGCTCAGCTGGTtAGAGCAGACGGCTCATAACCGTCCGGtCGTAGGTTCGAGTCCTACAAGGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna14 (26228-26138) Length: 91 bp
Type: Ser Anticodon: TGA at 35-37 (26194-26192) Score: 77.73
HMM Sc=45.54 Sec struct Sc=32.19
* | * | * | * | * | * | * | * | * |
Seq: GGAGGAGTACCCAAGTGGTtgAAGGGGTCGGTCTTGAAAACCGAGAGGCGTCGCAAGGCGCGCGGGGGTTCGAATCCCTCCTCCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig2.trna15 (25782-25707) Length: 76 bp
Type: Thr Anticodon: TGT at 34-36 (25749-25747) Score: 97.52
HMM Sc=79.88 Sec struct Sc=17.64
* | * | * | * | * | * | * | *
Seq: GCCGGCTTAGCTCAATTGGTAGAGCAACTGACTTGTAATCAGTAGGtTGCGGGTTCAAGTCCTGCAGCCGGCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna16 (25699-25627) Length: 73 bp
Type: His Anticodon: GTG at 34-36 (25666-25664) Score: 65.72
HMM Sc=40.72 Sec struct Sc=25.00
* | * | * | * | * | * | * |
Seq: GCGACTATGGCGAAGTGGTtAACGCACCAGATTGTGGCTCTGGCATgCGTGGGTTCGATTCCCACTAGTCGCC
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2.trna17 (25456-25386) Length: 71 bp
Type: Gly Anticodon: TCC at 33-35 (25424-25422) Score: 73.06
HMM Sc=49.35 Sec struct Sc=23.71
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGTTTAGTGGTAAAACCTCAGCCTTCCAAGCTGATGtCGTGGGTTCGATTCCCATCACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig2.trna18 (25379-25306) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (25345-25343) Score: 89.49
HMM Sc=68.24 Sec struct Sc=21.25
* | * | * | * | * | * | * |
Seq: GGGCCTATAGCTCAGCTGGTcAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCAAGTCCACTTAGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig2.trna19 (25096-25022) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (25064-25062) Score: 92.72
HMM Sc=66.29 Sec struct Sc=26.43
* | * | * | * | * | * | * |
Seq: TCCGCAATAGCTCAGCGGTAGAGCAACCGGCTGTTAACCGGTAGGtCGTAGGTTCGAATCCTACTTGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig2.trna20 (25015-24923) Length: 93 bp
Type: Ser Anticodon: GCT at 35-37 (24981-24979) Score: 72.19
HMM Sc=37.53 Sec struct Sc=34.66
* | * | * | * | * | * | * | * | * |
Seq: GGAGAAGTACCCAAGTGGCtgAAGGGGACGGTTTGCTAAACCGTTAGGTCGCAGTTtTGCGGCGCGCGGGTTCAAATCCCGCCTTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>>....<<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig2.trna21 (24918-24847) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (24885-24883) Score: 71.01
HMM Sc=45.96 Sec struct Sc=25.05
* | * | * | * | * | * | * |
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig29.trna1 (35278-35204) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (35246-35244) Score: 92.72
HMM Sc=66.29 Sec struct Sc=26.43
* | * | * | * | * | * | * |
Seq: TCCGCAATAGCTCAGCGGTAGAGCAACCGGCTGTTAACCGGTAGGtCGTAGGTTCGAATCCTACTTGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig29.trna2 (35196-35121) Length: 76 bp
Type: Thr Anticodon: GGT at 34-36 (35163-35161) Score: 85.24
HMM Sc=59.12 Sec struct Sc=26.12
* | * | * | * | * | * | * | *
Seq: GCTTCCATAGCTCAGTAGGTAGAGCACTTCCATGGTAAGGAAGAGGtCACCGGTTCGAGCCCGGTTGGAAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig29.trna3 (35110-35039) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (35077-35075) Score: 71.01
HMM Sc=45.96 Sec struct Sc=25.05
* | * | * | * | * | * | * |
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig29.trna4 (34924-34850) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (34892-34890) Score: 78.95
HMM Sc=52.28 Sec struct Sc=26.67
* | * | * | * | * | * | * |
Seq: TGGGCTATAGCCAAGCGGTAAGGCAACGGACTTTGACTCCGTGATgCGCTGGTTCGAATCCAGCTAGCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig29.trna5 (34286-34211) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (34253-34251) Score: 95.56
HMM Sc=71.36 Sec struct Sc=24.20
* | * | * | * | * | * | * | *
Seq: GAGCCATTAGCTCAGTAGGTAGAGCATCTGACTTTTAATCAGAGGGtCGGAGGTTCGAGTCCTCCATGGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig29.trna6 (34206-34135) Length: 72 bp
Type: Gly Anticodon: GCC at 33-35 (34174-34172) Score: 86.63
HMM Sc=64.90 Sec struct Sc=21.73
* | * | * | * | * | * | * |
Seq: GCGGAAGTAGTTCAGTGGTAGAACACCACCTTGCCAAGGTGGGGGtCGCGGGTTCGAGTCCCGTCTTCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig29.trna7 (34128-34053) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (34095-34093) Score: 84.52
HMM Sc=66.51 Sec struct Sc=18.01
* | * | * | * | * | * | * | *
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCATCGGTTCGATCCCGATAGGCTCCATCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig33.trna1 (97533-97604) Length: 72 bp
Type: Val Anticodon: GAC at 33-35 (97565-97567) Score: 72.05
HMM Sc=45.41 Sec struct Sc=26.64
* | * | * | * | * | * | * |
Seq: GACCTGTTAGCTCAGTGGGAGAGCACTTCCTTGACAGGGAAGGGGtCGGGGGTTCAAATCCCTCACAGGTCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig40.trna1 (27186-27259) Length: 74 bp
Type: Pro Anticodon: GGG at 35-37 (27220-27222) Score: 78.93
HMM Sc=57.35 Sec struct Sc=21.58
* | * | * | * | * | * | * |
Seq: CGGGATGTAGCTCAGCTtGGTAGAGCACACGCATGGGGTGCGTGGGGtCGCAGGTTCAAATCCTGTCATCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig51.trna1 (2713-2639) Length: 75 bp
Type: Asn Anticodon: GTT at 33-35 (2681-2679) Score: 92.72
HMM Sc=66.29 Sec struct Sc=26.43
* | * | * | * | * | * | * |
Seq: TCCGCAATAGCTCAGCGGTAGAGCAACCGGCTGTTAACCGGTAGGtCGTAGGTTCGAATCCTACTTGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig51.trna2 (2631-2539) Length: 93 bp
Type: Ser Anticodon: GCT at 35-37 (2597-2595) Score: 69.97
HMM Sc=36.36 Sec struct Sc=33.61
* | * | * | * | * | * | * | * | * |
Seq: GGAGAAGTACCCAAGTGGCtgAAGGGGACGGTTTGCTAAACCGTTAGGTCGTGGCTtTACGGCGCGCGGGTTCAAATCCCGCCTTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>>....<<<<<<..>>>>>.......<<<<<<<<<<<<....
Contig51.trna3 (2519-2448) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (2486-2484) Score: 71.01
HMM Sc=45.96 Sec struct Sc=25.05
* | * | * | * | * | * | * |
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig51.trna4 (2415-2340) Length: 76 bp
Type: Asp Anticodon: GTC at 34-36 (2382-2380) Score: 83.67
HMM Sc=62.91 Sec struct Sc=20.76
* | * | * | * | * | * | * | *
Seq: GGTCCCGTAGTGTAGTGGTtAACATGCCTGCCTGTCACGCAGGAGAtCGCGGGTTCGAGTCCCGTCGGGACCGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig51.trna5 (2325-2251) Length: 75 bp
Type: Gln Anticodon: TTG at 33-35 (2293-2291) Score: 78.84
HMM Sc=52.07 Sec struct Sc=26.77
* | * | * | * | * | * | * |
Seq: TGGGCCATAGCCAAGCGGTAAGGCAACGGACTTTGACTCCGTGATgCGCTGGTTCGAATCCAGCTGGCCCAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig51.trna6 (1875-1800) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (1842-1840) Score: 95.56
HMM Sc=71.36 Sec struct Sc=24.20
* | * | * | * | * | * | * | *
Seq: GAGCCATTAGCTCAGTAGGTAGAGCATCTGACTTTTAATCAGAGGGtCGGAGGTTCGAGTCCTCCATGGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig51.trna7 (1794-1713) Length: 82 bp
Type: Leu Anticodon: TAG at 35-37 (1760-1758) Score: 72.77
HMM Sc=48.52 Sec struct Sc=24.25
* | * | * | * | * | * | * | * |
Seq: GCGGGTGTGGCGGAATTGGCaGACGCACCAGACTTAGGATCTGGCGCCTCACGGCGTGGGGGTTCAAGTCCCTCCACCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<.
Contig51.trna8 (1697-1615) Length: 83 bp
Type: Leu Anticodon: GAG at 34-36 (1664-1662) Score: 55.38
HMM Sc=23.77 Sec struct Sc=31.61
* | * | * | * | * | * | * | * |
Seq: GCGGTCGTGGCGGAATGGCaGACGCGCTAGGTTGAGGGCCTAGTGGGGGCGACCCCGTGGAGGTTCAAGTCCTCTCGACCGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>.><.<<<<..>>>>>.......<<<<<<<<<<<<.
Contig51.trna9 (1538-1462) Length: 77 bp
Type: Arg Anticodon: ACG at 35-37 (1504-1502) Score: 83.65
HMM Sc=63.51 Sec struct Sc=20.14
* | * | * | * | * | * | * | *
Seq: GCGCTCGTAGCTCAATTGGAtAGAGCATCTGACTACGGATCAGAAGGtTAGGGGTTCGAATCCTCTCGAGCGCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig51.trna10 (1457-1384) Length: 74 bp
Type: Pro Anticodon: TGG at 35-37 (1423-1421) Score: 85.30
HMM Sc=62.98 Sec struct Sc=22.32
* | * | * | * | * | * | * |
Seq: CGGGAAGTAGCTCAGCTtGGTAGAGCACATGGTTTGGGACCATGGGGtCGCAGGTTCAAATCCTGTCTTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig51.trna11 (1214-1141) Length: 74 bp
Type: Gly Anticodon: TCC at 33-35 (1182-1180) Score: 81.36
HMM Sc=57.62 Sec struct Sc=23.74
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGTTTAGTGGTAAAACCTCAGCCTTCCAAGCTGATGtCGTGGGTTCGATTCCCATCACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....
Contig62.trna1 (74931-75002) Length: 72 bp
Type: Gln Anticodon: TTG at 33-35 (74963-74965) Score: 46.40
HMM Sc=37.67 Sec struct Sc=8.73
* | * | * | * | * | * | * |
Seq: TGGGCTATAGCCAAGCGGTAAGGCAACGGACTTTGACTCCGTGATgCGCTGGTTCGAATCCAGCTATATAGA
Str: >.>..>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<..<.<.
Contig62.trna2 (127652-127726) Length: 75 bp
Type: Val Anticodon: GAC at 33-35 (127684-127686) Score: 80.25
HMM Sc=53.71 Sec struct Sc=26.54
* | * | * | * | * | * | * |
Seq: GGAGTATTAGCTCAGCGGGAGAGCACCACGTTGACAGCGTGGGGGtCACTGGTTCGATCCCAGTATACTCCACCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig62.trna3 (127731-127802) Length: 72 bp
Type: Ala Anticodon: GGC at 33-35 (127763-127765) Score: 71.62
HMM Sc=49.16 Sec struct Sc=22.46
* | * | * | * | * | * | * |
Seq: GGGGCGTTAGTTCAGGGGGAGAACGCTTCGCTGGCAGCGAAGAGGtCAGGGGTTCAAATCCCCTACGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig62.trna4 (127809-127891) Length: 83 bp
Type: Leu Anticodon: GAG at 34-36 (127842-127844) Score: 58.09
HMM Sc=25.27 Sec struct Sc=32.82
* | * | * | * | * | * | * | * |
Seq: GCGGTCGTGGCGGAATGGCaGACGCGCTAGGTTGAGGGCCTAGTGGGGGCAACCCCGTGGAGGTTCAAGTCCTCTCGACCGCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>....<<<<..>>>>>.......<<<<<<<<<<<<.
Contig62.trna5 (127909-128001) Length: 93 bp
Type: Ser Anticodon: CGA at 37-39 (127945-127947) Score: 71.04
HMM Sc=38.55 Sec struct Sc=32.49
* | * | * | * | * | * | * | * | * |
Seq: GGAGGAGTACCCAAGTCtGGCtgAAGGGGTCGGTTTCGAAAACCGATAGGGGTGTCACAGCCCGCGGGGGTTCGAATCCCTCCTCCTCCGCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>.>>...<<.<<<..>>>>>.......<<<<<<<<<<<<....
Contig62.trna6 (128444-128516) Length: 73 bp
Type: Thr Anticodon: CGT at 34-36 (128477-128479) Score: 83.95
HMM Sc=65.71 Sec struct Sc=18.24
* | * | * | * | * | * | * |
Seq: GCCGACTTAGCTCAATTGGTAGAGCAACTGAATCGTAATCAGTAGGtTGCGGGTTCGAGTCCTGCAGTCGGCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig62.trna7 (128534-128615) Length: 82 bp
Type: Tyr Anticodon: GTA at 35-37 (128568-128570) Score: 71.74
HMM Sc=45.46 Sec struct Sc=26.28
* | * | * | * | * | * | * | * |
Seq: GGAGGGGTAGCGAAGTGGCtaAACGCGGCGGACTGTAAATCCGCTCCCTTTGGGTtCGGCGGTTCGAATCCGTCCCCCTCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<.
Contig62.trna8 (128626-128699) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (128660-128662) Score: 89.49
HMM Sc=68.24 Sec struct Sc=21.25
* | * | * | * | * | * | * |
Seq: GGGCCTATAGCTCAGCTGGTcAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCAAGTCCACTTAGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig62.trna9 (209351-209275) Length: 77 bp
Type: Pro Anticodon: CGG at 35-37 (209317-209315) Score: 82.40
HMM Sc=59.47 Sec struct Sc=22.93
* | * | * | * | * | * | * | *
Seq: CGGGAAGTAGCTCAGCTtGGTAGAGCACACGGTTCGGGTCCGTGAGGtCGCAGGTTCAAATCCTGTCTTCCCGATCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig62.trna10 (209267-209195) Length: 73 bp
Type: Ala Anticodon: CGC at 34-36 (209234-209232) Score: 79.60
HMM Sc=61.62 Sec struct Sc=17.98
* | * | * | * | * | * | * |
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCCCCGCACGCAGGAGGtCATCGGTTCGAATCCGATAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig62.trna11 (209185-209096) Length: 90 bp
Type: Ser Anticodon: CGA at 37-39 (209149-209147) Score: 62.14
HMM Sc=28.11 Sec struct Sc=34.03
* | * | * | * | * | * | * | * | *
Seq: GGAGGAATACCCAAGTCtGGCtgAAGGGGGCGGTTTCGAAAACCGCTAGGGGTGTCACAGCCCGCGGGGGTTCGAATCCCTCTTCCTCCA
Str: >>>>>>>..>>>.............<<<.>>>>>.......<<<<<..>>>.>>...<<.<<<..>>>>>.......<<<<<<<<<<<<.
Contig72.trna1 (56480-56405) Length: 76 bp
Type: Val Anticodon: TAC at 34-36 (56447-56445) Score: 95.72
HMM Sc=76.06 Sec struct Sc=19.66
* | * | * | * | * | * | * | *
Seq: GGAGGATTAGCTCAGCTGGGAGAGCACTTGCCTTACAAGCAAGGGGtCGGCGGTTCGATCCCGTCATCCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig72.trna2 (55991-55916) Length: 76 bp
Type: Lys Anticodon: TTT at 34-36 (55958-55956) Score: 95.56
HMM Sc=71.36 Sec struct Sc=24.20
* | * | * | * | * | * | * | *
Seq: GAGCCATTAGCTCAGTAGGTAGAGCATCTGACTTTTAATCAGAGGGtCGGAGGTTCGAGTCCTCCATGGCTCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig72.trna3 (55905-55821) Length: 85 bp
Type: Leu Anticodon: CAG at 35-37 (55871-55869) Score: 64.20
HMM Sc=41.36 Sec struct Sc=22.84
* | * | * | * | * | * | * | * |
Seq: GCGGGTGTGGCGGAATTGGCaGACGCGCTAGATTCAGGGTCTAGTGCCCTTTACGGGCGTGGGGGTTCGAGTCCCTTCACCCGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>.....<<<<..>>>>>.......<<<<<<<<<<<<.
Contig72.trna4 (55809-55735) Length: 75 bp
Type: Gly Anticodon: GCC at 33-35 (55777-55775) Score: 94.07
HMM Sc=72.32 Sec struct Sc=21.75
* | * | * | * | * | * | * |
Seq: GCGGAAGTAGTTCAGCGGTAGAACACCACCTTGCCAAGGTGGGGGtCGCGGGTTCGAGTCCCGTCTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig72.trna5 (55718-55633) Length: 86 bp
Type: Leu Anticodon: TAA at 35-37 (55684-55682) Score: 73.30
HMM Sc=44.37 Sec struct Sc=28.93
* | * | * | * | * | * | * | * | *
Seq: GCCGGGGTGGCGGAATTGGCaGACGCACAGGACTTAAAATCCTGGGGTAGGTCACTACCGTGCCGGTTCGAGTCCGGCCCTCGGCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<.
Contig72.trna6 (55629-55556) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (55595-55593) Score: 75.36
HMM Sc=55.23 Sec struct Sc=20.13
* | * | * | * | * | * | * |
Seq: GCGCTCGTAGCTCAATTGGAtAGAGCATCTGACTACGGATCAGAAGGtTAGGGGTTCGAATCCTCTCGAGCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig72.trna7 (55551-55478) Length: 74 bp
Type: Pro Anticodon: TGG at 35-37 (55517-55515) Score: 84.26
HMM Sc=61.94 Sec struct Sc=22.32
* | * | * | * | * | * | * |
Seq: CGGGAAGTAGCTCAGTTtGGCAGAGCACATGGTTTGGGACCATGGGGtCGCAGGTTCAAATCCTGTCTTCCCGA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig72.trna8 (55465-55393) Length: 73 bp
Type: Ala Anticodon: TGC at 34-36 (55432-55430) Score: 81.81
HMM Sc=63.82 Sec struct Sc=17.99
* | * | * | * | * | * | * |
Seq: GGGGCCTTAGCTCAGCCGGGAGAGCGCCTGCTTTGCACGCAGGAGGtCATCGGTTCGATCCCGATAGGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig72.trna9 (52926-52853) Length: 74 bp
Type: Ile Anticodon: GAT at 35-37 (52892-52890) Score: 89.49
HMM Sc=68.24 Sec struct Sc=21.25
* | * | * | * | * | * | * |
Seq: GGGCCTATAGCTCAGCTGGTcAGAGCGCACGCCTGATAAGCGTGAGGtCGGTGGTTCAAGTCCACTTAGGCCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig72.trna10 (52846-52771) Length: 76 bp
Type: Ala Anticodon: TGC at 34-36 (52813-52811) Score: 93.97
HMM Sc=75.96 Sec struct Sc=18.01
* | * | * | * | * | * | * | *
Seq: GGGGCCTTAGCTCAGCTGGGAGAGCGCCTGCTTTGCAAGCAGGAGGtCATCGGTTCGATCCCGATAGGCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig72.trna11 (16968-16892) Length: 77 bp
Type: Met Anticodon: CAT at 35-37 (16934-16932) Score: 89.90
HMM Sc=74.06 Sec struct Sc=15.84
* | * | * | * | * | * | * | *
Seq: GGCGGTGTAGCTCAGCTGGCtAGAGCGTACGGTTCATACCCGTGAGGtCGGGGGTTCGATCCCCTCCACCGCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
Contig72.trna12 (16879-16808) Length: 72 bp
Type: Glu Anticodon: TTC at 34-36 (16846-16844) Score: 71.01
HMM Sc=45.96 Sec struct Sc=25.05
* | * | * | * | * | * | * |
Seq: GGCCCGTTGGTCAAGTGGTtAAGACACCGCCCTTTCACGGCGGTAACACGGGTTCGAATCCCGTACGGGTCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig75.trna1 (2745-2674) Length: 72 bp
Type: Gly Anticodon: GCC at 33-35 (2713-2711) Score: 84.74
HMM Sc=63.01 Sec struct Sc=21.73
* | * | * | * | * | * | * |
Seq: GCGGAAGTAGTTCAGTGGCAGAACACCACCTTGCCAAGGTGGGGGtCGCGGGTTCGAGTCCCGTCTTCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig75.trna2 (2663-2590) Length: 74 bp
Type: Arg Anticodon: ACG at 35-37 (2629-2627) Score: 75.36
HMM Sc=55.23 Sec struct Sc=20.13
* | * | * | * | * | * | * |
Seq: GCGCTCGTAGCTCAATTGGAtAGAGCATCTGACTACGGATCAGAAGGtTAGGGGTTCGAATCCTCTCGAGCGCG
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<.
Contig75.trna3 (2494-2424) Length: 71 bp
Type: Gly Anticodon: CCC at 33-35 (2462-2460) Score: 70.24
HMM Sc=46.52 Sec struct Sc=23.72
* | * | * | * | * | * | * |
Seq: GCGGGTGTAGTTTAATGGTAAAACCTCAGCTTCCCAAGCTGAAGtCGTGGGTTCGATTCCCATCACCCGCT
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<.
Contig75.trna4 (2189-2113) Length: 77 bp
Type: Arg Anticodon: TCT at 35-37 (2155-2153) Score: 86.86
HMM Sc=63.33 Sec struct Sc=23.53
* | * | * | * | * | * | * | *
Seq: GTCCCAGTAGCTCAGTAGGAtAGAGCAGCGGCCTTCTAAGCCGTCGGtCGGGAGTTCGAGTCTCTCCTGGGACGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....
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