Reference SNP(refSNP) Cluster Report: rs580699

Reference SNP(refSNP) Cluster Report: rs580699

refSNP ID: rs580699
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	83/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	G
Clinical Association:	unknown

HGVS Names
NM_006112.2:c.131-528A>G
NM_203456.1:c.131-528A>G
NM_203457.1:c.-68-528A>G
NT_032977.8:g.10178428A>G

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss3258841 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs580699 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss752239	SC_JCM\|AL354888.5_48618	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	07/27/00	04/07/04	83	Genomic	unknown
ss935707	KWOK\|OVLP-000804-317914	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	09/01/00	10/10/03	86	Genomic	99 %
ss1024698	KWOK\|OVLP-000804-321999	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	09/02/00	10/10/03	86	Genomic	97 %
ss1598641	KWOK\|OVLP-000925-334639	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	10/04/00	10/10/03	87	Genomic	99 %
ss1638323	KWOK\|OVLP-000925-340821	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	10/04/00	10/10/03	87	Genomic	97 %
ss3258841	TSC-CSHL\|TSC1341747	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	09/20/01	04/07/04	100	Genomic	unknown
ss5848478	SC_JCM\|NT_004852.12_897354	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	01/10/03	10/10/03	111	Genomic	unknown
ss9902107	BCM_SSAHASNP\|chr1.NT_077386.2_1813531	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	06/27/03	10/10/03	116	Genomic	unknown
ss11428025	WI_SSAHASNP\|chr1.NT_077386.2_1813531	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	07/03/03	10/10/03	116	Genomic	unknown
ss17349210	CSHL-HAPMAP\|CSHL-HuCC-200402.chr1.NT_032977.6_1812957	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	02/19/04	03/04/04	120	Genomic	unknown
ss19850010	CSHL-HAPMAP\|CSHL-HuFF-200402.chr1.NT_032977.6_1812957	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	02/21/04	03/04/04	120	Genomic	unknown
ss20584712	SSAHASNP\|WGSA-200403-chr1.chr1.NT_032977.6_1812957	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	03/18/04	03/18/04	121	Genomic	unknown
ss44070861	ABI\|hCV819780	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	07/18/05	07/18/05	126	Genomic	unknown
ss66782963	ILLUMINA\|HumanHap300v1.1_rs580699	fwd/B	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	11/09/06	11/09/06	127	Genomic	unknown
ss67422346	ILLUMINA\|HumanHap550v1.1_rs580699	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	11/14/06	11/14/06	127	Genomic	unknown
ss67782523	ILLUMINA\|HumanHap650Yv1.0_rs580699	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	11/14/06	11/14/06	127	Genomic	unknown
ss68396229	CSHL-HAPMAP\|sanger:assay:438062:1	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	01/11/07	01/16/07	127	NA	unknown
ss70848040	ILLUMINA\|HumanHap550v3.0__rs580699	rev/B	C/T	cataaccttatcattttgcaaataaagatt	cccaggcccagagagtttaaagactttgct	04/20/07	03/31/08	130	Genomic	unknown
ss71432944	ILLUMINA\|HumanHap650Yv3.0_rs580699	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	04/23/07	04/23/07	127	Genomic	unknown
ss75798590	ILLUMINA\|ILMN_Human_1M_rs580699	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	08/28/07	08/29/07	129	Genomic	unknown
ss77639313	HGSV\|Cor12156_SNV_20070510.chr1_39875603	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	10/09/07	10/14/07	129	Genomic	unknown
ss79210231	ILLUMINA\|HumanHap300v2.0_rs580699	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	04/18/07	11/18/07	130	Genomic	unknown
ss83489005	KRIBB_YJKIM\|KHS473655	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	12/04/07	12/05/07	130	Genomic	unknown
ss83895920	HGSV\|Cor18956_SNV_20070510.chr1_39875603	fwd/T	A/G	agcaaagtctttaaactctctgggcctggg	aatctttatttgcaaaatgataaggttatg	11/30/07	12/06/07	130	Genomic	unknown

Fasta sequence (Legend)

 TCTAAATATG CATTCTAAAT ATGGTTAGTA TACACTACAG GTAAGTTCAG GAAGGTGTCT
 GGTGACAGTG ATCTCGATGG AGAAGGAATG TTCTGAGGCC ATGTGGTTGT GAACTCTGAA
 TACTTTCCAG AGTCTTCAGC TGTTGGGTTG AGATAAGACA GATTTTTCAA TAGACCAGTA
 GGGAGATAGG TTTGAACTAC ATTGAGATTT GAATGTTGTT TTAATCTACC TGATGGGTAC
 CCCATCCCAC CTGCACCTTC TTGCAGCTGT GCTATTAAAT GAGGCAGCGG GAAAGCCTAG
 CCCCATAATG GGGGTGGGTG AGGGCGGGGG TTCTTGGCCT CTGCACCCCT GGGTGGGTTT
 CCCATCGATT GGTATCACAA CCACAGTTCA GTTTTCTGTT TACCTTTGTT GTCATTTTTA
 AGATTATAGT TTTAGGCCTA GTTTTATCAT CAACCTTGCA TATGATTGTT AGCAAAGTCT
 TTAAACTCTC TGGGCCTGGG
 R
 AATCTTTATT TGCAAAATGA TAAGGTTATG TTGGCTTTCT AAGGGCCTTC TAGTCTCTGA
 GTTCTATGAT AAACATTATT GTGCTTGGTC TTTCTAGTTA GTTCAGCATT TTCC

GeneView

GeneView via analysis of contig annotation: PPIE peptidylprolyl isomerase E (cyclophilin E)

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_032977->NM_006112

function

reference

NT_032977->NM_203456

function

reference

NT_032977->NM_203457

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_032977->NM_006112->NP_006103	10178428	forward	intron

reference	NT_032977->NM_203456->NP_982281	10178428	forward	intron

reference	NT_032977->NM_203457->NP_982282	10178428	forward	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs580699 maps exactly once on NCBI human chromosome 1

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
1	NW_001838577.2	2943303	38325195	minus	C	alt_assembly_8	HuRef	HuRef	view	500
1	NW_921351.1	14349132	38488274	plus	G	alt_assembly_1	Celera	Celera	view	500
1	NT_032977.8	10178428	39979097	plus	A	ref_assembly	reference	reference	view	500

NCBI Resource Links

Submitter-Referenced
GenBank
NT_077386 AC067884 AL049824.4 AL354888.5 AL354888.6

dbSNP Blast Analysis
GenBank HTGS Finished:	GenBank HTGS Draft:
AL049824.4	AL354888.6

Population Diversity

	Sample Ascertainment				Genotype Detail							Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	C/C	C/T	G/G	T/T	HWP	A	G
ss3258841	HapMap-CEU	European	120	IG	0.133	0.467			0.400		1.000	0.367	0.633

	HapMap-HCB	Asian	90	IG	0.289	0.533			0.178		0.655	0.556	0.444

	HapMap-JPT	Asian	86	IG	0.395	0.372			0.233		0.200	0.581	0.419

	HapMap-YRI	Sub-Saharan African	120	IG	0.183	0.500			0.317		1.000	0.433	0.567

ss752239	SC_12_A	Asian	24	IG	0.583	0.417					0.371	0.792	0.208

	SC_12_AA	African American	24	IG		0.500			0.500		0.251	0.250	0.750

	SC_12_C	European	12	IG		0.500			0.500		0.439	0.250	0.750

	SC_95_C	European	186	AF			0.356	0.578		0.067	0.001	0.300	0.700

Concordant Genotype	Total Sample	A/A	A/G	C/C	C/T	G/G	T/T
ss3258841	226	54	104			66
ss752239	78	7	13	26	17	10	3

RefSNP Genotype Summary	Total Individual	A/A	A/G	C/C	C/T	G/G	T/T
rs580699	350	61	117	26	17	76	3

Discordant Genotypes:
Indiviudal SampleID	SubSNP(ss)	Genotype	Population Handle	Submitter Population	Submitter SampleID	SampleID Alias	Submission Batch	NCBI ProbeID
150	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1334.01		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
150	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA10846	CEPH1334.01	r23_ch1_CEU_illumina:golden_gate_1.0.0
151	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1334.02		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
151	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA10847	CEPH1334.02	r23_ch1_CEU_illumina:golden_gate_1.0.0
157	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1334.10		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
157	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA12144	CEPH1334.10	r23_ch1_CEU_illumina:golden_gate_1.0.0
158	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1334.11		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
158	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA12145	CEPH1334.11	r23_ch1_CEU_illumina:golden_gate_1.0.0
159	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1334.12		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
159	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA12146	CEPH1334.12	r23_ch1_CEU_illumina:golden_gate_1.0.0
160	ss752239	T/T	TSC-CSHL	SC_95_C	CEPH1334.13		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
160	ss3258841	A/A	CSHL-HAPMAP	HapMap-CEU	NA12239	CEPH1334.13	r23_ch1_CEU_illumina:golden_gate_1.0.0
161	ss752239	T/T	TSC-CSHL	SC_95_C	CEPH1340.01		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
161	ss3258841	A/A	CSHL-HAPMAP	HapMap-CEU	NA07029	CEPH1340.01	r23_ch1_CEU_illumina:golden_gate_1.0.0
162	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1340.02		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
162	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA07019	CEPH1340.02	r23_ch1_CEU_illumina:golden_gate_1.0.0
169	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1340.09		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
169	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA06994	CEPH1340.09	r23_ch1_CEU_illumina:golden_gate_1.0.0
170	ss752239	T/T	TSC-CSHL	SC_95_C	CEPH1340.10		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
170	ss3258841	A/A	CSHL-HAPMAP	HapMap-CEU	NA07000	CEPH1340.10	r23_ch1_CEU_illumina:golden_gate_1.0.0
171	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1340.11		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
171	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA07022	CEPH1340.11	r23_ch1_CEU_illumina:golden_gate_1.0.0
172	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1340.12		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
172	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA07056	CEPH1340.12	r23_ch1_CEU_illumina:golden_gate_1.0.0
174	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1341.01		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
174	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA07048	CEPH1341.01	r23_ch1_CEU_illumina:golden_gate_1.0.0
175	ss752239	T/T	TSC-CSHL	SC_95_C	CEPH1341.02		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
175	ss3258841	A/A	CSHL-HAPMAP	HapMap-CEU	NA06991	CEPH1341.02	r23_ch1_CEU_illumina:golden_gate_1.0.0
184	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1341.11		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
184	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA07034	CEPH1341.11	r23_ch1_CEU_illumina:golden_gate_1.0.0
185	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1341.12		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
185	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA07055	CEPH1341.12	r23_ch1_CEU_illumina:golden_gate_1.0.0
186	ss752239	T/T	TSC-CSHL	SC_95_C	CEPH1341.13		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
186	ss3258841	A/A	CSHL-HAPMAP	HapMap-CEU	NA06993	CEPH1341.13	r23_ch1_CEU_illumina:golden_gate_1.0.0
187	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1341.14		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
187	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA06985	CEPH1341.14	r23_ch1_CEU_illumina:golden_gate_1.0.0
215	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1346.01		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
215	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA10857	CEPH1346.01	r23_ch1_CEU_illumina:golden_gate_1.0.0
226	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1346.12		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
226	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA12044	CEPH1346.12	r23_ch1_CEU_illumina:golden_gate_1.0.0
229	ss752239	A/G	TSC-CSHL	SC_12_C	CEPH1347.02		TSC-SANGER-SC_12_C-Sep-18-2003-GENOTYPE
229	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1347.02		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
229	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA10859	CEPH1347.02	r23_ch1_CEU_illumina:golden_gate_1.0.0
230	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1347.03		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
230	ss752239	G/G	TSC-CSHL	SC_12_C	CEPH1347.03		TSC-SANGER-SC_12_C-Sep-18-2003-GENOTYPE
231	ss752239	A/G	TSC-CSHL	SC_12_C	CEPH1347.04		TSC-SANGER-SC_12_C-Sep-18-2003-GENOTYPE
231	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1347.04		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
238	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1347.14		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
238	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA11881	CEPH1347.14	r23_ch1_CEU_illumina:golden_gate_1.0.0
239	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1347.15		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
239	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA11882	CEPH1347.15	r23_ch1_CEU_illumina:golden_gate_1.0.0
348	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1362.01		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
348	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA10860	CEPH1362.01	r23_ch1_CEU_illumina:golden_gate_1.0.0
349	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1362.02		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
349	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA10861	CEPH1362.02	r23_ch1_CEU_illumina:golden_gate_1.0.0
360	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1362.13		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
360	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA11992	CEPH1362.13	r23_ch1_CEU_illumina:golden_gate_1.0.0
361	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1362.14		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
361	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA11993	CEPH1362.14	r23_ch1_CEU_illumina:golden_gate_1.0.0
362	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1362.15		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
362	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA11994	CEPH1362.15	r23_ch1_CEU_illumina:golden_gate_1.0.0
363	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1362.16		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
363	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA11995	CEPH1362.16	r23_ch1_CEU_illumina:golden_gate_1.0.0
399	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1408.01		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
399	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA10830	CEPH1408.01	r23_ch1_CEU_illumina:golden_gate_1.0.0
400	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1408.02		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
400	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA10831	CEPH1408.02	r23_ch1_CEU_illumina:golden_gate_1.0.0
408	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1408.10		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
408	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA12154	CEPH1408.10	r23_ch1_CEU_illumina:golden_gate_1.0.0
409	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1408.11		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
409	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA12236	CEPH1408.11	r23_ch1_CEU_illumina:golden_gate_1.0.0
410	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1408.12		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
410	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA12155	CEPH1408.12	r23_ch1_CEU_illumina:golden_gate_1.0.0
411	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1408.13		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
411	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA12156	CEPH1408.13	r23_ch1_CEU_illumina:golden_gate_1.0.0
429	ss752239	A/G	TSC-CSHL	SC_12_C	CEPH1416.01		TSC-SANGER-SC_12_C-Sep-18-2003-GENOTYPE
429	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1416.01		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
429	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA10835	CEPH1416.01	r23_ch1_CEU_illumina:golden_gate_1.0.0
430	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1416.02		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
430	ss752239	G/G	TSC-CSHL	SC_12_C	CEPH1416.02		TSC-SANGER-SC_12_C-Sep-18-2003-GENOTYPE
438	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1416.11		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
438	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA12248	CEPH1416.11	r23_ch1_CEU_illumina:golden_gate_1.0.0
439	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1416.12		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
439	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA12249	CEPH1416.12	r23_ch1_CEU_illumina:golden_gate_1.0.0
456	ss752239	C/C	TSC-CSHL	SC_95_C	CEPH1420.01		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
456	ss3258841	G/G	CSHL-HAPMAP	HapMap-CEU	NA10838	CEPH1420.01	r23_ch1_CEU_illumina:golden_gate_1.0.0
457	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1420.02		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
457	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA10839	CEPH1420.02	r23_ch1_CEU_illumina:golden_gate_1.0.0
464	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1420.09		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
464	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA12003	CEPH1420.09	r23_ch1_CEU_illumina:golden_gate_1.0.0
465	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1420.10		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
465	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA12004	CEPH1420.10	r23_ch1_CEU_illumina:golden_gate_1.0.0
466	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1420.11		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
466	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA12005	CEPH1420.11	r23_ch1_CEU_illumina:golden_gate_1.0.0
467	ss752239	C/T	TSC-CSHL	SC_95_C	CEPH1420.12		TSC-SANGER-SC_95_C-Sep-18-2003-GENOTYPE
467	ss3258841	A/G	CSHL-HAPMAP	HapMap-CEU	NA12006	CEPH1420.12	r23_ch1_CEU_illumina:golden_gate_1.0.0

Genotype data submitted for	401	samples from	350	individuals	Individual with multiple genotypes submission:	49

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

Validated by: ILLUMINA

DoubleHit found by: NCBI

UNKNOWN

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Revised: May 25, 2006 1:38 PM .