proteins
| 69 proteins |
J | COG0200 | Ribosomal protein L15 | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Yersinia pestis (Enterobacteriales | Gammaproteobacteria) | ||||
| YPO0228 | ||||
110 letters (r) 0
0 502 ||| 1 YPO0422 (110) 40
-10 63 = 40 MA1094 (140) = 4
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= YPO0422
(110 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
YPO0422 197 2e-51
MA1094 29 1.9
Cgl1702 27 5.6
Cj1552c 27 5.6
YDL046w 27 8.1
# >YPO0422
# Length = 110
#
# Score = 197 bits (502), Expect = 2e-51
# Identities = 110/110 (100%), Positives = 110/110 (100%)
#
# Query: 1 MKCISVPTSQEAMSRLDFDKCIDGDVIDLNITDEQYRSLVELGLIRLMNDLFDICIDEFE 60
# MKCISVPTSQEAMSRLDFDKCIDGDVIDLNITDEQYRSLVELGLIRLMNDLFDICIDEFE
# Sbjct: 1 MKCISVPTSQEAMSRLDFDKCIDGDVIDLNITDEQYRSLVELGLIRLMNDLFDICIDEFE 60
#
# Query: 61 DEKIVGVDSLTQARLLIENDFHPSENEAVNLLLSQVNKATEYETGLFFYF 110
# DEKIVGVDSLTQARLLIENDFHPSENEAVNLLLSQVNKATEYETGLFFYF
# Sbjct: 61 DEKIVGVDSLTQARLLIENDFHPSENEAVNLLLSQVNKATEYETGLFFYF 110
#
#
# >MA1094
# Length = 140
#
# Score = 28.9 bits (63), Expect = 1.9
# Identities = 16/67 (23%), Positives = 33/67 (48%)
#
# Query: 23 DGDVIDLNITDEQYRSLVELGLIRLMNDLFDICIDEFEDEKIVGVDSLTQARLLIENDFH 82
# D ++++ DE LVE GL + + + I ++ EK++G +T+ ++ +F
# Sbjct: 63 DVSIVNVGELDELASYLVEEGLAEVKDGAYHINLENLGIEKVLGSGRVTKNLVVTSEEFS 122
#
# Query: 83 PSENEAV 89
# S E +
# Sbjct: 123 ASAREKI 129
#
#
# >Cgl1702
# Length = 179
#
# Score = 27.3 bits (59), Expect = 5.6
# Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
#
# Query: 33 DEQYRSLVELGLIRLMNDLFDICIDEFEDEKIVGVDSLTQARLLIENDFHPSENEAV--- 89
# D R L ++ L+N LF + +DE +DS Q +L+E +H A
# Sbjct: 37 DTDLRKLTNTDVLDLINALFGTTVTSADDEAADFIDSDPQFAVLVELAYHDCARRAAMGL 96
#
# Query: 90 ----NLLLSQVNKATEYET 104
# L+ K+T Y +
# Sbjct: 97 SRVQQLIYDNAAKSTYYRS 115
#
#
# >Cj1552c
# Length = 488
#
# Score = 27.3 bits (59), Expect = 5.6
# Identities = 17/48 (35%), Positives = 27/48 (55%), Gaps = 3/48 (6%)
#
# Query: 10 QEAMSRLDFDKCIDG-DVIDLNITDEQY--RSLVELGLIRLMNDLFDI 54
# Q+ LD+ KC D D+ N + ++Y L+E GL++ +ND F I
# Sbjct: 173 QDIYDLLDYSKCFDMLDISYDNYSSDEYIIEKLIEHGLVKNLNDSFAI 220
#
#
# >YDL046w
# Length = 173
#
# Score = 26.9 bits (58), Expect = 8.1
# Identities = 13/28 (46%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
#
# Query: 40 VELGLIRLMNDLFDICIDEFEDEKIVGV 67
# V LG IRL++ FD+C + ED I G+
# Sbjct: 95 VRLGYIRLLSQTFDLC-ETLEDNDIEGL 121
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.321 0.141 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,570,349
Number of Sequences: 192987
Number of extensions: 414249
Number of successful extensions: 1214
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1207
Number of HSP's gapped (non-prelim): 15
length of query: 110
length of database: 59,019,183
effective HSP length: 86
effective length of query: 24
effective length of database: 42,422,301
effective search space: 1018135224
effective search space used: 1018135224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
S2: 58 (26.9 bits)