18
proteins |
M |
COG3306 |
Glycosyltransferase involved in LPS biosynthesis |
Help |
20 hits to 10 species
273 letters
1438 = jhp0765 (273) =
1366 = HP0826 (273) =
581 = jhp0741 (292) =
566 = HP0805 (284) =
187 = jhp0562 (332) =
130 = jhp0563 (444) =
118 = HI0550 (302) =
115 = HI0765 (282) =
106 = mll0582_3 (244) =
97 = HI1697 (257) =
88 = PM1143 (222) =
82 = PM0509 (261) =
81 = NMB1926 (280) =
79 BBA71 (137)
65 _ slr0616 (418) COG0477
64 _ MJ1391 (418) COG0436
64 _ AF1444 (410) COG2304
63 _ aq_672 (746) COG0068
63 YMR212c (782)
62 _ ML1954 (312) COG1072
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= jhp0765
(273 letters)
Database: xyva
108,091 sequences; 33,061,072 total letters
Score E
Sequences producing significant alignments: (bits) Value
jhp0765 558 e-159
HP0826 530 e-151
jhp0741 228 6e-60
HP0805 222 4e-58
jhp0562 77 3e-14
jhp0563 55 1e-07
HI0550 50 3e-06
HI0765 49 7e-06
mll0582_3 45 8e-05
HI1697 42 9e-04
PM1143 39 0.009
PM0509 36 0.047
NMB1926 36 0.061
BBA71 35 0.10
slr0616 30 4.4
MJ1391 29 5.7
AF1444 29 5.7
aq_672 29 7.5
YMR212c 29 7.5
ML1954 28 9.8
# >jhp0765
# Length = 273
#
# Score = 558 bits (1438), Expect = e-159
# Identities = 273/273 (100%), Positives = 273/273 (100%)
#
# Query: 1 MRVFIISLNQKVCDKFGLVFRDTTTLLNNINATHHQAQIFDAIYSKTFEGGLHPLVKKHL 60
# MRVFIISLNQKVCDKFGLVFRDTTTLLNNINATHHQAQIFDAIYSKTFEGGLHPLVKKHL
# Sbjct: 1 MRVFIISLNQKVCDKFGLVFRDTTTLLNNINATHHQAQIFDAIYSKTFEGGLHPLVKKHL 60
#
# Query: 61 HPYFITQNIKDMGIATSLISEVSKFYYALKYHAKFMSLGELGCYASHYSLWQKCIELNEA 120
# HPYFITQNIKDMGIATSLISEVSKFYYALKYHAKFMSLGELGCYASHYSLWQKCIELNEA
# Sbjct: 61 HPYFITQNIKDMGIATSLISEVSKFYYALKYHAKFMSLGELGCYASHYSLWQKCIELNEA 120
#
# Query: 121 ICILEDDITLKEDFKEGLDFLEKHIQELGYARLMHLLYDASVKSEPLNHKNQEIQERVGI 180
# ICILEDDITLKEDFKEGLDFLEKHIQELGYARLMHLLYDASVKSEPLNHKNQEIQERVGI
# Sbjct: 121 ICILEDDITLKEDFKEGLDFLEKHIQELGYARLMHLLYDASVKSEPLNHKNQEIQERVGI 180
#
# Query: 181 IKAYSHGVGTQGYVITPKIAKVFLKHSRKWVVPVDTIMDATFIHGVKNLVLQPFVIADDE 240
# IKAYSHGVGTQGYVITPKIAKVFLKHSRKWVVPVDTIMDATFIHGVKNLVLQPFVIADDE
# Sbjct: 181 IKAYSHGVGTQGYVITPKIAKVFLKHSRKWVVPVDTIMDATFIHGVKNLVLQPFVIADDE 240
#
# Query: 241 QISTIARKEEPYSPKIALMRELHFKFLKWWQFV 273
# QISTIARKEEPYSPKIALMRELHFKFLKWWQFV
# Sbjct: 241 QISTIARKEEPYSPKIALMRELHFKFLKWWQFV 273
#
#
# >HP0826
# Length = 273
#
# Score = 530 bits (1366), Expect = e-151
# Identities = 260/273 (95%), Positives = 266/273 (97%)
#
# Query: 1 MRVFIISLNQKVCDKFGLVFRDTTTLLNNINATHHQAQIFDAIYSKTFEGGLHPLVKKHL 60
# MRVF ISLNQKVCD FGLVFRDTTTLLN+INATHHQAQIFDAIYSKTFEGGLHPLVKKHL
# Sbjct: 1 MRVFAISLNQKVCDTFGLVFRDTTTLLNSINATHHQAQIFDAIYSKTFEGGLHPLVKKHL 60
#
# Query: 61 HPYFITQNIKDMGIATSLISEVSKFYYALKYHAKFMSLGELGCYASHYSLWQKCIELNEA 120
# HPYFITQNIKDMGI T+LISEVSKFYYALKYHAKFMSLGELGCYASHYSLW+KCIELNEA
# Sbjct: 61 HPYFITQNIKDMGITTNLISEVSKFYYALKYHAKFMSLGELGCYASHYSLWEKCIELNEA 120
#
# Query: 121 ICILEDDITLKEDFKEGLDFLEKHIQELGYARLMHLLYDASVKSEPLNHKNQEIQERVGI 180
# ICILEDDITLKEDFKEGLDFLEKHIQELGY RLMHLLYDASVKSEPL+HKN EIQERVGI
# Sbjct: 121 ICILEDDITLKEDFKEGLDFLEKHIQELGYIRLMHLLYDASVKSEPLSHKNHEIQERVGI 180
#
# Query: 181 IKAYSHGVGTQGYVITPKIAKVFLKHSRKWVVPVDTIMDATFIHGVKNLVLQPFVIADDE 240
# IKAYS GVGTQGYVITPKIAKVFLK SRKWVVPVDTIMDATFIHGVKNLVLQPFVIADDE
# Sbjct: 181 IKAYSEGVGTQGYVITPKIAKVFLKCSRKWVVPVDTIMDATFIHGVKNLVLQPFVIADDE 240
#
# Query: 241 QISTIARKEEPYSPKIALMRELHFKFLKWWQFV 273
# QISTIARKEEPYSPKIALMRELHFK+LK+WQFV
# Sbjct: 241 QISTIARKEEPYSPKIALMRELHFKYLKYWQFV 273
#
#
# >jhp0741
# Length = 292
#
# Score = 228 bits (581), Expect = 6e-60
# Identities = 128/279 (45%), Positives = 167/279 (58%), Gaps = 14/279 (5%)
#
# Query: 1 MRVFIISLNQKVCDKFGLVFRDTTTLLNNINATHHQAQIFDAIYSKTFEGGLHPLVKKHL 60
# MRVFII L+ K C F L T LL ++ +IFDAIYSK LHPL+ +HL
# Sbjct: 12 MRVFIIHLSPKTCKNFSLKETHITPLLESLKLQGISYEIFDAIYSKISPTQLHPLILEHL 71
#
# Query: 61 HPYFITQNIKDM-GIATSLISEVSKFYYALKYHAKFMSLGELGCYASHYSLWQKCIELNE 119
# HP F+ +++ + F+YALK+ K M GELGCYASHYSLWQKCIELNE
# Sbjct: 72 HPSFMVEDLLAFCKNKKHPPCALKNFFYALKHCGKRMGFGELGCYASHYSLWQKCIELNE 131
#
# Query: 120 AICILEDDITLKEDFKEGLDFLEKHIQELGYARLMHLLYDASVKSEPLNHKNQEIQERVG 179
# AICILEDDITLKE FKE L+F +HI ELGY RLMHL + + + P+ +Q
# Sbjct: 132 AICILEDDITLKEHFKESLEFCRQHINELGYIRLMHLEENVAKQKTPVKGVSQ------- 184
#
# Query: 180 IIKAYSHGVGTQGYVITPKIAKVFLKHSRK-WVVPVDTIMDATFIHGVKNLVLQPFVIAD 238
# I + G+GTQGYV+ PK A+ LK+S K WV+P+D +MD + HGVKN VL+ F IA
# Sbjct: 185 -ILNFKDGIGTQGYVLAPKAAQKLLKYSAKEWVMPIDCVMDRHYWHGVKNYVLEEFAIAC 243
#
# Query: 239 D----EQISTIARKEEPYSPKIALMRELHFKFLKWWQFV 273
# D + +T ++ + I + R LH ++ W +
# Sbjct: 244 DGINAQNSNTEKQRPKRLPLSIRIGRFLHKSAIQQWNIL 282
#
#
# >HP0805
# Length = 284
#
# Score = 222 bits (566), Expect = 4e-58
# Identities = 127/281 (45%), Positives = 165/281 (58%), Gaps = 26/281 (9%)
#
# Query: 1 MRVFIISLNQKVCDKFGLVFRDTTTLLNNINATHHQAQIFDAIYSKTFEGGLHPLVKKHL 60
# MRVFII L+ K C F L T LL ++ +IFDAIYSK LHPL+ +HL
# Sbjct: 1 MRVFIIHLSPKTCQNFSLKETHITPLLESLKLQGISYEIFDAIYSKISPTQLHPLILEHL 60
#
# Query: 61 HPYFITQNI-------KDMGIATSLISEVSKFYYALKYHAKFMSLGELGCYASHYSLWQK 113
# HP F+ +++ K A + F+YA+K+ K M GELGCYASHYSLWQK
# Sbjct: 61 HPSFMVEDLWAFCKNKKHPPCA------LKNFFYAIKHCGKRMGFGELGCYASHYSLWQK 114
#
# Query: 114 CIELNEAICILEDDITLKEDFKEGLDFLEKHIQELGYARLMHLLYDASVKSEPLNHKNQE 173
# CIELNEAICILEDDI +K+ FKE L+F HI ELGY RLMHL + + + P+ +Q
# Sbjct: 115 CIELNEAICILEDDIIIKDRFKESLEFCRHHINELGYIRLMHLEENVAKQKTPVKGVSQ- 173
#
# Query: 174 IQERVGIIKAYSHGVGTQGYVITPKIAKVFLKHSRK-WVVPVDTIMDATFIHGVKNLVLQ 232
# I + G+GTQGYV+ PK A+ LK+S K WV+P+D +MD + HGVKN VL+
# Sbjct: 174 -------ILNFKDGIGTQGYVLAPKAAQKLLKYSAKEWVMPIDCVMDRHYWHGVKNYVLE 226
#
# Query: 233 PFVIADDEQISTIARKEEPYSPKIALM----RELHFKFLKW 269
# F IA D + + E+ K+ L R LH +K+
# Sbjct: 227 EFAIACDGMNAQNSNTEKQRPKKLPLSIRIGRSLHKSTIKF 267
#
#
# >jhp0562
# Length = 332
#
# Score = 76.6 bits (187), Expect = 3e-14
# Identities = 77/290 (26%), Positives = 119/290 (40%), Gaps = 84/290 (28%)
#
# Query: 38 QIFDAIYSKTFEGGLHPLVKKHLHPYFITQNIKDMGIATSLISEVSKFYYALKYHAKFMS 97
# QIFDAI K H +K L + Q++ S +Y++ Y ++
# Sbjct: 36 QIFDAISPK------HQDFEKLLQELYNAQSLLQ-----------SDWYHS--YVGAGLT 76
#
# Query: 98 LGELGCYASHYSLWQKCIELNEAICILEDDITLKEDFKEGLDFLEKHIQELGYARL---- 153
# L ELGCY SHY LW++C++L++ + ILEDD+TL+ F + L+ K + RL
# Sbjct: 77 LPELGCYLSHYLLWKECVKLDQPVVILEDDVTLESHFMQALEDCLK--SPFDFVRLYGCY 134
#
# Query: 154 -------MHLL--------YDASVKSEPLNHKNQEIQERVGIIKAYSHGV---------- 188
# H+L +D S K+ P+ K ++ + + +H V
# Sbjct: 135 WYYHETKFHVLPKEFVFPPFDHSFKNNPILEKFKKFFDVSRFLNLSTHKVIHYILKKIQK 194
#
# Query: 189 ------------------------GTQGYVITPKIAKVFLK--HSRKWVVPVDTIMDATF 222
# T GY +TPK AK F++ S K + PVD MD +
# Sbjct: 195 SYYATHEKEAFFLEHFYLTSVYVASTAGYYLTPKGAKTFIEATESFKIIEPVDMFMDNSA 254
#
# Query: 223 IHGVKNLVLQPFVIADDEQI--STIAR------KEEPYSPKIALMRELHF 264
# H V NL P ++ E STI + K P P+ + + L +
# Sbjct: 255 YHDVANLTYVPCPVSLSEHSLDSTIQKPQKKSLKSYPLPPQKSTFKNLFY 304
#
#
# >jhp0563
# Length = 444
#
# Score = 54.7 bits (130), Expect = 1e-07
# Identities = 20/40 (50%), Positives = 30/40 (75%)
#
# Query: 100 ELGCYASHYSLWQKCIELNEAICILEDDITLKEDFKEGLD 139
# E GCY SHY LW++C++ N+ + ILEDD+TL+ F + L+
# Sbjct: 93 EFGCYLSHYFLWKECVKSNQPVVILEDDVTLESHFMQALE 132
#
#
#
# Score = 38.1 bits (87), Expect = 0.012
# Identities = 42/156 (26%), Positives = 68/156 (42%), Gaps = 13/156 (8%)
#
# Query: 105 ASHYSLWQKCIELNEAICILEDDITLKEDFKEGLDFLEKHIQELGYARLMHLLYDASVK- 163
# A + L K +LN+ I DD+T K D + EK+ +G + L + ++K
# Sbjct: 248 AKYDDLTGKYDDLNKNIAEKYDDLTGKYD-DLNKNIAEKYDDLMGKYEAL-LAKETNIKE 305
#
# Query: 164 ----SEPLNHKNQEIQERVGIIKAYSHGVGTQGYVITPKIAKVFLKHSRKW--VVPVDTI 217
# S N K E + Y T GY +TPK AK F++ + ++ + PVD
# Sbjct: 306 TFWESRADNEKEALFLEHFYLTSVYV--ATTAGYYLTPKGAKTFIEATERFKIIEPVDMF 363
#
# Query: 218 MDATFIHGVKNLVLQPFVIADDEQI--STIARKEEP 251
# M+ H V N P ++ ++ STI ++P
# Sbjct: 364 MNNPTYHDVANFTYLPCPVSLNKHAFNSTIQNAKKP 399
#
#
# >HI0550
# Length = 302
#
# Score = 50.1 bits (118), Expect = 3e-06
# Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 22/137 (16%)
#
# Query: 93 AKFMSLGELGCYASHYSLWQKCIELN-EAICILEDDITLKED----------FKEGLDFL 141
# ++ ++ GE GC SH+ LW KC+ N E + I EDD+ L E+ K DF
# Sbjct: 80 SRILTKGEKGCLISHFLLWNKCVNENFEYLKIFEDDVILGENAEVFLNQNEWLKTRFDFN 139
#
# Query: 142 EKHIQELGYARLMHLLYDASVKSEPLNHKNQEIQERVGIIKAYSHGVGTQGYVITPKIAK 201
# + I L L + + K P N +N +I + S GT GY+I+ AK
# Sbjct: 140 DIFIIRL-ETFLQPVKLEKQTKIPPFNSRNFDILK--------STHWGTAGYIISQGAAK 190
#
# Query: 202 VFLKHSRKWVVPVDTIM 218
# +++ + +P D I+
# Sbjct: 191 YVIEYLKN--IPSDEIV 205
#
#
# >HI0765
# Length = 282
#
# Score = 48.9 bits (115), Expect = 7e-06
# Identities = 60/201 (29%), Positives = 86/201 (41%), Gaps = 34/201 (16%)
#
# Query: 57 KKHLHPYFITQNIKDM---GIATSLISEVSK-FYYALKYHAKF-MSLGELGCYASHYSLW 111
# +KH+ F QNI I +I E +K F L K +S GE+GC SH LW
# Sbjct: 46 RKHITEEFGKQNIPFEFFDAITPDIIEETAKKFNITLDRSPKAKLSDGEIGCALSHIVLW 105
#
# Query: 112 QKCIELN-EAICILEDDITLKEDFKE--GLDFL--EKHIQELGYARLMHLLYDASVKSE- 165
# +E N I I EDDI L E+ KE +D++ + H+ +L M SVK +
# Sbjct: 106 DLALENNLNYINIFEDDIHLGENAKELLEIDYISDDIHVLKLEANGKMFFKQPKSVKCDR 165
#
# Query: 166 ---PLNHKNQEIQERVGIIKAYSHGVGTQGYVITPKIAKVFLK--HSRKWVVPVDTIMDA 220
# P+ K G GY +T K AK L+ ++ V VD+++
# Sbjct: 166 NVYPMTVKQS----------------GCAGYTVTAKGAKYLLELVKNKPLDVAVDSLVFE 209
#
# Query: 221 TFIH--GVKNLVLQPFVIADD 239
# F+H K + L P + D
# Sbjct: 210 DFLHFKDYKIVQLSPGICVQD 230
#
#
# >mll0582_3
# Length = 244
#
# Score = 45.4 bits (106), Expect = 8e-05
# Identities = 48/183 (26%), Positives = 74/183 (40%), Gaps = 45/183 (24%)
#
# Query: 99 GELGCYASHYSLWQKCIELNEAICILEDDITLKEDFKEGLDFLEKHIQELGYA------- 151
# G LGC SH +LW+ + I I EDD+ +FLE+ + L A
# Sbjct: 61 GALGCALSHINLWKLAVSEKRPITIFEDDV------YSSFNFLEESTRILSMAPENWDMV 114
#
# Query: 152 --------RLMHLLYDAS-VKSEPLNHKNQEIQERV-------GIIKAYSHGVGTQGYVI 195
# + L +D S K E N ++++I + +I+ H G Y +
# Sbjct: 115 KWGFNFDPLFLWLNFDFSKAKLEFYNRQHKQIPAQFQSETYPRSLIRLV-HSFGAMAYSV 173
#
# Query: 196 TPKIAKVFLKHS---RKWVVP------------VDTIMDATFIHGVKNLVLQPFVIADDE 240
# TP+ A+V L+ RK ++P +D M A + + + P VI DDE
# Sbjct: 174 TPRGAQVLLEKCLPLRKRLIPFPGTGVVLEDEGIDCAMSAVYDSMHAFVCMPPLVIHDDE 233
#
# Query: 241 QIS 243
# Q S
# Sbjct: 234 QAS 236
#
#
# >HI1697
# Length = 257
#
# Score = 42.0 bits (97), Expect = 9e-04
# Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
#
# Query: 91 YHAKFMSLGELGCYASHYSLWQKCIELNEA-----ICILEDDITLKEDFKEGL-----DF 140
# ++ + ++ GE+GC SH S++QK +E N+ + EDD DF++ L +
# Sbjct: 56 HYFRNVTKGEIGCTLSHLSVYQKIVEDNDIAEDSYALVCEDDALFHSDFQQNLTALLSEK 115
#
# Query: 141 LEKHIQELGYARLMHLL-YDASVKSEPLNHKNQEIQERVGIIKAY-SHGVGTQGYVITPK 198
# LE I LG +++ +D + + V Y S+ GT GY+I
# Sbjct: 116 LEAEIILLGQSKINDFNDFDLEINYPTTFSFLCKKTGDVNYAFPYKSYFAGTVGYLIKKS 175
#
# Query: 199 IAKVFLKHSRK----WVVPVDTIMDATFIHGVKNLVLQPFVIADD 239
# A+ F++ + W+ + + F ++N V++P ++ ++
# Sbjct: 176 AARRFIQQISQNKPFWLADDFLLFEQNF--NIRNKVVRPLIVIEN 218
#
#
# >PM1143
# Length = 222
#
# Score = 38.5 bits (88), Expect = 0.009
# Identities = 24/78 (30%), Positives = 43/78 (54%), Gaps = 6/78 (7%)
#
# Query: 79 ISEVSKFYYALKYHA-KFMSLGELGCYASHYSLWQ-KCIELNEAICILEDDITLKEDF-- 134
# ++ + +Y ++ A K +++GE+GC SH S++Q C E ILEDD + +F
# Sbjct: 48 LNNIDYTFYPQRFAARKPLTVGEIGCAMSHLSIYQMMCNEKIARAIILEDDAIVSHEFEA 107
#
# Query: 135 --KEGLDFLEKHIQELGY 150
# K+ L + K+++ L Y
# Sbjct: 108 IVKDSLKKVSKNVEILFY 125
#
#
# >PM0509
# Length = 261
#
# Score = 36.2 bits (82), Expect = 0.047
# Identities = 29/136 (21%), Positives = 64/136 (46%), Gaps = 18/136 (13%)
#
# Query: 90 KYHAKFMSLGELGCYASHYSLWQK-----CIELNEAICILEDDITLKEDFKEGLDFL--- 141
# +Y+ + ++ GE+GC SH +++Q+ I N+ + EDD+ + F+ L+ L
# Sbjct: 54 QYYGRAVTKGEVGCTLSHLAVYQQIVGDATISENDYCLVCEDDVLFNQGFQRHLETLLTQ 113
#
# Query: 142 --EKHIQELGYARLMHLLYDASVKSEPLNHKNQEIQERVGIIKAY------SHGVGTQGY 193
# + + +G +++ H ++AS +++ Y ++ GT Y
# Sbjct: 114 KPQADVILVGQSKIDH--FEASELEINYPTTFACCAKKIAHSSFYYAYPYKNYFAGTVAY 171
#
# Query: 194 VITPKIAKVFLKHSRK 209
# +I A+VF++ S++
# Sbjct: 172 LIKKSAARVFIEQSQQ 187
#
#
# >NMB1926
# Length = 280
#
# Score = 35.8 bits (81), Expect = 0.061
# Identities = 33/134 (24%), Positives = 61/134 (44%), Gaps = 17/134 (12%)
#
# Query: 100 ELGCYASHYSLWQKCIELN-EAICILEDDITLKEDFKEGL---DFLEKHIQE--LGYARL 153
# E C+ SH LW++ ++ + + EDD+ L +D ++ L +LE+ + RL
# Sbjct: 62 EKACFMSHAVLWKQALDEGLPYVAVFEDDVLLGKDAEKFLAEDTWLEERFDKDSAFIVRL 121
#
# Query: 154 MHLLYDASVKSEP-LNHKNQEIQERVGIIKAYSHGVGTQGYVITPKIAKVFLKH----SR 208
# + V+ + LN++N+ S GT GY+I+ + + FL+
# Sbjct: 122 ETMFAKVIVRPDKVLNYENRSFP------LLESEHWGTAGYIISREAMRFFLERFAVLPA 175
#
# Query: 209 KWVVPVDTIMDATF 222
# +W+ VD +M F
# Sbjct: 176 EWIKAVDWMMFTYF 189
#
#
# >BBA71
# Length = 137
#
# Score = 35.0 bits (79), Expect = 0.10
# Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
#
# Query: 106 SHYSLWQKCIELNEAICILEDDITLKEDFKEGLDFLEKHIQELGYARLMHLLYDASVK 163
# SH L QK ELN+ + E D+ LKE FKE LEK ++E+ Y + + + SVK
# Sbjct: 38 SHLELIQKKEELNDLLIHAEFDLMLKEKFKE---TLEKTVKEV-YPEIQKIKEEYSVK 91
#
#
# >slr0616
# Length = 418
#
# Score = 29.6 bits (65), Expect = 4.4
# Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
#
# Query: 187 GVGTQGYVITPKIAKVFLKHSRKWVVPVDTIMDATFIHGVKNLVLQPFV 235
# G G G + +P I K + R+W++P M A + L + PF+
# Sbjct: 275 GYGVPGLIFSPLIGKAVDRWGRRWLIPPGLAMAA-----IAGLTMVPFI 318
#
#
# >MJ1391
# Length = 418
#
# Score = 29.3 bits (64), Expect = 5.7
# Identities = 18/73 (24%), Positives = 33/73 (44%), Gaps = 3/73 (4%)
#
# Query: 141 LEKHIQELGYARLMHLLY---DASVKSEPLNHKNQEIQERVGIIKAYSHGVGTQGYVITP 197
# +E +IQ L R+ + D K E + QE +R ++ GVG + P
# Sbjct: 1 MESYIQNLFAERIGGKKFGKEDVIYKFEKIKRAKQEAMKRHPDMELIDMGVGEPDEMADP 60
#
# Query: 198 KIAKVFLKHSRKW 210
# ++ +V + ++KW
# Sbjct: 61 EVIRVLCEEAKKW 73
#
#
# >AF1444
# Length = 410
#
# Score = 29.3 bits (64), Expect = 5.7
# Identities = 23/114 (20%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
#
# Query: 39 IFDAIYSKTFEGGLHPLVKKHLHPYFITQNIKDMGIATSLISEVSKFYYALKYH--AKFM 96
# IF+ + + + + L+KKHL P + KD + +S+ ++ K + + H K
# Sbjct: 33 IFNPYHRDSGDFDVTELIKKHLKP----EMAKDFEMYSSVFKDLMKTFGFMSNHWVEKNQ 88
#
# Query: 97 SLGELGCYASHYSLWQKCIELNEAICILEDDITLKEDFKEGLDFLEKHIQELGY 150
# + E + W++ ++ + I +D++++ + D + +QE+GY
# Sbjct: 89 EIKE-----AKQKAWEELKDMLKKGDISKDELSMSQVVDNFFDEVVDELQEMGY 137
#
#
# >aq_672
# Length = 746
#
# Score = 28.9 bits (63), Expect = 7.5
# Identities = 50/196 (25%), Positives = 79/196 (39%), Gaps = 51/196 (26%)
#
# Query: 95 FMSLGELGCYASHYSLWQKCIELNEAICIL-EDDITLKEDFKEGLDFLEKHIQELG---- 149
# F SL ++ YA+ EL +A+ I E I L + KE + ++ +G
# Sbjct: 255 FKSLEQVEAYANP-------TELEKALLISPERPIVLIQKKKELAPSVSPGLKRVGAFLP 307
#
# Query: 150 YARLMHLLYD----------ASVKSEPLNHKNQEIQERVG-------------------- 179
# Y+ L HL+ + A++ EP+ N+E E++G
# Sbjct: 308 YSPLHHLILNSLDFPVVATSANISEEPIIKDNKEALEKLGELADLILVHNRDIKRRCDDS 367
#
# Query: 180 IIKAYSHGVGT-----QGYVITPKIAKVFLKHSRKWVVPVDTIMDATFIHGVKNLVLQPF 234
# ++K S GV T +GY P L K V+ V ++ TF G KN V+
# Sbjct: 368 VVKVVS-GVPTPIRRSRGYAPLPVEVPFELP---KRVLAVGGMLKNTFALGFKNQVILSQ 423
#
# Query: 235 VIADDEQISTIARKEE 250
# I D E ++T+ EE
# Sbjct: 424 HIGDIENLNTLKVFEE 439
#
#
# >YMR212c
# Length = 782
#
# Score = 28.9 bits (63), Expect = 7.5
# Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 15/154 (9%)
#
# Query: 26 LLNNINATHHQAQIFDAIYSKTFEGGLHPLVKKHLHPYFITQNIKDMGIATSL------I 79
# L N + + +F +YS E H + K+ + F M + + L +
# Sbjct: 437 LFNIVETEVPSSILFSKLYSLLRELDSHGVQKEMMEEIF--DKYGKMALLSGLNYFLENV 494
#
# Query: 80 SEVSKFYYALKYHAKFMSLGELGCYASH--YSLWQKCIELNEAICILEDDITLKEDFKEG 137
# SE YY+ YH + + +L Y S Y + + + E + D + K+G
# Sbjct: 495 SEPEYTYYS--YHLQAANFLKLNDYKSQTEYKMQTRTLFTKEDLLSYYSDTGSNKYSKKG 552
#
# Query: 138 LDFLEKHIQELGYARLMHLLYDASVKSEPLNHKN 171
# L ++ + LL D+ V++ PL +KN
# Sbjct: 553 AQILLSRDNQISTS---DLLSDSQVRTTPLEYKN 583
#
#
# >ML1954
# Length = 312
#
# Score = 28.5 bits (62), Expect = 9.8
# Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
#
# Query: 113 KCIELNEAICILEDDITLKEDFKEGLDFLEKHIQELGYARLMHL-------LYDASVK-- 163
# + + ++ + + E+++ E +D LE L ARL+HL L+ A+ +
# Sbjct: 19 RALRMSTPLALTEEELIGLRGLGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFL 78
#
# Query: 164 SEPLNHKNQEIQERVGIIKAYSHGVGTQGYVITPKIAKVFLKHSRKWVVPVDTIMDATFI 223
# EP + + + +G+ + + G T V+ +A+ + H+R +V D +
# Sbjct: 79 GEPQQNPGRPVPFIIGVAGSVAVGKSTTARVLQALLAR-WDHHTRVDLVTTDGFLYPNAE 137
#
# Query: 224 HGVKNLV 230
# G +NL+
# Sbjct: 138 LGRRNLM 144
#
#
Database: xyva
Posted date: Feb 4, 2002 11:21 PM
Number of letters in database: 33,061,072
Number of sequences in database: 108,091
Lambda K H
0.324 0.140 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,279,068
Number of Sequences: 108091
Number of extensions: 695655
Number of successful extensions: 2365
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2343
Number of HSP's gapped (non-prelim): 24
length of query: 273
length of database: 33,061,072
effective HSP length: 104
effective length of query: 169
effective length of database: 21,819,608
effective search space: 3687513752
effective search space used: 3687513752
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)
S2: 62 (28.5 bits)