Singer AU, Rohde JR, Lam R, Skarina T, Kagan O, Dileo R, Chirgadze NY, Cuff ME, Joachimiak A, Tyers M, Sansonetti PJ, Parsot C, Savchenko A. Structure of the Shigella T3SS effector IpaH defines a new class of E3 ubiquitin ligases. Nat Struct Mol Biol. 2008 (12):1293-301.
Nocek B, Kochinyan S, Proudfoot M, Brown G, Evdokimova E, Osipiuk J, Edwards AM, Savchenko A, Joachimiak A, Yakunin AF. Polyphosphate-dependent synthesis of ATP and ADP by the family-2 polyphosphate kinases in bacteria. Proc Natl Acad Sci U S A. 2008 Nov 18;105(46):17730-5.
Kim Y, Li H, Binkowski TA, Holzle D, Joachimiak A. Crystal structure of fatty acid/phospholipid synthesis protein PlsX from Enterococcus faecalis. J Struct Funct Genomics. 2008 Dec 5.
Brown G, Singer A, Lunin VV, Proudfoot M, Skarina T, Flick R, Kochinyan S, Sanishvili R, Joachimiak A, Edwards AM, Savchenko A, Yakunin AF. Structural and biochemical characterization of the type II fructose 1,6-bisphosphatase GlpX from Escherichia coli. J Biol Chem. 2008
Eschenfeldt WH, Lucy S, Millard CS, Joachimiak A, Mark ID (2009) A Family of LIC Vectors for High-Throughput Cloning and Purification of Proteins. Methods in Molecular Biology, 498, 105-15
Abdullah JM, Joachimiak A, Collart FR (2009) "System 48" high-throughput cloning and protein expression analysis. Methods in Molecular Biology, 498, 117-27
Song G, Li Y, Cheng C, Zhao Y, Gao A, Zhang R, Joachimiak A, Shaw N, Liu ZJ. (2008) Structural insight into acute intermittent porphyria. FASEB J. in press
T. A. Binkowski and A. Joachimiak (2008) Protein Functional Surfaces: Global Shape Matching and Local Spatial Alignments of Ligand Binding Sites, BMC Structural Biology, 8:45
A. U. Singer, J. R. Rohde, R. Lam, T. Skarina, O. Kagan, R. DiLeo, N. Y. Chirgadze, M. E. Cuff, A. Joachimiak, M. Tyers, P. J. Sansonetti, C. Parsot, and A. Savchenko (2008) Structure of the Shigella type III secretion effector IpaH defines a novel class of E3 ubiquitin ligases, Nat. Str. & Mol. Biol. Nov. 9
B. Nocek, S. Kochinyan, M.Proudfoot, G.Brown, E. Evdokimova, J. Osipiuk, A. M. Edwards, A. Savchenko, A. Joachimiak, and A. F. Yakunin (2008) Polyphosphate-dependent synthesis of ATP and ADP by the family-2 polyphosphate kinases in bacteria Proc. Nat. Acad. Sci. USA Nov. 10
B. F. Pfleger, T. D. Nusca, Y-c. Kim, J. Y. Lee, C. M. Rath, J. L. Scaglione, B. Janes, N. Bergman, P. Hanna, A. Joachimiak and D. H. Sherman (2008) Structural and Functional Analysis of AsbF: Origin of the Stealth 3, 4-Dihydroxybenzoic Acid Subunit for Petrobactin Biosynthesis in Bacillus anthracis, Proc. Nat. Acad. Sci. 105:17133-8
Ng, A.K., Zhang, H., Tan, K., Li, Z., Liu, J.H., Chan, P.K., Li, S.M., Chan, W.Y., Au, S.W., Joachimiak, A., Walz, T., Wang, J.H., Shaw, P.C. Structure of the influenza virus A H5N1 nucleoprotein: implications for RNA binding, oligomerization, and vaccine design. (2008) FASEB J. 22:3638-47
Shaw, G., Gan, J., Zhou, Y.N., Zhi, H., Subburaman, P., Zhang, R., Joachimiak, A., Jin, D.J., Ji, X. Structure of RapA, a Swi2/Snf2 protein that recycles RNA polymerase during transcription. (2008) Structure. 16:1417-27
Kim, Y.C., Quartey, P., Li, H., Volkart, L., Hatzos, C., Chang, C., Nocek, B., Cuff, M., Osipiuk, J., Tan, K., Fan, Y., Bigelow, L., Maltseva, N., Wu, R., Borovilos, M., Duggan, E., Zhou, M., Binkowski, T.A., Zhang, R. and Joachimiak, A. A Large-Scale Evaluation of Protein Reductive Methylation for Improving Protein Crystallization. (2008) Nat Methods.5:853-4
Gillner, D.M., Bienvenue, D.L., Nocek, B.P., Joachimiak, A., Zachary, V., Bennett, B., Holz, R.C. The dapE-encoded N-succinyl-L: ,L: -diaminopimelic acid desuccinylase from Haemophilus influenzae contains two active-site histidine residues. (2008) J Biol Inorg Chem. In press
Nocek, B., Bigelow, L., Abdullah, J. and Joachimiak, A. Structure of SO2946 Orphan from Shewanella oneidensis Shows “Jelly-Roll” Fold with Carbohydrate-Binding Module. (2008) J. Structural and Functional Genomics. In press
Ng, A.K., Zhang, H., Tan, K., Li, Z., Liu, J., Chan, P.K., Li, S.M., Chan, W.Y., Au, S.W., Joachimiak, A., Walz, T., Wang, J, Shaw, P.C. Structure of the influenza H5N1 nucleoprotein: implications for RNA binding, oligomerization and vaccine design. (2008) FASEB J. In press
He, X., Zhou, J., Bartlam, M., Zhang, R., Ma, J., Lou, Z., Li, X., Li, J., Joachimiak, A., Zeng, Z., Ge, R., Rao, Z., Liu, Y. Crystal structure of the polymerase PA(C)-PB1(N) complex from an avian influenza H5N1 virus. (2008) Nature. 454:1123-6
Rezancova, P., Kozisek, M., Moy, S.F., Sieglova, I., Joachimiak, A., Machius, M. and Otwinowski, Z., Crystal structures of the effector-binding domain of repressor central glycolytic gene regulator from Bacillus subtilis reveal ligand-induced structural changes upon binding of several glycolytic intermediates. (2008) Mol. Microbiology. 69:895-910.
Nettles, K.W., Bruning, J.B., Gil, G., Nowak, J., Sharma, S.K., Hahm, J.B., Kulp, K., Hochberg, R.B., Zhou, H., Katzenellenbogen, J.A., Katzenellenbogen, B.S., Kim, Y., Joachimiak, A., Greene, G.L. NFkappaB selectivity of estrogen receptor ligands revealed by comparative crystallographic analyses. (2008) Nat. Chem. Biol. 4:241-7
Brown, G., Singer, S., Proudfoot, M., Skarina, T., Kim, Y.C., Chang, C.S., Dementieva, I., Kuznetsova, E., Gonzalez, C.F., Joachimiak, A., Savchenko, A., and Yakunin, A.F. Functional and structural characterization of four glutaminases from Escherichia coli and Bacillus subtilis., (2008) Biochemistry., 47:5724-35
Qiu, Y., Zhang, Rg., Binkowski, T.A., Tereshko, V., Joachimiak, A. Kossiakoff, A., The 1.38 A crystal structure of DmsD protein from Salmonella typhimurium, a proofreading chaperone on the Tat pathway. (2008) Proteins,. 71:525-533
Blakeley, M., Ruiz, F., Cachau, R., Hazemann, I., Meilleur, F., Mitschler, A., Ginell, S., Afonine, P., Ventura, O.N., Cousido-Siah, A., Haertlein, M., Joachimiak, A., Myles, D. and Podjarny, A. Observation of Enzymatic Proton Microcircuits By Combined X-Ray and Neutron Crystallography. (2008) PNAS. 105:1844-8
Burley, S.K., Joachimiak, A., Montelione, G., and Wilson, I., Contributions to the NIH Protein Structure Initiative by Four Large-Scale Production Centers. (2008) Structure. 16:5-11
Structural Genomics Consortium; China Structural Genomics Consortium; Northeast Structural Genomics Consortium, Gräslund, S., Nordlund, P., Weigelt, J., Bray, J., Gileadi, O., Knapp, S., Oppermann, U., Arrowsmith, C., Hui, R., Ming, J., dhe-Paganon, S., Park, H.W., Savchenko, A., Yee, A., Edwards, A., Vincentelli, R., Cambillau, C., Kim, R., Kim, SH., Rao, Z., Shi, Y., Terwilliger, T.C., Kim, C.Y., Hung, L.W., Waldo, G.S., Peleg, Y., Albeck, S., Unger, T., Dym, O., Prilusky, J., Sussman, J.L., Stevens, R.C., Lesley, S.A., Wilson, I.A., Joachimiak, A., Collart, F., Dementieva, I., Donnelly, M.I., Eschenfeldt, W.H., Kim, Y., Stols, L., Wu, R., Zhou, M., Burley, S.K., Emtage, J.S., Sauder, J.M., Thompson, D., Bain, K., Luz, J., Gheyi, T., Zhang, F., Atwell, S., Almo, S.C., Bonanno, J.B., Fiser, A., Swaminathan, S., Studier, F.W., Chance, M.R., Sali, A., Acton, T.B., Xiao, R., Zhao, L., Ma, L.C., Hunt, J.F., Tong, L., Cunningham, K., Inouye, M., Anderson, S., Janjua, H., Shastry, R., Ho, C.K., Wang, D., Wang, H., Jiang, M., Montelione, G.T., Stuart, D.I., Owens, R.J., Daenke, S., Schütz, A., Heinemann, U., Yokoyama, S., Büssow, K., Gunsalus, K.C.. Protein production and purification. (2008) Nat Methods. 5:135-46
Zhao, H.T., Hazemann, I., Mitschler, A., Carbone, V., Joachimiak, A., Ginell, S., Podjarny, A., El-Kabbani, O. Unusual Binding Mode of the 2S4R Stereoisomer of the Potent Aldose Reductase Cyclic Imide Inhibitor Fidarestat (2S4S) in the 15 K Crystal Structure of the Ternary Complex Refined at 0.78 A Resolution: Implications for the Inhibition Mechanism. (2008) J Med Chem. 51:1478-1481
Proudfoot, M., Sanders, S.A., Singer, A., Zhang, R., Brown, G., Binkowski, A., Xu, L., Lukin, J.A., Murzin, A.G., Joachimiak, A., Arrowsmith, C.H., Edwards, A.M., Savchenko, A.V., Yakunin, A.F. Biochemical and Structural Characterization of a Novel Family of Cystathionine beta-Synthase Domain Proteins Fused to a Zn Ribbon-Like Domain. (2008) J Mol Biol. 375:301-315
Tan, K., Li, H., Zhang, R., Gu, M., and Joachimiak, A. Structures of Open (R) and Close (T) States of Prephenate Dehydratase (PDT) - Implication of Allosteric Regulation by L-Phenylalanine, (2007) J. Str. Biol. 62:94-107
Dong, A., Xu X., Edwards, A.M.; Midwest Center for Structural Genomics, Chang, C., Chruszcz, M., Cuff, M., Cymborowski, M., Leo, R.D., Egorova, O., Evdokimova, E., Filippova, E., Gu, J., Guthrie, J., Ignatchenko, A., Joachimiak, A., Klostermann, N., Kim, Y., Korniyenko, Y., Minor, W., Que, Q., Savchenko, A., Skarina, T., Tan, K., Yakunin, A., Yee, A., Yim, V., Zhang, R., Zheng, H.; Structural Genomics Consortium, Akutsu, M., Arrowsmith, C., Avvakumov, G.V., Bochkarev, A., Dahlgren, L.G., Dhe-Paganon, S., Dimov, S., Dombrovski, L., Finerty, P. Jr, Flodin, S., Flores, A., Graslund, S., Hammerstrom, M., Herman, M.D., Hong, B.S., Hui, R., Johansson, I., Liu, Y., Nilsson, M., Nedyalkova, L., Nordlund, P., Nyman, T., Min, J., Ouyang, H., Park, H.W., Qi, C., Rabeh, W., Shen, L., Shen, Y., Sukumard, D., Tempel, W., Tong, Y., Tresagues, L., Vedadi, M., Walker, J.R., Weigelt, J., Welin, M., Wu, H., Xiao, T., Zeng, H., Zhu, H. In situ proteolysis for protein crystallization and structure determination. (2007) Nature Methods., 4:1019-21
Tan, K., Duquette, M., Liu, J.H., Shanmugasundaram, K., Joachimiak, A., Gallagher, J.T., Rigby, A.C., Wang, J.H., Lawler, J. Heparin-induced cis- and trans- dimerization modes of the thrombospondin-1 N-terminal domain. (2007) J Biol Chem. 283:3932-41
Wang, J-w., Dauter, M., Alkire, R., Joachimiak, A., and Dauter, Z. Triclinic lysozyme at 0.65 Å resolution. (2007) Acta. Cryst. D. 63:1254-68
Petrova, T., Cuff, M.E., Wu, R., Holzle, D., and Joachimiak, A. Novel hexamerization motif is discovered in a conserved cytoplasmic protein from Salmonella typhimurium. (2007) J. Structural and Functional Genomics. 8:19-25
Cuff, M.E., Li, H., Moy, S., Watson, J., Cipriani, A., Joachimiak, A. Crystal structure of an acetyltransferase protein from Vibrio cholerae strain N16961. (2007) Proteins. 69:422-7
Rezacova, P., Borek, D., Moy, S.F., Joachimiak, A., Otwinowski, Z. Crystal structure and putative function of small Toprim domain-containing protein from Bacillus stearothermophilus. (2007) Proteins. 70:311-319
Rezacova, P., Krejcirikova, V., Borek, D., Moy, S.F., Joachimiak, A., Otwinowski, Z. The crystal structure of the effector-binding domain of the trehalose repressor TreR from Bacillus subtilis 168 reveals a unique quarternary assembly. (2007) Proteins. 69:679-82
Nocek, B., Evdokimova, E., Proudfoot, M., Kudritska, M., Grochowski, L.L., White, R.H., Savchenko, A., Yakunin, A.F., Edwards, A., and Joachimiak, A. Crystal structure of an amide bond forming enzyme: F420:γ-glutamyl ligase from Archaeoglobus fulgidus: the first member of a new structural family of non-ribosomal peptide synthases. (2007) J. Mol. Biol. 372:456-69
Zhou, HB, Nettles, KW, Bruning, JB, Kim, Y, Joachimiak, A, Sharma, S, Carlson, KE, Stossi, F, Katzenellenbogen, BS, Greene, GL, Katzenellenbogen, JA. Elemental isomerism: a boron-nitrogen surrogate for a carbon-carbon double bond increases the chemical diversity of estrogen receptor ligands. (2007) Chem Biol. 14:659-69.
Maresso, A.W., Wu, R., Kern, J.W., Duban, M-E., Zhang, R., Missiakas, D.M., Joachimiak, A., and Schneewind, O. Activation of inhibitors by sortase triggers irreversible modification of the active site. (2007) J. Biol. Chem. 282:23129-39
Grabowski, M., Joachimiak, A., Otwinowski, Z., and Minor, W. Structural genomics: keeping up with expanding knowledge of the protein universe. (2007) Current Opinion in Structural Biology, 50:435-42
Biadene, M., Hazemann, I., Cousido, A., Ginell, S., Joachimiak, A., Sheldrick, G.M., Podjarny, A., and Schneider, T.R. The atomic resolution crystal structure of human Aldose Reductase reveals that breakage of a single aromatic-oxygen interaction is sufficient to allow the opening of the safety-belt loop. (2007) Acta Cryst. D. 63:665-72.
Nettles, K.W., Bruning, J.B., Gil, G., O'neill, E.E., Nowak, J., Hughs, A., Kim, Y., Desombre, E.R., Dilis, R., Hanson, R.N., Joachimiak, A., Greene, G.L. Structural plasticity in the oestrogen receptor ligand-binding domain. (2007) EMBO Rep. 6:563-8.
Rezacova, P., Krejcirikova, V., Borek, D., Moy, S.F., Joachimiak, A., Otwinowski, Z. Crystal structure of TreR effector-binding domain revealed functionally important quaternary assembly. (2007) Proteins, 69:679-682
Watson, J.D., Sanderson, S., Ezersky, A., Savchenko, A., Edwards, A., Orengo, C., Joachimiak, A., Laskowski, R.A., and Thornton, J.M. Towards Fully Automated Structure-Based Function Prediction In Structural Genomics: A Case Study. (2006) J. Mol. Biol. 367:1511-22.
Lesnyak, D.V., Osipiuk, J., Skarina, T., Sergiev, P.V., Bogdanov, A.A., Edwards, A., Savchenko, A., Joachimiak, A., and Dontsova. O.A. Methyltransferase that modifies guanine 966 of the 16S rRNA: Functional identification and tertiary structure. (2007) J. Biol. Chem. 282:5880-7.
Zhou, H.B., Sheng, S., Compton, D.R., Kim, Y., Joachimiak, A., Sharma, S., Carlson, K.E., Katzenellenbogen, B.S., Nettles, K.W., Greene, G.L., Katzenellenbogen, J.A. Structure-Guided Optimization of Estrogen Receptor Binding Affinity and Antagonist Potency of Pyrazolopyrimidines with Basic Side Chains. (2007) J. Med. Chem. 50:399-403.
Gerdts, C.J., Tereshko, V., Yadav, M.K., Dementieva, I., Collart, F., Joachimiak, A., Stevens, R.C., Kuhn, P., Kossiakoff, A., Ismagilov, R.F. Time-Controlled Microfluidic Seeding to Separate Nucleation and Growth Stages of Protein Crystallization. (2006) Angewante Chemie Int. 45,1-5.
Petrova, T., Ginell, S., Mitschler, A., Hazemann, I., Schneider, T., Cousido, A., Lunin, V.Y., Joachimiak, A., and Podjarny, A. Estimation of the Temperature Dependent Component of Atomic Displacement Parameters in Proteins at Subatomic Resolution. (2006) Acta Cryst. Section D, Macromolecular Crystallography, D62, 1535-1544.
Nocek, B., Mulligan, R., Bargassa, M., Collart, F., and Joachimiak, A. Crystal Structure of Aminopeptidase N from Human Pathogen Neisseria meningitides. (2006) Proteins, 70-273-279
Osipiuk, J, Maltseva, N, Dementieva, I, Clancy, S, Collart, F, Joachimiak, A. Structure of YidB protein from Shigella flexneri shows a new fold with homeodomain motif. (2006) Proteins. 65, 509-513.
Gofron, K., Lazarski, K., Molitsky, M., and Joachimiak, A. Biological crystal alignment using image processing. (2006) Proc. SPIE Vol. 6312, 401-410.
Berman, H.M., Burley, S.K., Chiu, W., Sali, A., Adzhubei, A., Bourne, P.E., Bryant, S.H., Dunbrack, Jr., R.L., Fidelis, K., Frank, J., Godzik, A., Henrick, K., Joachimiak, A., Heymann, B., Jones,D., Markley, J.L., Moult, J., Montelione, G.T., Orengo, C., Rossmann, M.G., Rost, B., Saibil, H., Schwede, T., Standley, D.M., Westbrook, J.D., Archiving structural models of biological macromolecules: outcome of a workshop on biological macromolecular structure models. (2006) Structure. 14, 1211-1217.
Shen, Y., Joachimiak, A., Rich Rosner, M., Tang, W-j. Recognition and degradation of amyloidogenic substrates by human insulin-degrading enzyme. (2006) Nature, 443:870-4.
Lilyestrom, W., Klein, M.G., Zhang, R-g., Joachimiak, A., and Chen, X.J. Crystal Structure of SV40 Large T Antigen Bound to p53: Interplay Between a Viral Oncoprotein and a Cellular Tumor Suppressor. (2006) Current Opinion in Genetics & Development, 20, 2373-82.
Mougous, J.D., Cuff, M.E., Raunser, S., Shen, A., Zhou, M., Gifford, C.A., Goodman, A.L., Joachimiak, G., Ordonez, C.L., Lory, S., Walz, T., Joachimiak, A., Mekalanos, J.J. A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus. (2006) Science. 312:1526-30.
Zhang, R., Skarina, T., Evdokimova, E., Edwards, A., Savchenko, A., Laskowski, R., Cuff, M., Joachimiak, A. The Crystal Structure of SAICAR-Synthase from T. maritima at 2.2 Ǻ Reveals an Unusual Covalent Dimer. (2006) Acta Cryst. F, 62, 335-9.
Kim, Y., Maltseva, N., Dementieva, I., Collart, F., Holzle, D., Joachimiak, A. Crystal structure of hypothetical protein YfiH from Shigella flexneri at 2 A resolution. (2006) Proteins, 63:1097-101.
Lunin, V.V., Dobrovetsky, E., Khutoreskaya, G., Zhang, Rg., Joachimiak, A., Bochkarev, A., Maguire, M.E., Edwards, A.M., Koth, C.M. Crystal Structure of the CorA Mg2+ Transporter. (2006) Nature, 440:833-7.
Su, D., Lou, Z., Sun, F., Zhai, Y., Yang, H., Zhang, R., Joachimiak, A., Zhang, X.C., Bartlam, M., Rao, Z. Dodecamer Structure of Severe Acute Respiratory Syndrome Coronavirus Nonstructural Protein nsp10. (2006) J. Virol. 80:7902-8.
Xu, X., Zhai, Y., Sun, F., Lou, Z., Su, D., Xu, Y., Zhang, R., Joachimiak, A, Zhang, X.C., Bartlam, M., Rao, Z. New Antiviral Target Revealed by the Hexameric Structure of Mouse Hepatitis Virus Nonstructural Protein nsp15. (2006) J. Virol. 80:7909-17.
Donnelly, M.I., Zhou, M., Millard, C.S., Clancy, S., Stols, L., Eschenfeldt, W.H., Collart, F.R., and Joachimiak, A. An expression vector tailored for large-scale, high-throughput purification of recombinant proteins. (2006) Protein Exp. & Pur., 47, 446-54.
Bielnicki, J., Devedjiev, Y., Derewenda, U., Dauter, Z., Joachimiak, A., Derewenda, Z.S. The B. subtilis YkuD protein at 2.0 Å resolution: insights into the structure and function of a novel ubiquitous family of bacterial enzymes. (2006) Proteins, 62:144-51.
Rosenbaum, G., Alkire, R., Evans, G., Rotella, F.J., Lazarski, K., Zhang, R., Ginell, S.L., Duke, N., Naday, I., Lazarz, J., Molitsky, M.J., Keefe, L., Gonczy, J., Rock, L., Sanishvili, R., Walsh, M.A., Westbrook, E. and Joachimiak, A. The Structural Biology Center 19ID undulator beamline: facility specifications and protein crystallographic results. (2006) J. Synch. Radiation, 13:30-45.
Liu, G., Shen, Y., Xiao, R., Acton, T., Ma, L., Joachimiak, A., Montelione, G.T., and Szyperski, T. NMR structure of protein yqbG from Bacillus subtilis reveals a novel alpha-helical protein fold. (2006) Proteins, 62:288-91.
Qiu, Y., Tereshko, V., Kim, Y., Zhang, R., Collart, F., Yousef, M., Kossiakoff, A., Joachimiak, A. Crystal structure of AQ_328 from hyperthermophilic bacteria Aquifex aeolicus shows an ancestral histone fold. (2006) Proteins.; 62:8-16.
Binkowski, T.A., Joachimiak, A. and Liang, J. (2005) Protein Surface Analysis for Function Annotation in High-Throughput Structural Genomics Pipeline. (2005). Protein Science, 14:2972-81.
Tan, K., Duquette, M., Liu, J-h., Zhang, Rg., Joachimiak, A., Wang, J-h., and Lawler, J. The Structures of the Thrombospondin-1 N-terminal Domain (TSPN-1) and its Complex with a Synthetic Pentameric Heparin. (2006) Structure, 14:33-42.
Zhang, R., Joachimiak, G., Jiang, S., Cipriani, A., Collart, F., Joachimiak, A., Structure of Phage Protein BC1872 from Bacillus cereus, a Singleton with New Fold. (2006) Proteins, 64, 280-283.
Sun, W., Xu, X., Pavlova, M., Edwards, A.M., Joachimiak, A., Savchenko, A., Christendat, D. The crystal structure of a novel SAM dependent methyltransferase PH1915from Pyrococcus hirikoshii. (2005) Protein Sci. 14:3121-8.
Nocek, B., Chang, C., Li, H., Lezondra, L., Holzle, D., Collart, F., and Joachimiak, A. Crystal Structures of Δ1-Pyrroline-5-Carboxylate Reductase from Human Pathogens Neisseria meningitides and Streptococcus pyogenes. (2005) J. Mol. Biol. 354:91-106.
Petrova, T., Steuber, H., Hazemann, I., Cousido, A., Mitschler, A., Chung, R., Oka, M., Klebe, G., El-Kabbani, O., Joachimiak, A. and Podjarny, A. Factorizing Selectivity Determining Features of Fidarestat towards Aldose and Aldehyde Reductase: Structural and Thermodynamic Properties of the Leu300Pro Mutant Complex. (2005) J. Med. Chem. 48:5659-5665.
Maxwell, K.L. Reed, P., Zhang, R-G. Beasley, S., Walmsley, A.R., Curtis, F.A, Joachimiak, A., Edwards, A.M. and Sharples, G.J. Functional similarities between phage Orf and Escherichia coli RecFOR in initiation of genetic exchange. (2005) Proc. Nat. Acad. Sci. USA. 102:11260-5
Nocek, B., Cuff, M., Evdokimova, E., Edwards, E., Joachimiak, A., and Savchenko, A. 1.6 Å Crystal Structure of a PA2721 Protein from Pseudomonas aeruginosa a Potential Drug Resistance Protein. (2005) Proteins, 63, 1102-5
Singh, S., Korolev, S., Koroleva, O., Zarembinski, T., Collart, F., Joachimiak, A., and Christendat, D. Crystal structure of a novel shikimate dehydrogenase from Haemophilus influenzae. (2005) J. Biol. Chem., 280:17101-8
Zhang, R., Minh, T., Lezondra, L., Korolev, S., Collart, F., Joachimiak, A. 1.6 Å Crystal Structure of YteR Protein from Bacillus subtilis, a Predicted Lyase. (2005) Proteins, 60:561-5.
Sanishvili, R., Pennycooke, M., Gu, J., Xu, X., Joachimiak, A., Edwards, A.M., and Christendat, D. Crystal structure of the hypothetical protein TA1238 from Thermoplasma acidophilum: A new type of helical super-bundle. (2004) J. Structural & Functional Genomics 5:231-40.
Cuff, M.E., Miller, D.J., Korolev, S., Xu, X., Anderson, W.F., Edwards, A., Joachimiak, A. and Savchenko, A. Crystal structure of a predicted precorrin-8x methylmutase from Thermoplasma acidophilus. (2004) Proteins 58:751-754.
Wu, R-y. Skaar, E.P., Zhang, R-g., Joachimiak, G., Gornicki, P., Schneewind, O. and Joachimiak, A. Staphylococcus aureus IsdG and IsdI, Heme Degrading Enzymes with Structural Similarity to Monooxygenases. (2005) J. Biol. Chem. 280:2840-2846.
Sanishvili, R., Wu, R., Kim, D.E., Watson, J.D., Collart, F., and Joachimiak, A. Crystal structure of Bacillus subtilis YckF: structural and functional evolution. (2004) J Struct Biol. 148:98-109.
Brunzelle, J.S., Wu, R., Korolev, S.V., Collart, F.R., Joachimiak, A., Anderson, W.F. Crystal structure of Bacillus subtilis YdaF protein: A putative ribosomal N-acetyltransferase. (2004) Proteins 57:850-853.
Williams, W.A., Zhang, R.G., Zhou, M., Joachimiak, G., Gornicki, P., Missiakas, D., and Joachimiak, A. (2005) The membrane-associated lipoprotein-9 GmpC from Staphylococcus aureus binds the dipeptide GlyMet via side chain interactions. Biochemistry. 43:16193-202.
Devedjiev, Y., Surendranath, Y., Derewenda, U., Gabrys, A., Cooper, D.R., Zhang, R.G., Lezondra, L., Joachimiak, A., Derewenda, Z.S. The Structure and Ligand Binding Properties of the B.subtilis YkoF Gene Product, a Member of a Novel Family of Thiamin/HMP-binding Proteins. (2004) J Mol Biol. 343:395-406.
Janda, I., Devedjiev, Y., Derewenda, U., Dauter, Z., Bielnicki, J., Cooper, D.R., Graf, P.C., Joachimiak, A., Jakob, U., Derewenda, Z.S. The Crystal Structure of the Reduced, Zn(2+)-Bound Form of the B. subtilis Hsp33 Chaperone and Its Implications for the Activation Mechanism. (2004) Structure (Camb). 12:1901-7.
Ruiz, F., Hazemann, I., Mitschler, A., Joachimiak, A., Schneider, T., Karplus, M., Podjarny, A. The crystallographic structure of the aldose reductase-IDD552 complex shows direct proton donation from tyrosine 48. (2004) Acta Crystallogr. D Biol Crystallogr. 60, 1347-54.
Sanishvili, R., Beasley, S., Skarina, T., Glesne, D., Joachimiak, A., Edwards, A., and Savchenko, A. The crystal structure of Escherichia coli MoaB, a member of the molybdenum cofactor biosynthesis operon. (2004) J. Biol. Chem. 279:42139-46
El-Kabbani, O., Darmanin, C., Schneider, T.R., Hazemann, I., Ruiz, F., Oka, M., Joachimiak, A., Schulze-Briese, C., Tomizaki, T., Mitschler, A., Podjarny, A. Ultrahigh resolution drug design. II. Atomic resolution structures of human aldose reductase holoenzyme complexed with Fidarestat and Minalrestat: implications for the binding of cyclic imide inhibitors. (2004) Proteins. 55, 805-13.
Janda, I., Devedjiev, Y., Cooper, D., Chruszcz, M., Derewenda, U., Gabrys, A., Minor, W., Joachimiak, A., Derewenda, Z.S. Harvesting the high-hanging fruit: the structure of the YdeN gene product from Bacillus subtilis at 1.8 A resolution. (2004) Acta Crystallogr D Biol Crystallogr. 60, 1101-7.
Adams, M., Joachimiak, A., Kim, R., Montelione, G.T., & Norvell, J., 2003 NIH Protein Structure Initiative workshop in protein production and crystallization for structural and functional genomics. (2004) J. Structural & Functional Genomics 5:1-2.
Xu, Y., Zhang, R., Joachimiak, A., Carr, P.D., Huber, T., Vasudevan, S.G., Ollis, D.L. Structure of the N-Terminal Domain of Escherichia coli Glutamine Synthetase Adenylyltransferase. (2004) Structure, 5, 861-9.
Zhang, R., Wu, R., Joachimiak, G., Mazmanian, S.K., Missiakas, D.M., Gornicki, P., Schneewind, O., Joachimiak, A. Structures of Sortase B from Staphylococcus aureus and Bacillus anthracis Reveal Catalytic Amino Acid Triad in the Active Site. (2004) Structure, 12:1147-56.
Xing, Y., Liu, D., Zhang, R., Joachimiak, A., Songyang, Z., Xu, W. Structural basis of membrane targeting by the phox homology domain of cytokine-independent survival kinase (CISK-PX). (2004) J Biol Chem. 279:30662-9
Yang, Y., Jun, C.D., Liu, J.H., Zhang, R., Joachimiak, A., Springer, T.A., Wang, J.H. Structural basis for dimerization of icam-1 on the cell surface. (2004) Mol Cell. 14:269-76.
Saridakis, V., Yakunin, A., Xu, X., Anandakumar, P., Pennycooke, M., Gu, J., Cheung, F., Lew, J.M., Sanishvili, R., Joachimiak, A., Arrowsmith, C.H., Christendat, D., Edwards, A. M. The structural basis for methylmalonic aciduria: the crystal structure of archeael ATP:cobalamin adenosyltransferase (2004) J. Biol. Chem. 279:23646-53
Kim, Y., Dementieva, I., Zhou, M., Wu, R., Lezondra, L., Quartey, P., Joachimiak, G., Korolev, O., Li, H. and Joachimiak, A. Automation of protein purification for structural genomics. (2004) J. Functional & Structural Genomics, 5, 111-118.
Wilson, J., Malakhova M., Zhang, R-g., Joachimiak, A., and Hegde R.S., Crystal structure of the Dachshund homology domain of human SKI, (2004) Structure, 5, 785-92
Podjarny, A., Cachau, R.E. Schneider, T., M.Van Zandt and Joachimiak, A., Subatomic and atomic crystallographic studies of aldose reductase: implications for inhibitor binding (2004) Cell. Mol. Life Sci. 61, 763-73
Savchenko, A., Skarina, T., Evdokimova, E., Laskowski, R., Arrowsmith, C. Edwards, A. Joachimiak, A. and Zhang, R. X-ray crystal structure of TM1056 – Thermotoga maritime homologue of E. coli CutA protein at 1.4 A resolution reveals potential ligand site. (2004) Proteins 54, 162-5
Kim, Y., Yakunin, A., Kuznetsova, E., Xu, X., Pennycooke, M., Gu, J., Cheung, F., Proudfoot, M., Joachimiak, A., Edwards, A. and Christendat, D. Structure and function-based characterization of a new phosphoglycolate phosphatase from Thermoplasma acidophilum, (2004) J. Biol. Chem. 279, 517-26
Howard, E.I., Sanishvili, R., Cachau, R.E., Mitschler, A., Chevrier, B., Barth, P., Lamour, V., Van Zandt, M., Sibley, E., Bon, C., Moras, D., Schneider, TR., Joachimiak, A. and Podjarny, A. Ultrahigh resolution drug design I: Details of interactions in human aldose reductase-inhibitor complex at 0.66 Å. (2004) Proteins. 55:792-804.
Zhang, R., Andersson, C., Skarina, T., Evdokimova, E., Edwards, A., Joachimiak, A., Savchenko, A. and Mowbray, S. Structure of the alternate ribose-5-phosphate isomerase (RpiB/AlsB) from Escherichia coli at 2.2 Å resolution. (2003) J. Mol. Biol. 332, 1083-94
Osipiuk, J., Walsh M. and Joachimiak, A. Crystal structure of MboII methyltransferase. (2003) Nuc. Acid. Res. 31, 5440-8.
Watson, J., Todd, A., Bray, J., Laskowski, R., Edwards, A., Joachimiak, A., Orengo, C. and Thornton, J. Target selection and determination of function in structural genomics. (2003) IUBMB Life, 55, 249-55.
Podjarny, A., Schneider, T., Cachau, R. and Joachimiak, A. Structural information content at high resolution : MAD vs. Native. (2003) Methods in Enzymology, 374, 321-341.
Li, D., Zhao, R., Lilysrtom, W., Gai, D., Zhang, R., Decaprio, J., Fanning, E., Joachimiak, A., Szakonyi, G. and Chen, X. Structure of the replicative helicase of the oncoprotein SV40 large tumour antigen. (2003) Nature 423, 512-518.
Sanishvili, R., Yakunin, A., Laskowski, R., Skarina, T., Evdokimova, E., Doherty-Kirby, A., Lajoie, G., Thornton, J., Arrowsmith, C., Savchenko, A., Joachimiak, A. and Edwards, A. Integrating structure, bioinformatics and enzymology to discover function: BioH, a new carboxylesterase from E. coli. (2003) J Biol Chem. 278:26039-45.
Zhu, G., Zhai, P., He, X., Terzyan, S., Zhang, R., Joachimiak, A., Tang, J. and Zhang, X. Crystal structure of the human GGA1 GAT domain. (2003) Biochemistry. 42:6392-6399.
Zhang, R., Duke, N., Laskowski, R., Edwards, A., Joachimiak, A. and Savchenko, A. conserved protein YecM from Escherichia coli shows structural homology to metal-binding isomerases and oxygenases. (2003) Proteins, 51, 311-314.
Wu, R., Zhang, R., Dementieva, I., Maltzev, N., Laskowski, R., Gornicki, P. and Joachimiak, A. Crystal structure of Enterococcus faecalis SlyA-like transcriptional factor (2003) J. Biol. Chem. 278:20240-4
Mazmanian, S., Skaar, E, Gaspar, A., Humayun, M., Gornicki, P., Jelenska, J., Joachimiak, A., Missiakas, D. and Schneewind, O. Passage of heme-iron across the envelope of Staphylococcus aureus. (2003) Science 299:906-9.
Liu, Y., Xiong, Y., Naidenko, O., Liu, J., Zhang, R., Joachimiak, A., Kronenberg, M., Cheroutre, H., Reinherz, E. and Wang, J. The crystal structure of a TL/CD8alphaalpha complex at 2.1 A resolution: implications for modulation of T cell activation and memory. (2003) Immunity. Feb;18(2):205-15.
Shimaoka, M., Xiao, T., Liu, J., Yang, Y., Dong, Y., Jun, C., McCormack, A., Zhang, R., Joachimiak, A., Takagi, J., Wang, J. and Springer, T. Structures of the alpha L I domain and its complex with ICAM-1 reveal a shape-shifting pathway for integrin regulation. (2003) Cell. 112:99-111.
Kwon, T., Chang, J., Kwak, E., Lee, C., Joachimiak, A., Kim, Y., Lee, J. and Cho, Y. Mechanism of histone lysine methyl transfer revealed by the structure of SET7/9-AdoMet. (2003) EMBO J. 22:292-303.
He, H., Ding, Y., Bartlam, M., Sun, F., Le, Y., Qin, X., Tang, H., Zhang, R., Joachimiak, A., Liu, J., Zhao, N. and Rao, Z. Crystal structure of tabtoxin resistance protein complexed with Acetyl coenzyme A reveals the mechanism for beta-lactam acetylation. (2003) J. Mol. Biol. 325:1019-30.
Zhang, R., Andersson, C., Savchenko, A., Beasley, S., Arrowsmith, C., Edwards, A., Joachimiak, A., and Mowbray, S. Structure of Escherichia coli ribose-5-phosphate isomerase: A ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle. (2003) Structure, 11, 31-42.
Zarembinski, T., Kim, Y., Peterson, K., Christendat, D., Dharamsi, A., Arrowsmith, C., Edwards, A., and Joachimiak, A. Deep trefoil knot implicated in RNA binding found in an archaebacterial protein (2003) Proteins, 50: 177-183.
Tan, K., Duquette, M., Liu, J., Dong, Y., Zhang, R., Joachimiak, A., Lawler, J., Wang, J. Crystal structure of the TSP-1 type 1 repeats: A novel layered fold and its biological implication (2002) J. Cell Biol., 159, 373-82.
Korolev, S., Koroleva, O., Petterson, K., Collart, F., Dementieva, I. and Joachimiak, A. Autotracing of acetate CoA transferase a-subunit structure using 3.4 Å MAD and 1.9 Å native data. (2002) Acta Crystal. D58, 2116-2121.
Zhang, R., Grembecka, J., Vinokour, E., Collart, F., Dementieva, I., Minor, W. and Joachimiak, A. Structure of Bacillus subtilis YXKO - a member of UPF0031 family – a putative kinase. (2002) J. Structural Biol. 139:161-70.
Zhang, R., Pappas, T., Brace, J., Miller, P., Oulmassov, T., Molyneaux, J., Anderson, J., Bashkin, J., Winans, S. and Joachimiak, A. Structure of a bacterial quorum-sensing transcription factor complexed with pheromone and DNA. (2002) Nature 417, 971-4.
Christendat, D., Saridakis, V., Kim, Y., Kumar, P., Xu, X., Semesi, A., Joachimiak, A., Arrowsmith, C. and Edwards, A. The Crystal Structure of Hypothetical Protein MTH1491 from Methanobacterium thermoautotropicum. (2002) Acta Cryst. D, 11, 1409-14.
Tan, K., Zelus, B., Meijers, R., Liu, J., Bergelson, J., Duke, N., Zhang, R., Joachimiak, A., Holmes, K. and Wang, J. Crystal structure of murine coronavirus receptor sCEACAM1a[1,4], a member of the carcinoembronic antigen family. (2002) EMBO. J. 21, 2076-2086.
Kim, S., Zhang, R., Braunstein, S., Joachimiak,A., Cvekl, A. and Hegde, R. Structure of the conserved N-terminal domain of human Dachshund reveals a DNA-binding motif. (2002) Structure, 10, 787-95.
Jing, H., Takagi, J., Lindgren, S., Zhang, R., Joachimiak, A., Wang, J. and Springer, T. Archaeal surface layer proteins contain b-propeller, polycystic kidney disease, and a-helix domains, and are related to metazoan cell surface proteins. (2002) Structure, 10, 1453-1464.
Xiong, J., Stehle, T., Zhang, R., Joachimiak, A., Goodman, S. and Arnaout, M. Crystal structure of integrin aVb3 in complex with an Arg-Gly-Asp ligand (2002) Science, 296, 151-155.
Zhang, R., Kim, Y., Skarina, T., Beasley, S., Laskowski, R., Arrowsmith , C., Edwards, A., Joachimiak, A. and Savchenko, A. Crystal structure of Thermotoga maritima 0065 – a member of the IclR transcriptional factor family. (2002) J. Biol. Chem. 277, 19183-90.
Korolev, S., Skarina, T., Evdokimova, E., Beasley, S., Edwards, A., Joachimiak, A. and Savchenko, A. The crystal structure of glutamine amidotransferase from Thermotoga maritime. (2002) Proteins, 49, 420-422.
Zhang, R., Dementieva, I., Duke, N., Collart, F., Quaite-Randall, E., Alkire, R., Maltsev, N., Korolev, O. and Joachimiak, A. Crystal structure of B. subtilis IolI shows Endonuclase IV fold with altered Zn-binding. (2002) Proteins, 48, 423-426.
Kim, Y., Skarina, T., Beasley, S., Laskowski, R., Joachimiak, A., Edwards, A. and Savchenko, A. crystal structure of Escherichia coli EC1530, a glyoxylate induced protein YgbM, (2002) Proteins, 48, 427-430.
Li, N., Sickmier, E., Zhang, R., Joachimiak A. and White S. The MotA transcriptional factor from bacteriophage T4 contains a novel DNA-binding domain: the “double wing” motif. (2002) Mol. Microbiol., 43, 1079-1088.
Korolev, S., Ikeguchi, Y., Skarina, T., Beasley, S., Edwards, A., Joachimiak, A., Pegg, A. and Savchenko, A. The crystal structure of spermidine synthase from Thermotoga maritima with a transition state analogue – implications for catalysis. (2002) Nature Structural Biology, 9, 27-31.
Osipiuk, J., Górnicki, P., Maj, L., Dementieva, I., Laskowski, R. and Joachimiak, A. Streptococcus pneumonia YlxR at 1.35 Å shows a putative new fold, (2001) Acta Crystal. D, Biol Crystallogr. 57, 1747-51.
Xiong, J., Stehle, T., Diefenbach, B., Zhang, R., Dunker, R.., Scott, D., Joachimiak, A., Goodman, S. and Arnaout, M. Crystal structure of Integrin aVb3. (2001) Science, 294, 339-45.
Zhang, R., Skarina, T., Katz, J., Beasley, S., Khachatryan, A., Vyas, S., Arrowsmith, C., Clarke, S., Edwards, A., Joachimiak, A. and Savchenko, A. Structure of Thermotoga maritima SurE – stationary phase survival protein – a novel acid phosphatase. (2001) Structure, 9, 1095-1106.
Wang, J., Meijers, R., Xiong, Y., Sakihama, T., Zhang, R., Joachimiak, A. and Reinherz, E. Crystal structure of the human CD4 N-terminal two domain fragment complexed to a class II MHC molecule. (2001) Proc Natl Acad Sci U S A. 98, 10799-10804.
Donnelly, M., Stols, L., Wilkins Stevens, P., Cai, X., Giometti, C., Tollaksen, S. and Joachimiak, A. Improved expression of a highly toxic protein, Bax, in Escherichia coli by Attachment of a Leader Peptide Based on the Cochaperone, GroES. (2001) Protein Expression and Purification, 22, 422-9.
Paunesku, T., Mittal, S., Protic, M., Oryhon, J., Korolev, S., Joachimiak, A. and Woloschak, G. Proliferating cell nuclear antigen: Ringmaster of the genome. (2001) International Journal of Radiation Biology, 77, 1007-21.
Korolev, S., Dementieva, I., Sanishvili, R., Minor, W., Otwinowski, Z. and Joachimiak, A. Phasing of protein structures by using anomalous signal from rubidium ions. (2001) Acta Crystal, D57, 1008-1012.
Robinson, H., Gao, Y., Yang, X., Sanishvili, R., Joachimiak, A. and Wang, A., Crystallographic analysis of a novel complex of actinomycin D bound to the DNA decamer CGATCGATCG. (2001) Biochemistry 40, 5587-92.
Hua, Q., Dementieva, I., Walsh, M., Hallenga, K., Weiss, M. and Joachimiak A. A Thermophilic Mini-Chaperonin Contains a Conserved Polypeptide-Binding Surface: Combined Crystallographic and NMR Studies of the GroEL Apical Domain with Implications for Substrate Interactions. (2001) J. Mol. Biol., 306, 513-525.
Ciszak, E., Korotchkina, L., Hong, Y., Joachimiak, A. and Patel, M. Crystallization and initial x-ray diffraction analysis of human pyruvate dehydrogenase. (2001) Acta Crystal. D55, 57,465-468.
Teplova, M., Tereshko, V., Sanishvili, R., Joachimiak, A., Bushueva, T., Anderson, W., and Egli, M. The structure of the yrdC gene product from E. coli reveals a new fold and suggests a role in RNA-binding. (2000) Protein Science, 12, 2557-66.
Osipiuk, J., Sriram, M., Mai, X., Adams, M. and Joachimiak, A. Cloning, expression, and crystallization of Cpn60 proteins from Thermococcus litoralis. (2000) Acta Biochem. Pol. 47, 209-14.
Huang, X., Poy, F., Zhang, R., Joachimiak, A., Sudol, M. and Eck, M., Structure of a WW domain-containing fragment of dystrophin complexed with beta-dystroglycan. (2000) Nature Structural Biology, 7, 634-638.
Scavetta, R., Thomas, C., Walsh, M., Szegedi, S., Joachimiak, A., Gumport, R. and Churchill, M. Structure of Rsrl methyltransferase, a member of the N6-Adenine b class of DNA methyltransferases. (2000) Nucleic Acid Res. 20, 3950-3961.
Zhang, Z., Zhang, R., Joachimiak, A., Schlessinger, J., and Kong, X. Crystal structure of human stem cell factor: implication for stem cell factor receptor dimerization and activation. (2000) PNAS, 97, 7732-7737.
Cachau, R., Howard, E., Barth, P., Mitschler, A., Chevrier, B., Lamour, V., Joachimiak, A., Sanishvili, R., Van Zandt, M., Sibley, E., Moras, D. and Podjarny, A. Model of the catalytic mechanism of human aldose reductase based on quantum chemical calculations. (2000) Journal de Physique, 10, 3-13.
Fernandez, E., Joachimiak, A. and Lolis, E. A Cryocooling technique for protein crystals grown by dialysis from volatile solvents. (2000) J. Appl. Cryst. 33, 168-171.
Walsh, M., Otwinowski, Z., Perrakis, A., Anderson, P. and Joachimiak, A. Structure of cyanase reveals that a novel dimeric and decameric arrangement of subunits is required for formation of the enzyme active site. (2000) Structure, 8, 505-514.
Robinson, H., Gao, Y., Sanishvili, R., Joachimiak, A,. Wang, A. Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes. (2000) Nucleic Acids Res. 28, 1760-1766.
Schoehn, G., Quaite-Randall, E., Jimenez, J., Joachimiak, A. and Saibil, H. Three Conformations of an Archaeal Chaperonin, TF55 from Sulfolobus shibatae. (2000) J. Mol. Biol. 296, 813-819.
Naday, I., Sanishvili, R., Joachimiak, A., Westbrook, E., Jorden, A., Loeffen, R. Operational experience of a large area X-ray camera for protein crystallography. (1999) In: Detectors for Crystallography and diffraction Studies at Synchrotron Sources, Proceedings of SPIE, 3774, 66-73.
Lewis, F., Liu, X., Wu, Y., Miller, S., Wasilewski, M., Letsinger, R., Sanishvili, R., Joachimiak, A., Tereshko, V., and Egli, M. Structure and photoinduced electron transfer in exceptionally stable synthetic DNA hairpins with stilbenediether linkers. (1999) JACS, 121, 9905-9906.
Reinherz, E., Tan, K., Tang, L., Kern, P., Liu, J., Xiong, Y., Hussey, R., Smolyar, A., Hare, B., Zhang, R., Joachimiak, A., Chang, H., Wagner, R., and Wang, J. The crystal structure of a CD4 lymphocyte-derived T cell receptor in complex with peptide and MHC class II reveals an orthogonal docking mode. (1999) Science, 286, 1913-1921.
Gao, Y., Robinson, H., Sanishvili, R., Joachimiak, A. and Wang, A. Structure and recognition of sheared tandem G.A base pairs associated with human centromere DNA sequence at atomic resolution. (1999) Biochemistry, 38, 16452-16460.
Walsh, M., Evans, G., Sanishvili, R., Dementieva I. and Joachimiak, A. MAD Data Collection - Current Trends. (1999) Acta Crystal. D55, 1726-1732.
Walsh, M., Dementieva, I., Evans, G., Sanishvili, R. and Joachimiak, A. Taking MAD to the extreme: Ultra fast protein crystal structure determination. (1999) Acta Crystal., D55, 1168-1173.
Zhang, R., Evans, G., Rotella, F., Westbrook, E., Huberman, E., Joachimiak, A., and Collart, F. Differential signatures of bacterial and mammalian IMP dehydrogenase enzymes. (1999) Curr. Med. Chem. 6, 537-543.
Zhang, R., Evans, G., Rotella, F., Westbrook, E. Beno, D. Huberman, E. Joachimiak, A. and Collart, F. Characteristics and crystal structure of bacterial inosine-5'-monophosphate dehydrogenase. (1999) Biochemistry, 38, 4691-4700.
Osipiuk, J., Walsh, M., Freeman, B., Morimoto, R., and Joachimiak, A. Structure of a new crystal form of human Hsp70 ATPase domain. (1999) Acta Crystal. D55, 1105-1107.
Quaite-Randall, E. and Joachimiak, A. Purification of chaperonins. (1999) J. Chromatography, 722, 153-177.
Egli, M., Tereshko, V., Teplova, M., Minasov, G., Joachimiak, A., Sanishvili, R., Weeks, C., Miller, R., Maier, M., An, H., Dan Cook, P. and Manoharan, M. X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution. (1998) Biopolymers 48, 234-52.
Osipiuk, J. and Joachimiak, A. Cloning, Sequencing, and Expression of dnaK-Operon Proteins from Thermophilic Bacterium Thermus thermophilus. (1997) Biochim. Biophys. Acta, 1353, 253-265.
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Thiyagarajan, P., Henderson, S. and Joachimiak, A. Solution structure of GroEL and its complex with rhodanese from small angle neutron scattering. (1996) Structure, 4, 79-88.
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Joachimiak, A. and Zhang, R. Crystallographic studies E. coli trp aporepressor. (1989) Acta Biochemica Polonica, 36, 195-203.
Barciszewski, J., Joachimiak, A. and Twardowski, T. Transfer and ribosomal 5S ribonucleic acids data bases. (1989) Studia Biophysica, 129, 137-148.
Barciszewska, M., Joachimiak, A. and Barciszewski, J. The initiator tRNA from yellow lupine seeds: Correction of the nucleotide sequence and crystallization. (1988) Phytochemistry, 28, 2039-2043.
Otwinowski, Z., Schevitz, R., Zhang, R., Lawson, C., Joachimiak, A., Marmorstein, R., Luisi, B. and Sigler, P. The crystal structure of trp repressor/operator complex at atomic resolution. (1988) Nature, 335, 321-329.
Joachimiak, A. Crystallization of various complexes in trp repressor system. (1988) J. Crystal Growth, 90, 201-208.
Lawson, C., Zhang, R., Otwinowski, Z., Marmorstein, R., Schevitz, R., Luisi, B., Joachimiak, A. and Sigler, P. Crystallography of the trp repressor/operator system: molecular flexibility in genetic regulation. (1988) 39 Mosbacher Colloquium, Vol. 369, p. 202.
Lawson C., Zhang, R., Schevitz R., Otwinowski, Z., Joachimiak, A. and Sigler, P. Flexibility of the DNA-binding domains of trp repressor. (1988) Proteins, 3, 18-31.
Marmorstein, R., Joachimiak, A., Sprinzl, M. and Sigler, P. The structural basis for the interaction between L-tryptophan and the Escherichia coli trp aporepressor. (1987) J. Biol. Chem. 262, 4922-4927.
Zhang, R., Joachimiak, A., Lawson, C., Schevitz, R., Otwinowski, Z. and Sigler, P. The crystal structure of trp aporepressor at 1.8 Å shows how binding tryptophan enhances DNA affinity. (1987) Nature 327, 591-597.
Joachimiak, A., Marmorstein, R., Schevitz, R., Mandecki, W., Fox, R. and Sigler, P. Crystals of the trp repressor-operator complex suitable for X-ray diffraction analysis. (1987) J. Biol. Chem. 262, 4917-4921.
Schevitz, R., Otwinowski, Z., Joachimiak, A., Lawson, C. and Sigler, P. Three-dimensional structure of the trp repressor. (1985) Nature 317, 782-786.
Ackerman, E., Joachimiak, A., Klinghofer, V. and Sigler, P. Directly photocrosslinked nucleotides joining tRNA to aminoacyl-tRNA synthetase in methionine and tyrosine systems. (1985) J. Mol. Biol. 181, 93-102.
Joachimiak, A., Schevitz, R., Kelly, R., Yanofsky, C. and Sigler, P. Functional inferences from crystals of E. coli trp repressor. (1983) J. Biol. Chem. 208, 12641-12643.
Joachimiak, A., Kelly, R., Gunsalus, R., Yanofsky, C. and Sigler, P. Purification and characterization of trp aporepressor. (1983) Proc. Natl. Acad. Sci. USA 80, 668-672.
Zwierzynski, T., Joachimiak, A., Kulinska, K. and Barciszewski, J. Interactions of alkaloids with plant transfer ribonucleic acids. Effect of sparteine on lupine arginyl-tRNA formation. (1982) J. Chem. Biol. Interaction 42, 107-116.
Joachimiak, A., Zwierzynski, T., Barciszewska, M., Radocki, D. and Barciszewski. J. Heparin-Sepharose column chromatography as a new method for purification of aminoacyl-tRNA synthetases. (1981) J. Chromatography 206, 600-605.
Joachimiak, A., Zwierzynski, T., Barciszewska, M., Rafalski, A., Twardowski, T. and Barciszewski, J. A method for isolation of aminoacyl-tRNA synthetases from plants. Purification and some properties of methionyl-, phenylalanyl-, and arginyl-tRNA synthetases from yellow lupine seeds. (1981) International J. Biol. Macromol. 3, 121-134.
Joachimiak, A., Zwierzynski, T., Radocki, D. and Barciszewski, J. A method for detection of enzymatic activities which used aminoacyl-tRNA as a substrate. (1980) J. Biochem. Biophys. Methods 2, 239-243.
Joachimiak, A. and Barciszewski, J. Amino acid: tRNA ligases /E.C.6.1.1.-./ compilation. (1980) FEBS Letters 119, 201-211.
Joachimiak, A. and Barciszewski, J. Simple method for recovery of active oligomeric enzymes from its diluted solutions. (1980) J. Biochem. Biophys. Methods 2, 227-231.
Pulikowska, J., Barciszewska, M., Barciszewski, J., Joachimiak, A., Rafalski, A. and Twardowski, T. Effect of elastase on elongation factor 1 from wheat germ. (1979) Biochem. Biophys. Res. Commun. 91, 1011-1017.
Joachimiak, A., Barciszewska, M., Barciszewski, J. and Wiewiorowski. M. Application of spermine-Sepharose column chromatography to separation of plant tRNAs and aminoacyl-tRNA synthetases. (1979) J. Chromatography 180, 157-162.
Barciszewski, J., Joachimiak, A., Rafalski, A., Barciszewska, M., Twardowski, T. and Wiewiorowski. M. Conservation of the structures of plant tRNAs and aminoacyl-tRNA synthetases. (1979) FEBS Letters 102, 194-197.
Joachimiak, A., Barciszewski, J., Twardowski, T., Barciszewska, M. and Wiewiorowski, M. Purification and properties of methionyl-tRNA synthetase from lupine seeds. (1978) FEBS Letters 93, 51-54.
Book Chapters:
Liang, J., Tseng Y.Y., Dundas, J., Binkowski, T.A., Joachimiak, A., Ouyang, Z., and Adamian, L., (2009) Predicting and characterizing protein functions through matching geometric and evolutionary patterns of binding surfaces. Advances in Protein Chemistry and Structural biology, Vol. 75, Structural Genomics, Part A, pp. 107-141.
Kim, Yc., Bigelow, L., Borovilos, M., Dementieva, I., Duggan, E., Eschenfeldt, W., Hatzos, C., Joachimiak, G., Li, H., Maltseva, N., Mulligan, R., Quartey, P., Sather, A., Stols, L., Volkart, L., Wu. R., Zhou, M., and Joachimiak, A., (2009) High throughput protein purification for X-ray crystallography and NMR. Advances in Protein Chemistry and Structural biology, Vol. 75, Structural Genomics, Part A, pp. 85-105.
Eschenfeldt, W.H., Lucy, S., Millard, C.S., Joachimiak, A., Mark, I.D. A Family of LIC Vectors for High-Throughput Cloning and Purification of Proteins. (2009) Methods in Molecular Biology: High Throughput Protein Expression and Purification, Ed. S. A. Doyle, Humana Press, 498:105-15.
Advances in Protein Chemistry and Structural Biology Vol. 75 Structural Genomics Part A and B, Ed. A. Joachimiak (2009), Elsevier, in preparation
A. Joachimiak, High-throughput Technologies for Structural Biology: The Protein Structure Initiative Perspective (2007 Structural Proteomics, Eds. J.L. Sussman and I. Silman)
Abdullah, J.M., Joachimiak, A., Collart, F.R. "System 48" high-throughput cloning and protein expression analysis. (2009) Methods in Molecular Biology: High Throughput Protein Expression and Purification, Ed. S. A. Doyle, Humana Press,498:117-27.
Joachimiak, A. Structural genomics – expanding protein structural universe (2005) The Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics, Wiley & Sons Ed.,
Quaite-Randall, E. and Joachimiak, A. Purification of archaeal chaperonin from Sulfolobus shibatae. (2000) Methods in Molecular Biology, Chaperonin Protocols, (Ed. C. Schneider, Humana Press), p 1-14.
Quaite-Randall, E. and Joachimiak, A. Purification of GroES from an overproducing E. coli strain. (2000) Methods in Molecular Biology, Chaperonin Protocols, (Ed. C. Schneider, Humana Press), p 41-49.
Quaite-Randall, E. and Joachimiak, A. Purification of GroEL from an overproducing E. coli strain, (2000) Methods in Molecular Biology, Chaperonin Protocols, (Ed. C. Schneider, Humana Press), p 29-39.
Quaite-Randall, E. and Joachimiak, A., Purification of hsp60 from Thermus thermophilus. (2000) Methods in Molecular Biology, Chaperonin Protocols, (Ed. C. Schneider, Humana Press), p 15-27.
