Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss322200	KWOK|OVLP-000621-26287		rev/T	A/G	attttcttttgagcctttcactctacctcc	aataggatccacgcttcctctcataaagtt	06/30/00	10/10/03	79	Genomic			99 %
ss535257	SC_JCM|AC008434.3_122531		fwd/B	C/T	aactttatgagaggaagcgtggatcctatt	ggaggtagagtgaaaggctcaaaagaaaat	07/12/00	10/10/03	87	Genomic			unknown
ss1248922	KWOK|OVLP-000804-509851		fwd/B	C/T	aactttatgagaggaagcgtggatcctatt	ggaggtagagtgaaaggctcaaaagaaaat	09/02/00	10/10/03	92	Genomic			97 %
ss1835172	KWOK|OVLP-000925-548053		fwd/B	C/T	aactttatgagaggaagcgtggatcctatt	ggaggtagagtgaaaggctcaaaagaaaat	10/05/00	10/10/03	92	Genomic			97 %
ss3032130	TSC-CSHL|TSC1113824		fwd/B	C/T	aactttatgagaggaagcgtggatcctatt	ggaggtagagtgaaaggctcaaaagaaaat	06/07/01	10/10/03	96	Genomic			unknown
ss5228475	TSC-CSHL|TSC1128850		fwd/B	C/T	aactttatgagaggaagcgtggatcctatt	ggaggtagagtgaaaggctcaaaagaaaat	09/20/02	10/10/03	108	Genomic			unknown
ss14658043	WI_SSAHASNP|chr5.NT_006713.13_9255645		rev/T	A/G	attttcttttgagcctttcactctacctcc	aataggatccacgcttcctctcataaagtt	11/05/03	10/25/06	119	Genomic			unknown
ss16172390	SC_SNP|NT_006713.13_9255645		rev/T	A/G	attttcttttgagcctttcactctacctcc	aataggatccacgcttcctctcataaagtt	11/18/03	11/22/03	120	Genomic			unknown
ss19617674	CSHL-HAPMAP|CSHL-HuDD-200402.chr5.NT_006713.13_9255645		rev/T	A/G	attttcttttgagcctttcactctacctcc	aataggatccacgcttcctctcataaagtt	02/20/04	03/04/04	120	Genomic			unknown
ss23344584	PERLEGEN|afd2944217		rev/T	A/G	attttcttttgagcctttcactctacctcc	aataggatccacgcttcctctcataaagtt	08/10/04	09/13/04	123	Genomic			unknown
ss44596589	ABI|hCV622259		rev/T	A/G	attttcttttgagcctttcactctacctcc	aataggatccacgcttcctctcataaagtt	07/19/05	07/19/05	126	Genomic			unknown
ss66466218	AFFY|SNP_A-2256642		rev/T	A/G	ctttcactctacctcc	aataggatccacgctt	10/29/06	08/14/07	127	Genomic			unknown
ss76269613	AFFY|AFFY_6_1M_SNP_A-2256642		rev/T	A/G	ctttcactctacctcc	aataggatccacgctt	08/28/07	08/30/07	129	Genomic			unknown
ss82298000	HGSV|Cor19240_SNV_20070510.chr5_79899269		rev/T	A/G	attttcttttgagcctttcactctacctcc	aataggatccacgcttcctctcataaagtt	11/30/07	12/02/07	130	Genomic			unknown
ss84615077	HGSV|Cor18517_SNV_20070510.chr5_79899269		rev/T	A/G	attttcttttgagcctttcactctacctcc	aataggatccacgcttcctctcataaagtt	12/06/07	12/07/07	130	Genomic			unknown
ss93149836	BCMHGSC_JDW|JWB-1998726		rev/T	A/G	attttcttttgagcctttcactctacctcc	aataggatccacgcttcctctcataaagtt	02/26/08	03/03/08	129	Genomic			unknown

Fasta sequence   (Legend)

 TTTGTAAATG GACATTTATT GAATTCGTAA GTAGCAAGTA TGTTCGGATC TTTTAAaatc
 ctcacaatca tctactgtaa agtagatatt atccccattt caggggtgag gaaactaagg
 ctcagaagaa tgaCCTCCCA GAGGTTGATA ACTTGGAGAG ATCCGGAGCC CAGGTCCCTG
 ATACGCACCC TGCTGCCTCA TCTGAGCAGT CTTTAATCCC CTTTGGGGCA GCACATAGGC
 AGGGACTGGG GCAAGGGCGA CGGGCTGAAT TTTGAGTTCA AACCCATTTG TTAAGTTCTT
 CCCCACCATG GCCAGATGAT GAACTTTATG AGAGGAAGCG TGGATCCTAT T
 Y
 GGAGGTAGAG TGAAAGGCTC AAAAGAAAAT AACTTTTCCT TCttttcttt tcttttcttt
 tttttttttt ttgagacgga gtcttgcttt tgtcacccgg gctggagtgc agtggtgcaa
 tctcggctca ctgcaacctc cgcctcccga gttcaagtga ttctcctgcc tcagcctcct
 gagtagctgg gattacaggc acccgccaca atgcccggct aatttttgta tttgtagtag
 agatggagtt tcaccatgct gtccaggctg gtctcaaact cttgacctca gttgatccgc
 tccccctcgg cctcccaaag tgctgggatt acaggcatga gccaccatgc ccggccACTT
 TTCTGCCTTA ATGAAAGGAA AACTGGGGGT GGCATGGGGA CAAAAAGCCA CAGGAAAGGC
 CTGGCCTATC GTCTCCAAGA TGGCTTTGCA AGCACCTCAG CTCATGCAGC ACTGCCATGT
 GAGATAACAC ACAAATCAGG

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_006713->NM_001004441 function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	T/T	HWP	C	T
ss14658043	HapMap-CEU	European	120	IG	0.767	0.217	0.017	1.000	0.875	0.125
	HapMap-HCB	Asian	90	IG	0.956	0.044		1.000	0.978	0.022
	HapMap-JPT	Asian	90	IG	0.978	0.022		1.000	0.989	0.011
	HapMap-YRI	Sub-Saharan African	120	IG	0.433	0.500	0.067	0.251	0.683	0.317
ss23344584	AFD_EUR_PANEL	European	48	IG	0.833	0.167		0.752	0.917	0.083
	AFD_AFR_PANEL	African American	46	IG	0.348	0.565	0.087	0.317	0.630	0.370
	AFD_CHN_PANEL	Asian	48	IG	0.958	0.042		1.000	0.979	0.021
ss66466218	HapMap-CEU	European	118	GF	0.763	0.220	0.017		0.873	0.127
	HapMap-HCB	Asian	90	GF	0.956	0.044			0.978	0.022
	HapMap-JPT	Asian	90	GF	0.978	0.022			0.989	0.011
	HapMap-YRI	Sub-Saharan African	120	GF	0.433	0.500	0.067		0.683	0.317

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
Validated by: PERLEGEN DoubleHit found by:  BCM_SSAHASNP, NCBI	UNKNOWN	UNKNOWN	UNKNOWN