Positioning of AACAA

From Table IVb: Position-dependent pentamers: Clustered pentamers
AACAA
is found in the upstream regions of these s yeast genes in the following intervals:

-551 to -600 nt upstream of the ATG start codon
3 elements found in 3 genes

```
YDL096C		
```

YHR172W	SPC97	spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP

YLR228C	ECM22	involved in cell wall biogenesis (putative)

-501 to -550 nt upstream of the ATG start codon
6 elements found in 6 genes

```
YBR007C		
```

YER001W	MNN1	Alpha-1,3-mannosyltransferase

YER016W	BIM1	microtubule-binding protein

```
YER018C	SPC25	component of spindle pole
```
```
YFR026C		
```
```
YOL019W		
```

-451 to -500 nt upstream of the ATG start codon
3 elements found in 3 genes

```
YBR156C		
```

YER001W	MNN1	Alpha-1,3-mannosyltransferase

```
YOL019W		
```

-401 to -450 nt upstream of the ATG start codon
10 elements found in 10 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

YER016W	BIM1	microtubule-binding protein

```
YER018C	SPC25	component of spindle pole
```

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

```
YLR455W		
```

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

```
YOL019W		
```

YOR026W	BUB3	cell cycle checkpoint protein

-351 to -400 nt upstream of the ATG start codon
9 elements found in 9 genes

YBL052C	SAS3	involved in silencing at HMR

```
YBR184W		
```

YCR065W	HCM1	Transcription factor (fork head domain)

```
YDL094C		
```

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YIL126W	STH1	helicase related protein, snf2 homolog

YIL140W	SRO4	localizes to the plasma membrane

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

YOR026W	BUB3	cell cycle checkpoint protein

-301 to -350 nt upstream of the ATG start codon
12 elements found in 12 genes

YBR275C	RIF1	RAP1-interacting factor, involved in establishment of repressed chromatin

YCR065W	HCM1	Transcription factor (fork head domain)

```
YDR219C		
```

YDR252W	BTT1	negative regulator of RNA polymerase II

YER016W	BIM1	microtubule-binding protein

YIL126W	STH1	helicase related protein, snf2 homolog

YKL067W	YNK1	Nucleoside diphosphate kinase

YLR045C	STU2	spindle pole body component

```
YLR126C		
```

YLR228C	ECM22	involved in cell wall biogenesis (putative)

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

YPL016W	SWI1	Zinc-finger transcription factor

-251 to -300 nt upstream of the ATG start codon
11 elements found in 8 genes

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

YBL052C	SAS3	involved in silencing at HMR

```
YBR007C		
```

YER003C	PMI40	mannose-6-phosphate isomerase

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

YIL126W	STH1	helicase related protein, snf2 homolog

```
YLR455W		
```

YNL304W	YPT11	similar to Ypt1 and other Ras-like GTP-binding proteins

-201 to -250 nt upstream of the ATG start codon
10 elements found in 9 genes

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

```
YDR219C		
```

YFR037C	RSC8	chromatin remodeling complex subunit

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YHR061C	GIC1	interacts with GTPase, involved in bud emergence

```
YLR126C		
```

YMR190C	SGS1	has DNA helicase signature motifs

```
YNL176C		
```

YPR141C	KAR3	kinesin-like nuclear fusion protein

-151 to -200 nt upstream of the ATG start codon
7 elements found in 5 genes

YBL052C	SAS3	involved in silencing at HMR

```
YBR296C	PHO89	Probable Na+/Pi symporter
```

YDR488C	PAC11	similar to rat dynein intermediate chain

YFR027W	ECO1	involved in establishment of cohesion between sister chromatids

YHR172W	SPC97	spindle pole body component, associates in a complex with Spc98p and Tub4p perhaps as part of the microtubule attachment site of the SBP

-101 to -150 nt upstream of the ATG start codon
19 elements found in 12 genes

```
YBR156C		
```

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YDR113C	PDS1	42-kDa nuclear protein
```
```
YDR219C		
```

YDR356W	NUF1	component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein

```
YEL017W		
```

YJR155W	AAD10	Hypothetical aryl-alcohol dehydrogenase (AAD)

YKR001C	VPS1	putative GTP-binding protein; similar to mammalian Mx proteins

YKR010C	TOF2	topoisomerase I interacting factor 2

```
YLL062C		
```

YNL126W	SPC98	spindle pole body component, associates in a complex with Spc97p and Tub4p perhaps as part of the microtubule attachment site of the SBP

```
YOL019W		
```

-51 to -100 nt upstream of the ATG start codon
34 elements found in 23 genes

YAL001C	TFC3	transcription factor tau (TFIIIC) subunit 138

```
YBL063W	KIP1	kinesin related protein
```
```
YBR156C		
```
```
YBR184W		
```

YCR035C	RRP43	Component of the exosome 3->5 exoribonuclease complex with Rrp4p, Rrp41p, Rrp42p and Dis3p (Rrp44p).

```
YDL094C		
```

YDL095W	PMT1	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YDR179C		
```
```
YDR219C		
```

YDR252W	BTT1	negative regulator of RNA polymerase II

YDR356W	NUF1	component of the spindle pole body that interacts with Spc42p, calmodulin, and a 35 kDa protein

YDR488C	PAC11	similar to rat dynein intermediate chain

```
YEL017W		
```

YEL061C	CIN8	kinesin-related protein involved in establishment and maintenance of mitotic spindle

YER016W	BIM1	microtubule-binding protein

```
YER018C	SPC25	component of spindle pole
```
```
YER118C	SSU81	Transmembrane osmosensor
```

YIL126W	STH1	helicase related protein, snf2 homolog

YIL140W	SRO4	localizes to the plasma membrane

```
YLR151C		
```
```
YMR048W		
```
```
YOR284W		
```

YPR141C	KAR3	kinesin-like nuclear fusion protein

-1 to -50 nt upstream of the ATG start codon
17 elements found in 15 genes

YBL002W	HTB2	Histone H2B (HTB1 and HTB2 code for nearly identical proteins)

YBL003C	HTA2	Histone H2A (HTA1 and HTA2 code for nearly identical proteins)

```
YBL063W	KIP1	kinesin related protein
```
```
YBR007C		
```

YBR276C	PPS1	dual specificity protein phosphatase

```
YBR296C	PHO89	Probable Na+/Pi symporter
```

YCR065W	HCM1	Transcription factor (fork head domain)

YDL093W	PMT5	dolichyl phosphate-D-mannose:protein O-D-mannosyltransferase

```
YDL094C		
```
```
YDR179C		
```
```
YEL017W		
```

YGR140W	CBF2	110 kDa subunit of the centromere binding factor CBF3

YIL126W	STH1	helicase related protein, snf2 homolog

YJR137C	ECM17	Putative sulfite reductase

YNL072W	RNH35	RNase H(35), a 35 kDa ribonuclease H

From Table IVb: Position-dependent pentamers: Clustered pentamers AACAA is found in the upstream regions of these s yeast genes in the following intervals:

From Table IVb: Position-dependent pentamers: Clustered pentamers
AACAA
is found in the upstream regions of these s yeast genes in the following intervals: